Wall clock time and date at job start Tue Mar 31 2020 02:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47233 * 2 1 4 4 C 1.35310 * 126.66809 * 90.00186 * 3 2 1 5 5 C 1.42276 * 103.92527 * 179.97438 * 4 3 2 6 6 C 1.48329 * 126.94089 * 180.02562 * 5 4 3 7 7 O 1.21499 * 119.99842 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00303 * 180.02562 * 6 5 4 9 9 C 1.47029 * 125.64731 * 0.02562 * 8 6 5 10 10 C 1.54323 * 107.27082 * 181.02435 * 9 8 6 11 11 C 1.55153 * 102.94515 * 22.19084 * 10 9 8 12 12 O 1.42901 * 111.00095 * 82.57270 * 11 10 9 13 13 C 1.50691 * 111.00493 * 206.38582 * 11 10 9 14 14 H 1.07999 * 120.00390 * 0.02562 * 13 11 10 15 15 C 1.37881 * 120.00144 * 180.02562 * 13 11 10 16 16 N 1.31518 * 119.99791 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00262 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47097 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46945 * 120.00171 * 17 15 13 20 20 H 1.48495 * 109.47003 * 240.00171 * 17 15 13 21 21 C 1.47429 * 125.65172 * 179.71917 * 8 6 5 22 22 N 1.30979 * 106.12156 * 0.02562 * 5 4 3 23 23 O 1.20913 * 111.43938 * 359.97438 * 22 5 4 24 24 H 1.08999 * 109.47143 * 60.00346 * 1 2 3 25 25 H 1.09008 * 109.46988 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46888 * 299.99908 * 1 2 3 27 27 H 1.08996 * 109.46963 * 239.99702 * 2 1 3 28 28 H 1.09000 * 109.46942 * 120.00167 * 2 1 3 29 29 H 1.08007 * 128.04133 * 359.97438 * 4 3 2 30 30 H 1.08999 * 109.88028 * 300.44488 * 9 8 6 31 31 H 1.09005 * 109.88211 * 61.44922 * 9 8 6 32 32 H 1.08999 * 110.71602 * 140.55839 * 10 9 8 33 33 H 1.09001 * 110.71708 * 263.82842 * 10 9 8 34 34 H 0.96702 * 113.99867 * 180.02562 * 12 11 10 35 35 H 0.97000 * 120.00021 * 180.02562 * 16 15 13 36 36 H 1.08997 * 110.36369 * 274.74637 * 21 8 6 37 37 H 1.08990 * 110.36410 * 37.06492 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3017 2.1825 1.0853 5 6 2.7397 3.4194 0.5353 6 6 3.1673 4.6264 1.2840 7 8 3.1648 4.6201 2.4990 8 7 3.5576 5.7303 0.6167 9 6 3.6073 5.8748 -0.8456 10 6 4.1370 7.2924 -1.1482 11 6 4.8910 7.6671 0.1550 12 8 6.2100 7.1172 0.1597 13 6 4.9313 9.1615 0.3450 14 1 4.4681 9.8111 -0.3828 15 6 5.5595 9.6995 1.4482 16 7 6.1240 8.9085 2.3343 17 14 5.6100 11.5519 1.6835 18 1 4.9092 12.2137 0.5538 19 1 4.9387 11.9073 2.9595 20 1 7.0228 12.0074 1.7238 21 6 3.9994 6.9951 1.2320 22 7 2.6891 3.2771 -0.7658 23 8 2.2992 2.1751 -1.0750 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.2065 1.9141 2.1272 30 1 4.2803 5.1293 -1.2691 31 1 2.6084 5.7526 -1.2644 32 1 4.8198 7.2757 -1.9977 33 1 3.3122 7.9819 -1.3284 34 1 6.7197 7.3246 0.9549 35 1 6.5657 9.2869 3.1106 36 1 3.1403 7.6247 1.4633 37 1 4.5788 6.7963 2.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898086449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:19:59 Heat of formation + Delta-G solvation = -24.791004 kcal Electronic energy + Delta-G solvation = -22078.488365 eV Core-core repulsion = 18631.224521 eV Total energy + Delta-G solvation = -3447.263844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.00520 -39.35254 -37.22033 -35.09873 -34.37771 -33.61486 -32.16979 -30.45494 -29.99222 -27.91471 -25.84076 -24.45422 -23.83261 -22.73335 -21.60041 -19.68134 -18.71987 -17.74857 -17.24350 -17.15154 -16.51105 -15.33597 -15.03080 -14.89749 -14.77755 -14.51089 -14.08807 -13.54227 -13.21434 -13.07905 -12.90147 -12.85549 -12.12315 -12.04828 -11.78341 -11.58920 -11.50456 -11.19079 -11.06861 -10.76232 -10.58981 -10.48272 -10.32533 -10.18486 -9.77255 -9.46807 -9.41488 -8.71241 -8.42203 -7.85750 -6.31537 -4.41066 1.26192 1.75405 2.92552 3.18089 3.27214 3.30646 3.37016 3.55648 4.13601 4.24412 4.41821 4.73577 4.85237 4.94905 5.00125 5.07792 5.28709 5.41992 5.46758 5.49465 5.66851 5.74257 5.81026 5.85529 5.90939 6.09428 6.25888 6.49984 6.71232 6.81118 6.90153 7.20179 7.30498 7.72022 7.96065 8.03924 8.11749 8.54791 8.63353 9.28867 9.44444 10.75913 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.042631 B = 0.003902 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.648634 B = 7174.862167 C = 7452.431178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.042 4.042 4 C -0.182 4.182 5 C -0.012 4.012 6 C 0.597 3.403 7 O -0.537 6.537 8 N -0.590 5.590 9 C 0.110 3.890 10 C -0.119 4.119 11 C 0.250 3.750 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.069 0.931 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.093 3.907 22 N -0.327 5.327 23 O 0.116 5.884 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.178 0.822 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.386 0.614 35 H 0.271 0.729 36 H 0.065 0.935 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.895 -14.971 -4.901 18.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.105 4.105 4 C -0.204 4.204 5 C -0.172 4.172 6 C 0.382 3.618 7 O -0.414 6.414 8 N -0.322 5.322 9 C -0.013 4.013 10 C -0.157 4.157 11 C 0.209 3.791 12 O -0.393 6.393 13 C -0.575 4.575 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.535 5.535 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.028 4.028 22 N -0.029 5.029 23 O 0.041 5.959 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.108 0.892 28 H 0.116 0.884 29 H 0.195 0.805 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.238 0.762 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.692 -14.371 -5.619 17.710 hybrid contribution 0.118 0.866 1.555 1.784 sum -8.573 -13.505 -4.064 16.504 Atomic orbital electron populations 1.21812 0.93518 1.02642 1.03001 1.20102 0.96598 0.86274 1.04807 1.24455 1.03088 0.97171 0.85750 1.22413 1.04861 0.91758 1.01367 1.23671 1.05457 0.98078 0.89949 1.16522 0.78793 0.80543 0.85955 1.90765 1.55873 1.82504 1.12295 1.48627 1.61812 1.13275 1.08441 1.22072 1.00146 0.99050 0.80063 1.22665 0.99661 0.93503 0.99833 1.19637 0.80430 0.91095 0.87970 1.86079 1.27376 1.78276 1.47592 1.21538 1.36894 0.90899 1.08157 0.91290 1.25105 0.94029 0.99186 0.94999 1.69575 1.36313 1.35343 1.12232 0.86308 0.77975 0.84175 0.78213 1.19536 1.20730 1.20708 1.23467 0.98653 0.80778 0.99937 1.74314 1.13937 0.98752 1.15857 1.84786 1.60105 1.17483 1.33478 0.91993 0.91286 0.91984 0.89235 0.88432 0.80470 0.91680 0.92292 0.90515 0.90396 0.76160 0.91873 0.91647 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.89 37.16 0.37 -0.52 16 2 C -0.04 -0.26 6.50 -27.89 -0.18 -0.44 16 3 C -0.04 -0.47 6.73 -35.36 -0.24 -0.70 16 4 C -0.18 -2.52 10.92 -39.07 -0.43 -2.95 16 5 C -0.01 -0.22 7.03 -82.53 -0.58 -0.80 16 6 C 0.60 12.97 7.88 -12.11 -0.10 12.87 16 7 O -0.54 -12.98 17.21 5.37 0.09 -12.89 16 8 N -0.59 -13.09 3.32 -171.31 -0.57 -13.66 16 9 C 0.11 2.17 5.56 -3.06 -0.02 2.15 16 10 C -0.12 -2.47 6.12 -24.90 -0.15 -2.62 16 11 C 0.25 6.18 0.89 -89.51 -0.08 6.10 16 12 O -0.58 -15.34 13.19 -35.23 -0.46 -15.81 16 13 C -0.54 -14.02 8.25 -34.44 -0.28 -14.31 16 14 H 0.07 1.76 7.76 -52.49 -0.41 1.35 16 15 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 16 N -0.90 -23.93 10.72 55.43 0.59 -23.34 16 17 Si 0.91 20.33 29.54 -169.99 -5.02 15.31 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 C 0.09 2.28 5.65 -2.41 -0.01 2.26 16 22 N -0.33 -5.42 9.72 33.29 0.32 -5.09 16 23 O 0.12 1.57 11.18 17.25 0.19 1.77 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.18 2.15 8.06 -52.48 -0.42 1.73 16 30 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 31 H 0.06 1.06 7.79 -51.93 -0.40 0.65 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.08 1.51 8.01 -51.93 -0.42 1.09 16 34 H 0.39 10.44 6.93 45.56 0.32 10.76 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.07 1.62 8.04 -51.93 -0.42 1.20 16 37 H 0.09 2.33 7.64 -51.93 -0.40 1.93 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -30.29 316.00 -6.10 -36.40 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.22 Total: 9.78 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.79 Total: 2.76 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.35 Total: -42.10 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.18 Total: -26.93 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.29 -6.10 -36.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898086449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.609 kcal (2) G-P(sol) polarization free energy of solvation -30.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds