Wall clock time and date at job start Tue Mar 31 2020 02:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34321 * 126.60094 * 2 1 4 4 C 1.50696 * 126.60729 * 359.71260 * 3 2 1 5 5 C 1.47965 * 106.79016 * 179.73889 * 3 2 1 6 6 O 1.21409 * 125.78903 * 179.97438 * 5 3 2 7 7 N 1.34517 * 108.41501 * 359.97438 * 5 3 2 8 8 C 1.46502 * 125.20545 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47274 * 89.99928 * 8 7 5 10 10 C 1.50706 * 109.46720 * 179.97438 * 9 8 7 11 11 O 1.21293 * 120.00357 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99730 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99946 * 0.02562 * 12 10 9 14 14 C 1.37095 * 120.00027 * 180.02562 * 12 10 9 15 15 H 1.07998 * 119.99828 * 22.40695 * 14 12 10 16 16 C 1.38946 * 119.99993 * 202.40899 * 14 12 10 17 17 N 1.31412 * 120.00442 * 11.60468 * 16 14 12 18 18 Si 1.86805 * 119.99892 * 191.61085 * 16 14 12 19 19 H 1.48498 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47311 * 119.99866 * 18 16 14 21 21 H 1.48502 * 109.46677 * 239.99672 * 18 16 14 22 22 C 1.34518 * 109.58532 * 0.02562 * 7 5 3 23 23 O 1.21404 * 125.78908 * 180.02562 * 22 7 5 24 24 H 1.09004 * 109.47085 * 90.00381 * 1 2 3 25 25 H 1.08997 * 109.47116 * 209.99813 * 1 2 3 26 26 H 1.08996 * 109.47667 * 330.00503 * 1 2 3 27 27 H 1.08995 * 109.47141 * 89.99518 * 4 3 2 28 28 H 1.08995 * 109.47511 * 210.00619 * 4 3 2 29 29 H 1.09004 * 109.47010 * 330.00212 * 4 3 2 30 30 H 1.09006 * 109.46760 * 210.00188 * 8 7 5 31 31 H 1.08995 * 109.46947 * 329.99634 * 8 7 5 32 32 H 1.08999 * 109.47170 * 299.99230 * 9 8 7 33 33 H 1.09003 * 109.47211 * 60.00278 * 9 8 7 34 34 H 1.09000 * 109.47039 * 92.15510 * 13 12 10 35 35 H 1.09001 * 109.47165 * 212.15200 * 13 12 10 36 36 H 1.09003 * 109.47286 * 332.15768 * 13 12 10 37 37 H 0.96999 * 120.00279 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0783 0.0000 4 6 1.8725 2.5210 -0.0061 5 6 3.6999 0.5769 0.0065 6 8 4.7017 1.2628 0.0078 7 7 3.6672 -0.7679 0.0106 8 6 4.8433 -1.6414 0.0180 9 6 5.2470 -1.9409 1.4630 10 6 6.4565 -2.8400 1.4704 11 8 6.9475 -3.2048 0.4231 12 7 6.9932 -3.2378 2.6410 13 6 6.4005 -2.7967 3.9060 14 6 8.0937 -4.0553 2.6479 15 1 8.7430 -4.0940 1.7857 16 6 8.3738 -4.8339 3.7640 17 7 7.4768 -4.9656 4.7153 18 14 10.0257 -5.6936 3.9125 19 1 10.8520 -5.3879 2.7171 20 1 10.7242 -5.2164 5.1329 21 1 9.8136 -7.1605 4.0052 22 6 2.3892 -1.1878 0.0068 23 8 2.0221 -2.3450 0.0095 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.7633 2.8719 1.0201 28 1 2.6215 3.1245 -0.5188 29 1 0.9175 2.6102 -0.5240 30 1 4.6063 -2.5741 -0.4939 31 1 5.6675 -1.1452 -0.4942 32 1 5.4841 -1.0082 1.9748 33 1 4.4227 -2.4372 1.9751 34 1 5.6679 -3.5316 4.2398 35 1 7.1828 -2.6960 4.6583 36 1 5.9096 -1.8343 3.7613 37 1 7.6725 -5.5089 5.4947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900453018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:28 Heat of formation + Delta-G solvation = -59.886429 kcal Electronic energy + Delta-G solvation = -21733.320422 eV Core-core repulsion = 18284.534726 eV Total energy + Delta-G solvation = -3448.785696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32050 -38.66470 -38.52865 -36.35198 -35.43894 -34.62324 -31.86247 -31.13160 -30.20846 -27.42041 -26.17547 -24.67446 -24.43960 -23.05743 -20.24837 -19.87996 -18.85251 -17.28481 -16.84523 -16.55451 -15.99734 -15.87159 -15.22868 -14.80353 -14.40048 -14.14596 -14.07918 -13.83503 -13.72315 -13.69254 -13.12122 -13.04387 -12.76506 -12.64421 -12.58095 -11.95124 -11.65728 -11.41629 -11.21469 -10.90801 -10.85794 -10.69643 -10.31647 -10.27900 -10.22442 -9.84094 -9.52055 -9.04230 -8.44802 -7.70260 -6.31818 -3.88662 -0.06258 2.33678 2.37569 2.75793 3.15197 3.25735 3.33063 3.51505 3.85451 3.97942 4.13981 4.61324 4.71356 4.84020 5.09649 5.14290 5.19430 5.22467 5.24498 5.28623 5.31909 5.47328 5.54044 5.58781 5.71389 5.83005 5.94497 6.07624 6.26604 6.36330 6.69899 6.87046 7.13555 7.21312 7.56507 7.59422 8.11034 8.46418 9.16634 9.40677 9.94809 10.71917 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.003730 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.131625 B = 7504.301935 C = 7690.982146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.127 4.127 3 C -0.129 4.129 4 C -0.094 4.094 5 C 0.548 3.452 6 O -0.455 6.455 7 N -0.585 5.585 8 C 0.133 3.867 9 C -0.145 4.145 10 C 0.451 3.549 11 O -0.592 6.592 12 N -0.443 5.443 13 C 0.112 3.888 14 C -0.306 4.306 15 H 0.100 0.900 16 C 0.030 3.970 17 N -0.883 5.883 18 Si 0.928 3.072 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.547 3.453 23 O -0.453 6.453 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 13.631 -5.028 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.133 4.133 4 C -0.151 4.151 5 C 0.337 3.663 6 O -0.326 6.326 7 N -0.327 5.327 8 C 0.014 3.986 9 C -0.186 4.186 10 C 0.238 3.762 11 O -0.477 6.477 12 N -0.162 5.162 13 C -0.032 4.032 14 C -0.434 4.434 15 H 0.118 0.882 16 C -0.173 4.173 17 N -0.522 5.522 18 Si 0.754 3.246 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.207 1.207 22 C 0.336 3.664 23 O -0.323 6.323 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.217 13.014 -5.324 19.995 hybrid contribution 0.808 -0.602 0.496 1.123 sum -13.409 12.412 -4.828 18.899 Atomic orbital electron populations 1.20458 0.86986 1.04182 1.03506 1.23047 0.97861 0.92431 0.99845 1.23039 0.92496 0.97783 1.00007 1.20452 1.02312 0.88745 1.03585 1.19193 0.90155 0.81885 0.75115 1.90797 1.37711 1.61304 1.42793 1.46886 1.09230 1.08861 1.67724 1.21512 0.84628 0.94262 0.98194 1.21827 0.99164 1.00923 0.96699 1.19670 0.85914 0.85977 0.84660 1.90522 1.64439 1.61502 1.31286 1.43580 1.26344 1.42260 1.03980 1.21524 0.99010 0.95536 0.87124 1.19735 1.01328 1.19371 1.02964 0.88184 1.25362 0.99161 0.96617 0.96183 1.70010 1.33084 1.39193 1.09951 0.85838 0.81583 0.78788 0.78356 1.19176 1.20649 1.20706 1.19197 0.82646 0.89407 0.75195 1.90806 1.78952 1.20017 1.42547 0.89606 0.89844 0.89987 0.89534 0.89930 0.90029 0.87937 0.88000 0.90022 0.89824 0.92290 0.91159 0.95629 0.92278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.07 36.01 0.36 -0.22 16 2 C -0.13 -1.25 6.38 -102.02 -0.65 -1.90 16 3 C -0.13 -1.25 6.38 -102.02 -0.65 -1.90 16 4 C -0.09 -0.57 10.07 36.00 0.36 -0.21 16 5 C 0.55 7.60 8.03 -12.39 -0.10 7.50 16 6 O -0.46 -7.49 17.74 5.45 0.10 -7.40 16 7 N -0.59 -8.78 2.64 -117.53 -0.31 -9.09 16 8 C 0.13 2.35 5.11 -4.04 -0.02 2.33 16 9 C -0.14 -2.80 4.55 -27.88 -0.13 -2.93 16 10 C 0.45 11.25 7.63 -10.98 -0.08 11.17 16 11 O -0.59 -16.50 15.67 5.55 0.09 -16.41 16 12 N -0.44 -11.71 3.02 -122.19 -0.37 -12.08 16 13 C 0.11 2.57 8.52 59.85 0.51 3.08 16 14 C -0.31 -8.73 9.29 -14.94 -0.14 -8.86 16 15 H 0.10 2.97 7.41 -52.49 -0.39 2.59 16 16 C 0.03 0.80 5.11 -17.47 -0.09 0.71 16 17 N -0.88 -23.91 10.62 55.50 0.59 -23.32 16 18 Si 0.93 21.08 29.57 -169.99 -5.03 16.05 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 C 0.55 7.68 8.03 -12.39 -0.10 7.58 16 23 O -0.45 -7.63 17.74 5.45 0.10 -7.53 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.33 7.88 -51.93 -0.41 -0.08 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.31 7.88 -51.93 -0.41 -0.10 16 30 H 0.10 1.89 7.97 -51.93 -0.41 1.47 16 31 H 0.10 1.84 7.97 -51.93 -0.41 1.43 16 32 H 0.08 1.48 7.40 -51.93 -0.38 1.09 16 33 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 34 H 0.06 1.41 7.54 -51.93 -0.39 1.02 16 35 H 0.07 1.69 7.06 -51.93 -0.37 1.32 16 36 H 0.03 0.49 6.36 -51.93 -0.33 0.16 16 37 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 LS Contribution 323.92 15.07 4.88 4.88 Total: -1.00 -33.78 323.92 -5.43 -39.21 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.75 Total: -0.66 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: -0.72 Total: 16.34 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.09 Total: -44.49 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: 0.28 Total: -31.34 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.78 -5.43 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900453018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.675 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds