Wall clock time and date at job start Tue Mar 31 2020 02:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34321 * 126.60094 * 2 1 4 4 C 1.50696 * 126.60729 * 359.71260 * 3 2 1 5 5 C 1.47965 * 106.79016 * 179.73889 * 3 2 1 6 6 O 1.21409 * 125.78903 * 179.97438 * 5 3 2 7 7 N 1.34517 * 108.41501 * 359.97438 * 5 3 2 8 8 C 1.46502 * 125.20545 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.47274 * 89.99928 * 8 7 5 10 10 C 1.50706 * 109.46720 * 179.97438 * 9 8 7 11 11 O 1.21293 * 120.00357 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99730 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99946 * 0.02562 * 12 10 9 14 14 C 1.37095 * 120.00027 * 180.02562 * 12 10 9 15 15 H 1.07998 * 119.99828 * 22.40695 * 14 12 10 16 16 C 1.38946 * 119.99993 * 202.40899 * 14 12 10 17 17 N 1.31412 * 120.00442 * 11.60468 * 16 14 12 18 18 Si 1.86805 * 119.99892 * 191.61085 * 16 14 12 19 19 H 1.48498 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47311 * 119.99866 * 18 16 14 21 21 H 1.48502 * 109.46677 * 239.99672 * 18 16 14 22 22 C 1.34518 * 109.58532 * 0.02562 * 7 5 3 23 23 O 1.21404 * 125.78908 * 180.02562 * 22 7 5 24 24 H 1.09004 * 109.47085 * 90.00381 * 1 2 3 25 25 H 1.08997 * 109.47116 * 209.99813 * 1 2 3 26 26 H 1.08996 * 109.47667 * 330.00503 * 1 2 3 27 27 H 1.08995 * 109.47141 * 89.99518 * 4 3 2 28 28 H 1.08995 * 109.47511 * 210.00619 * 4 3 2 29 29 H 1.09004 * 109.47010 * 330.00212 * 4 3 2 30 30 H 1.09006 * 109.46760 * 210.00188 * 8 7 5 31 31 H 1.08995 * 109.46947 * 329.99634 * 8 7 5 32 32 H 1.08999 * 109.47170 * 299.99230 * 9 8 7 33 33 H 1.09003 * 109.47211 * 60.00278 * 9 8 7 34 34 H 1.09000 * 109.47039 * 92.15510 * 13 12 10 35 35 H 1.09001 * 109.47165 * 212.15200 * 13 12 10 36 36 H 1.09003 * 109.47286 * 332.15768 * 13 12 10 37 37 H 0.96999 * 120.00279 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0783 0.0000 4 6 1.8725 2.5210 -0.0061 5 6 3.6999 0.5769 0.0065 6 8 4.7017 1.2628 0.0078 7 7 3.6672 -0.7679 0.0106 8 6 4.8433 -1.6414 0.0180 9 6 5.2470 -1.9409 1.4630 10 6 6.4565 -2.8400 1.4704 11 8 6.9475 -3.2048 0.4231 12 7 6.9932 -3.2378 2.6410 13 6 6.4005 -2.7967 3.9060 14 6 8.0937 -4.0553 2.6479 15 1 8.7430 -4.0940 1.7857 16 6 8.3738 -4.8339 3.7640 17 7 7.4768 -4.9656 4.7153 18 14 10.0257 -5.6936 3.9125 19 1 10.8520 -5.3879 2.7171 20 1 10.7242 -5.2164 5.1329 21 1 9.8136 -7.1605 4.0052 22 6 2.3892 -1.1878 0.0068 23 8 2.0221 -2.3450 0.0095 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.7633 2.8719 1.0201 28 1 2.6215 3.1245 -0.5188 29 1 0.9175 2.6102 -0.5240 30 1 4.6063 -2.5741 -0.4939 31 1 5.6675 -1.1452 -0.4942 32 1 5.4841 -1.0082 1.9748 33 1 4.4227 -2.4372 1.9751 34 1 5.6679 -3.5316 4.2398 35 1 7.1828 -2.6960 4.6583 36 1 5.9096 -1.8343 3.7613 37 1 7.6725 -5.5089 5.4947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900453018.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:27 Heat of formation + Delta-G solvation = -82.650327 kcal Electronic energy + Delta-G solvation = -21734.307539 eV Core-core repulsion = 18284.534726 eV Total energy + Delta-G solvation = -3449.772813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.41673 -40.50197 -39.84955 -37.46371 -36.96087 -36.26185 -33.81981 -32.64043 -30.75174 -28.77662 -27.87394 -26.41846 -25.50193 -24.54613 -21.19244 -21.06810 -20.65334 -19.01945 -18.58841 -17.74308 -17.56900 -17.04974 -16.75193 -16.48532 -16.12070 -15.94985 -15.25586 -14.81706 -14.66340 -14.55620 -14.41010 -14.23942 -13.70658 -13.59515 -13.52357 -13.41520 -13.30105 -13.12381 -12.99764 -12.70811 -12.53879 -12.29293 -12.13670 -11.73623 -11.36200 -11.14473 -11.06805 -10.50396 -10.25264 -9.78249 -8.38818 -6.05399 -1.00444 1.16625 1.32834 1.38822 1.45063 1.53289 1.63021 1.89651 2.24410 2.66537 2.95739 3.02909 3.08665 3.71289 3.73725 3.89898 3.96558 4.07168 4.22004 4.30718 4.48760 4.53379 4.61078 4.75568 4.81545 4.86355 4.89515 4.95444 5.03302 5.19426 5.29229 5.34400 5.39789 5.56395 6.01312 6.07512 6.38851 6.44407 7.07812 7.36450 7.90640 8.63470 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032889 B = 0.003730 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.131625 B = 7504.301935 C = 7690.982146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.114 4.114 3 C -0.113 4.113 4 C -0.093 4.093 5 C 0.541 3.459 6 O -0.487 6.487 7 N -0.594 5.594 8 C 0.142 3.858 9 C -0.126 4.126 10 C 0.439 3.561 11 O -0.630 6.630 12 N -0.459 5.459 13 C 0.122 3.878 14 C -0.348 4.348 15 H 0.074 0.926 16 C -0.002 4.002 17 N -0.896 5.896 18 Si 0.994 3.006 19 H -0.273 1.273 20 H -0.263 1.263 21 H -0.274 1.274 22 C 0.540 3.460 23 O -0.488 6.488 24 H 0.104 0.896 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.797 15.309 -4.309 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.117 4.117 4 C -0.149 4.149 5 C 0.332 3.668 6 O -0.359 6.359 7 N -0.336 5.336 8 C 0.021 3.979 9 C -0.167 4.167 10 C 0.228 3.772 11 O -0.518 6.518 12 N -0.178 5.178 13 C -0.021 4.021 14 C -0.476 4.476 15 H 0.092 0.908 16 C -0.204 4.204 17 N -0.535 5.535 18 Si 0.817 3.183 19 H -0.198 1.198 20 H -0.188 1.188 21 H -0.200 1.200 22 C 0.331 3.669 23 O -0.361 6.361 24 H 0.122 0.878 25 H 0.095 0.905 26 H 0.133 0.867 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.152 14.723 -4.579 22.330 hybrid contribution 1.395 -1.147 0.259 1.825 sum -14.757 13.575 -4.320 20.511 Atomic orbital electron populations 1.20658 0.83786 1.05455 1.05011 1.23165 0.99208 0.89579 0.99858 1.23173 0.89082 0.99708 0.99736 1.20660 1.03630 0.85570 1.05025 1.19993 0.91844 0.81126 0.73840 1.90779 1.39280 1.61676 1.44188 1.46954 1.08995 1.09411 1.68196 1.21138 0.85748 0.94274 0.96767 1.21658 0.96611 1.00257 0.98196 1.20558 0.86804 0.86012 0.83813 1.90482 1.65850 1.62921 1.32562 1.43860 1.26256 1.42246 1.05394 1.21470 0.98204 0.96980 0.85485 1.19713 1.02795 1.21829 1.03266 0.90796 1.26152 1.02482 0.96545 0.95219 1.70076 1.34304 1.38986 1.10095 0.84880 0.77181 0.77757 0.78523 1.19782 1.18804 1.19951 1.20030 0.82757 0.90316 0.73844 1.90786 1.79332 1.21800 1.44180 0.87786 0.90533 0.86673 0.87857 0.90353 0.86693 0.89409 0.89009 0.88286 0.88935 0.93373 0.92460 0.91790 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.07 71.24 0.72 -0.06 16 2 C -0.11 -1.92 6.38 -18.18 -0.12 -2.04 16 3 C -0.11 -1.87 6.38 -18.18 -0.12 -1.99 16 4 C -0.09 -0.74 10.07 71.23 0.72 -0.02 16 5 C 0.54 14.53 8.03 86.86 0.70 15.22 16 6 O -0.49 -15.88 17.74 -3.43 -0.06 -15.94 16 7 N -0.59 -17.80 2.64 -762.72 -2.02 -19.82 16 8 C 0.14 5.17 5.11 86.38 0.44 5.61 16 9 C -0.13 -4.94 4.55 29.85 0.14 -4.80 16 10 C 0.44 22.64 7.63 87.66 0.67 23.31 16 11 O -0.63 -36.82 15.67 -3.07 -0.05 -36.87 16 12 N -0.46 -24.87 3.02 -658.88 -1.99 -26.86 16 13 C 0.12 5.60 8.52 127.77 1.09 6.69 16 14 C -0.35 -20.49 9.29 84.04 0.78 -19.71 16 15 H 0.07 4.63 7.41 -2.91 -0.02 4.61 16 16 C 0.00 -0.11 5.11 84.93 0.43 0.32 16 17 N -0.90 -48.44 10.62 21.66 0.23 -48.21 16 18 Si 0.99 43.34 29.57 68.60 2.03 45.37 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.54 14.82 8.03 86.86 0.70 15.52 16 23 O -0.49 -16.56 17.74 -3.42 -0.06 -16.62 16 24 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.11 0.27 7.88 -2.39 -0.02 0.25 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.11 0.22 7.88 -2.38 -0.02 0.20 16 30 H 0.09 3.42 7.97 -2.38 -0.02 3.40 16 31 H 0.09 3.49 7.97 -2.39 -0.02 3.47 16 32 H 0.10 3.52 7.40 -2.39 -0.02 3.50 16 33 H 0.09 3.46 8.11 -2.39 -0.02 3.44 16 34 H 0.05 2.30 7.54 -2.39 -0.02 2.28 16 35 H 0.06 2.75 7.06 -2.39 -0.02 2.73 16 36 H 0.06 2.39 6.36 -2.39 -0.02 2.38 16 37 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -76.61 323.92 5.32 -71.29 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.09 Total: 9.62 kcal Atomic # 6 Polarization: 31.90 SS G_CDS: 6.15 Total: 38.04 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -3.77 Total: -94.89 kcal Atomic # 8 Polarization: -69.26 SS G_CDS: -0.17 Total: -69.43 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -76.61 5.32 -71.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900453018.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.358 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds