Wall clock time and date at job start Tue Mar 31 2020 02:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34324 * 126.60019 * 2 1 4 4 C 1.50702 * 126.60085 * 359.71583 * 3 2 1 5 5 C 1.47961 * 106.79424 * 179.73794 * 3 2 1 6 6 O 1.21396 * 125.79773 * 179.97438 * 5 3 2 7 7 N 1.34520 * 108.40996 * 0.02562 * 5 3 2 8 8 C 1.46501 * 125.20701 * 180.02562 * 7 5 3 9 9 C 1.53004 * 109.47321 * 89.99604 * 8 7 5 10 10 C 1.50691 * 109.47287 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00316 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99948 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99982 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47086 * 180.02562 * 13 12 10 15 15 H 1.07994 * 119.99720 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99718 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00159 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99533 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47077 * 59.99613 * 18 16 14 20 20 H 1.48501 * 109.46918 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.46924 * 299.99628 * 18 16 14 22 22 C 1.34521 * 109.59101 * 359.97438 * 7 5 3 23 23 O 1.21398 * 125.79619 * 180.02562 * 22 7 5 24 24 H 1.08996 * 109.47507 * 90.00091 * 1 2 3 25 25 H 1.09007 * 109.46838 * 209.99987 * 1 2 3 26 26 H 1.09004 * 109.47500 * 329.99491 * 1 2 3 27 27 H 1.08999 * 109.47129 * 90.00328 * 4 3 2 28 28 H 1.08998 * 109.46823 * 209.99937 * 4 3 2 29 29 H 1.08999 * 109.47564 * 330.00289 * 4 3 2 30 30 H 1.08999 * 109.47489 * 210.00580 * 8 7 5 31 31 H 1.09001 * 109.46892 * 329.99913 * 8 7 5 32 32 H 1.08994 * 109.47196 * 300.00732 * 9 8 7 33 33 H 1.09000 * 109.46199 * 60.00010 * 9 8 7 34 34 H 0.97004 * 120.00130 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.47438 * 300.00319 * 13 12 10 36 36 H 1.08996 * 109.46983 * 60.00899 * 13 12 10 37 37 H 0.97002 * 119.99607 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3079 1.0784 0.0000 4 6 1.8724 2.5211 -0.0060 5 6 3.7000 0.5770 0.0065 6 8 4.7017 1.2628 0.0078 7 7 3.6672 -0.7678 0.0095 8 6 4.8433 -1.6413 0.0165 9 6 5.2466 -1.9420 1.4615 10 6 6.4560 -2.8410 1.4687 11 8 6.9473 -3.2051 0.4213 12 7 6.9922 -3.2397 2.6391 13 6 8.1683 -4.1133 2.6462 14 6 8.5655 -4.4095 4.0694 15 1 7.9988 -3.9888 4.8869 16 6 9.6529 -5.2168 4.3278 17 7 10.3432 -5.7287 3.3324 18 14 10.1456 -5.5834 6.0921 19 1 9.0226 -6.2601 6.7892 20 1 11.3376 -6.4690 6.0992 21 1 10.4680 -4.3130 6.7901 22 6 2.3892 -1.1878 0.0061 23 8 2.0221 -2.3450 0.0080 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.7633 2.8720 1.0202 28 1 2.6214 3.1245 -0.5186 29 1 0.9174 2.6102 -0.5238 30 1 4.6066 -2.5736 -0.4963 31 1 5.6678 -1.1446 -0.4950 32 1 5.4833 -1.0097 1.9741 33 1 4.4220 -2.4386 1.9728 34 1 6.5995 -2.9483 3.4769 35 1 7.9314 -5.0458 2.1338 36 1 8.9927 -3.6168 2.1345 37 1 11.1085 -6.2964 3.5143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907803788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:31 Heat of formation + Delta-G solvation = -80.447440 kcal Electronic energy + Delta-G solvation = -21026.787685 eV Core-core repulsion = 17577.110397 eV Total energy + Delta-G solvation = -3449.677288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.52271 -38.93305 -38.86355 -36.53698 -35.57252 -34.23038 -32.40638 -31.72671 -30.33790 -28.02262 -26.73021 -24.62977 -24.02011 -22.23181 -20.42987 -20.04742 -19.69306 -17.67876 -16.96338 -16.66101 -16.07816 -15.91836 -15.22331 -15.17849 -15.12998 -14.32622 -14.26708 -13.96695 -13.89717 -13.87235 -13.29223 -13.24456 -12.93053 -12.78528 -12.70255 -12.47593 -11.95941 -11.82509 -11.21842 -11.01752 -10.89291 -10.87076 -10.44324 -10.33314 -10.11098 -9.70950 -9.43054 -9.13255 -8.75121 -7.93084 -6.17438 -4.24736 -0.23022 2.10035 2.20708 2.54937 3.25023 3.27592 3.29761 3.31351 3.34779 3.80478 4.06077 4.36222 4.47858 4.57827 4.84449 4.89536 5.01417 5.07459 5.10832 5.15059 5.18583 5.22140 5.37057 5.38564 5.47148 5.63185 5.67128 5.72649 5.90485 6.45514 6.94052 7.27293 7.37201 7.39412 7.49681 7.63481 7.95358 8.56659 8.74137 9.02751 9.41657 10.92750 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.032126 B = 0.002973 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.363562 B = 9416.218715 C = 9506.866217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.127 4.127 3 C -0.127 4.127 4 C -0.096 4.096 5 C 0.548 3.452 6 O -0.453 6.453 7 N -0.586 5.586 8 C 0.131 3.869 9 C -0.159 4.159 10 C 0.505 3.495 11 O -0.556 6.556 12 N -0.709 5.709 13 C 0.249 3.751 14 C -0.545 4.545 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.885 5.885 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.548 3.452 23 O -0.453 6.453 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.391 0.609 35 H 0.028 0.972 36 H 0.028 0.972 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.374 15.883 -5.448 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C -0.131 4.131 4 C -0.152 4.152 5 C 0.337 3.663 6 O -0.323 6.323 7 N -0.329 5.329 8 C 0.011 3.989 9 C -0.200 4.200 10 C 0.289 3.711 11 O -0.436 6.436 12 N -0.357 5.357 13 C 0.128 3.872 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.337 3.663 23 O -0.323 6.323 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.224 0.776 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.380 15.145 -6.233 26.145 hybrid contribution 0.334 -0.248 1.433 1.492 sum -20.047 14.897 -4.800 25.433 Atomic orbital electron populations 1.20471 0.86882 1.04242 1.03607 1.23040 0.97912 0.92295 0.99903 1.23041 0.92335 0.97873 0.99893 1.20470 1.02422 0.88648 1.03661 1.19211 0.90255 0.81775 0.75088 1.90810 1.37684 1.61241 1.42559 1.46829 1.09074 1.08880 1.68093 1.21488 0.85243 0.94768 0.97403 1.21980 0.98653 1.01349 0.98060 1.20066 0.84621 0.81514 0.84886 1.90677 1.63327 1.57969 1.31638 1.46460 1.32355 1.50090 1.06802 1.19139 0.81641 0.88911 0.97471 1.21187 1.14009 1.31702 0.91464 0.91932 1.24954 0.95861 0.95316 0.97864 1.69965 1.18863 1.32296 1.31138 0.86458 0.78075 0.78354 0.83928 1.20051 1.21031 1.20048 1.19212 0.82575 0.89456 0.75087 1.90811 1.78919 1.20006 1.42559 0.89523 0.89824 0.89906 0.89462 0.89855 0.89932 0.87675 0.87677 0.88792 0.88799 0.77593 0.95395 0.95394 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.45 10.07 36.01 0.36 -0.09 16 2 C -0.13 -1.01 6.38 -102.02 -0.65 -1.66 16 3 C -0.13 -1.01 6.38 -102.02 -0.65 -1.66 16 4 C -0.10 -0.45 10.07 36.01 0.36 -0.08 16 5 C 0.55 6.41 8.03 -12.39 -0.10 6.31 16 6 O -0.45 -6.52 17.74 5.46 0.10 -6.43 16 7 N -0.59 -7.24 2.64 -117.53 -0.31 -7.55 16 8 C 0.13 1.86 5.11 -4.04 -0.02 1.84 16 9 C -0.16 -2.34 6.02 -27.89 -0.17 -2.51 16 10 C 0.51 10.12 7.83 -10.99 -0.09 10.04 16 11 O -0.56 -13.24 15.98 5.56 0.09 -13.15 16 12 N -0.71 -15.13 5.55 -61.47 -0.34 -15.47 16 13 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 14 C -0.55 -14.95 9.28 -34.44 -0.32 -15.27 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 18 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.55 6.41 8.03 -12.39 -0.10 6.31 16 23 O -0.45 -6.52 17.74 5.46 0.10 -6.43 16 24 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.22 7.88 -51.93 -0.41 -0.19 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.21 7.88 -51.93 -0.41 -0.20 16 30 H 0.10 1.56 7.97 -51.93 -0.41 1.15 16 31 H 0.10 1.56 7.97 -51.93 -0.41 1.15 16 32 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 35 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -34.56 332.93 -6.03 -40.60 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -4.90 Total: 1.43 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -1.49 Total: 11.56 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.08 Total: -48.58 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: 0.28 Total: -26.01 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.56 -6.03 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907803788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.852 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds