Wall clock time and date at job start Tue Mar 31 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34440 * 125.45627 * 2 1 4 4 C 1.46741 * 106.37782 * 179.97438 * 3 2 1 5 5 C 1.47103 * 127.02652 * 179.97438 * 4 3 2 6 6 O 1.21549 * 119.99918 * 180.02562 * 5 4 3 7 7 O 1.34788 * 120.00130 * 0.02901 * 5 4 3 8 8 C 1.45200 * 116.99930 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46831 * 179.97438 * 8 7 5 10 10 O 1.21281 * 120.00035 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00106 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47178 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00011 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99778 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99833 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00015 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47215 * 90.00324 * 17 15 13 19 19 H 1.48500 * 109.47076 * 210.00147 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00009 * 17 15 13 21 21 C 1.37848 * 105.94799 * 0.02562 * 4 3 2 22 22 C 1.50703 * 125.89415 * 179.97438 * 21 4 3 23 23 N 1.34626 * 108.20636 * 0.26227 * 21 4 3 24 24 H 0.97000 * 124.80625 * 179.71920 * 23 21 4 25 25 H 1.09002 * 109.47090 * 90.02505 * 1 2 3 26 26 H 1.09002 * 109.46952 * 210.02096 * 1 2 3 27 27 H 1.09001 * 109.47321 * 330.02512 * 1 2 3 28 28 H 1.08000 * 126.81182 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.46919 * 299.99507 * 8 7 5 30 30 H 1.08995 * 109.47494 * 59.99901 * 8 7 5 31 31 H 0.96997 * 119.99953 * 0.02562 * 11 9 8 32 32 H 1.09007 * 109.46637 * 300.00105 * 12 11 9 33 33 H 1.09000 * 109.46904 * 59.99440 * 12 11 9 34 34 H 0.97000 * 119.99596 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47152 * 89.99938 * 22 21 4 36 36 H 1.09001 * 109.46980 * 330.00038 * 22 21 4 37 37 H 1.09004 * 109.47113 * 210.00019 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6154 0.0006 5 6 4.8947 1.4358 0.0003 6 8 5.9862 0.9009 0.0005 7 8 4.8031 2.7806 0.0000 8 6 6.0491 3.5261 -0.0009 9 6 5.7506 5.0033 -0.0018 10 8 4.6010 5.3896 -0.0012 11 7 6.7612 5.8950 -0.0021 12 6 6.4711 7.3310 -0.0025 13 6 7.7642 8.1048 -0.0035 14 1 8.7078 7.5794 -0.0034 15 6 7.7426 9.4834 -0.0034 16 7 8.8712 10.1586 -0.0048 17 14 6.1105 10.3919 -0.0028 18 1 5.6785 10.6327 1.3975 19 1 6.2675 11.6921 -0.7028 20 1 5.0880 9.5733 -0.7025 21 6 3.5984 -0.7610 0.0004 22 6 4.7691 -1.7099 0.0003 23 7 2.2984 -1.1111 -0.0062 24 1 1.9710 -2.0242 -0.0117 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.9579 2.1238 -0.0004 29 1 6.6251 3.2720 0.8889 30 1 6.6243 3.2715 -0.8910 31 1 7.6806 5.5860 -0.0022 32 1 5.8953 7.5850 -0.8925 33 1 5.8955 7.5855 0.8875 34 1 8.8560 11.1285 -0.0051 35 1 5.0513 -1.9388 1.0279 36 1 5.6118 -1.2471 -0.5134 37 1 4.4910 -2.6300 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914965852.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:32 Heat of formation + Delta-G solvation = -87.701788 kcal Electronic energy + Delta-G solvation = -20718.023459 eV Core-core repulsion = 17268.031598 eV Total energy + Delta-G solvation = -3449.991861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.58360 -40.00886 -38.66550 -36.13908 -34.30346 -32.94474 -32.38985 -31.54388 -29.58253 -29.30220 -27.16288 -25.25827 -23.08096 -21.94342 -20.69404 -20.03851 -19.71254 -17.60342 -17.41295 -16.54800 -16.47326 -16.20604 -15.32841 -15.28535 -14.98217 -14.47590 -14.05047 -13.94283 -13.59729 -13.57629 -13.08688 -12.97525 -12.83791 -12.58778 -12.43211 -12.40491 -12.30995 -11.98238 -11.73020 -11.03143 -10.77697 -10.56883 -10.42434 -9.96832 -9.50363 -9.25374 -9.12919 -8.78211 -8.30511 -8.20369 -6.21090 -4.23756 1.32742 2.09684 2.45499 2.94420 3.11098 3.22987 3.28298 3.34901 3.43270 4.04338 4.34131 4.46347 4.55852 4.75961 4.94340 4.99948 5.13930 5.19959 5.21409 5.26133 5.30448 5.32167 5.34915 5.53407 5.66319 5.69549 5.95081 6.46836 6.52964 6.68518 6.78728 7.05719 7.10188 7.16627 7.36304 7.91613 8.11117 8.46754 8.73494 8.86338 9.38356 10.90750 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.002979 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.825580 B = 9395.581519 C =10243.354184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.001 4.001 3 C -0.134 4.134 4 C -0.222 4.222 5 C 0.541 3.459 6 O -0.525 6.525 7 O -0.324 6.324 8 C 0.051 3.949 9 C 0.502 3.498 10 O -0.536 6.536 11 N -0.701 5.701 12 C 0.222 3.778 13 C -0.545 4.545 14 H 0.081 0.919 15 C 0.078 3.922 16 N -0.892 5.892 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.260 1.260 21 C 0.116 3.884 22 C -0.097 4.097 23 N -0.544 5.544 24 H 0.416 0.584 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.399 0.601 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.268 0.732 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 -25.471 -0.034 28.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.157 4.157 4 C -0.230 4.230 5 C 0.388 3.612 6 O -0.416 6.416 7 O -0.239 6.239 8 C -0.026 4.026 9 C 0.286 3.714 10 O -0.414 6.414 11 N -0.351 5.351 12 C 0.100 3.900 13 C -0.582 4.582 14 H 0.099 0.901 15 C -0.126 4.126 16 N -0.529 5.529 17 Si 0.703 3.297 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.184 1.184 21 C -0.003 4.003 22 C -0.154 4.154 23 N -0.141 5.141 24 H 0.253 0.747 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.173 0.827 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.233 0.767 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.879 -25.178 -0.040 28.750 hybrid contribution -0.209 0.098 0.034 0.233 sum -14.088 -25.081 -0.006 28.766 Atomic orbital electron populations 1.20334 0.87462 1.03461 1.02845 1.20258 0.93709 0.85698 1.11173 1.22002 0.90207 0.98451 1.05064 1.19320 0.91624 0.90868 1.21205 1.20118 0.88202 0.80719 0.72173 1.90790 1.29161 1.73509 1.48162 1.86626 1.34646 1.18670 1.83946 1.22761 0.85035 0.90159 1.04695 1.19962 0.86329 0.86848 0.78285 1.90691 1.20546 1.80535 1.49610 1.46054 1.08361 1.07997 1.72721 1.19542 0.97836 0.75550 0.97030 1.21079 0.92001 0.91708 1.53460 0.90126 1.24792 0.96734 0.97256 0.93830 1.69881 1.26056 1.07619 1.49328 0.86813 0.84252 0.79528 0.79089 1.19806 1.20889 1.18430 1.20524 0.85141 0.93632 1.01021 1.20623 0.94507 0.96516 1.03775 1.41480 1.05144 1.09001 1.58455 0.74703 0.90912 0.91810 0.89717 0.82725 0.88425 0.88437 0.76735 0.95461 0.95913 0.92228 0.90048 0.87962 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.41 36.00 0.37 -0.09 16 2 C 0.00 0.00 7.11 -81.89 -0.58 -0.59 16 3 C -0.13 -1.61 10.89 -37.49 -0.41 -2.02 16 4 C -0.22 -2.95 6.33 -103.01 -0.65 -3.60 16 5 C 0.54 8.40 7.95 34.33 0.27 8.67 16 6 O -0.52 -8.40 14.67 -19.30 -0.28 -8.69 16 7 O -0.32 -5.54 9.66 -47.42 -0.46 -6.00 16 8 C 0.05 0.81 5.96 36.01 0.21 1.02 16 9 C 0.50 9.99 7.91 -10.98 -0.09 9.91 16 10 O -0.54 -12.79 16.50 -14.10 -0.23 -13.02 16 11 N -0.70 -14.32 5.55 -61.47 -0.34 -14.66 16 12 C 0.22 5.48 4.50 -5.19 -0.02 5.46 16 13 C -0.54 -14.94 9.83 -34.44 -0.34 -15.28 16 14 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 17 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 C 0.12 1.16 7.22 -81.51 -0.59 0.57 16 22 C -0.10 -0.76 9.90 36.01 0.36 -0.40 16 23 N -0.54 -4.10 5.89 -5.20 -0.03 -4.13 16 24 H 0.42 1.60 8.96 -40.82 -0.37 1.24 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.16 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 31 H 0.40 7.04 8.32 -40.82 -0.34 6.70 16 32 H 0.03 0.71 7.20 -51.92 -0.37 0.33 16 33 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.00 6.51 -51.93 -0.34 0.66 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -35.34 327.67 -6.63 -41.98 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.77 Total: 2.76 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: -1.56 Total: 5.76 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.40 Total: -44.52 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.97 Total: -27.71 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.34 -6.63 -41.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914965852.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.726 kcal (2) G-P(sol) polarization free energy of solvation -35.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds