Wall clock time and date at job start Tue Mar 31 2020 01:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34440 * 125.45627 * 2 1 4 4 C 1.46741 * 106.37782 * 179.97438 * 3 2 1 5 5 C 1.47103 * 127.02652 * 179.97438 * 4 3 2 6 6 O 1.21549 * 119.99918 * 180.02562 * 5 4 3 7 7 O 1.34788 * 120.00130 * 0.02901 * 5 4 3 8 8 C 1.45200 * 116.99930 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.46831 * 179.97438 * 8 7 5 10 10 O 1.21281 * 120.00035 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00106 * 180.02562 * 11 9 8 13 13 C 1.50699 * 109.47178 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00011 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99778 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99833 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00015 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47215 * 90.00324 * 17 15 13 19 19 H 1.48500 * 109.47076 * 210.00147 * 17 15 13 20 20 H 1.48499 * 109.47321 * 330.00009 * 17 15 13 21 21 C 1.37848 * 105.94799 * 0.02562 * 4 3 2 22 22 C 1.50703 * 125.89415 * 179.97438 * 21 4 3 23 23 N 1.34626 * 108.20636 * 0.26227 * 21 4 3 24 24 H 0.97000 * 124.80625 * 179.71920 * 23 21 4 25 25 H 1.09002 * 109.47090 * 90.02505 * 1 2 3 26 26 H 1.09002 * 109.46952 * 210.02096 * 1 2 3 27 27 H 1.09001 * 109.47321 * 330.02512 * 1 2 3 28 28 H 1.08000 * 126.81182 * 359.97438 * 3 2 1 29 29 H 1.08995 * 109.46919 * 299.99507 * 8 7 5 30 30 H 1.08995 * 109.47494 * 59.99901 * 8 7 5 31 31 H 0.96997 * 119.99953 * 0.02562 * 11 9 8 32 32 H 1.09007 * 109.46637 * 300.00105 * 12 11 9 33 33 H 1.09000 * 109.46904 * 59.99440 * 12 11 9 34 34 H 0.97000 * 119.99596 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47152 * 89.99938 * 22 21 4 36 36 H 1.09001 * 109.46980 * 330.00038 * 22 21 4 37 37 H 1.09004 * 109.47113 * 210.00019 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2868 1.0951 0.0000 4 6 3.6736 0.6154 0.0006 5 6 4.8947 1.4358 0.0003 6 8 5.9862 0.9009 0.0005 7 8 4.8031 2.7806 0.0000 8 6 6.0491 3.5261 -0.0009 9 6 5.7506 5.0033 -0.0018 10 8 4.6010 5.3896 -0.0012 11 7 6.7612 5.8950 -0.0021 12 6 6.4711 7.3310 -0.0025 13 6 7.7642 8.1048 -0.0035 14 1 8.7078 7.5794 -0.0034 15 6 7.7426 9.4834 -0.0034 16 7 8.8712 10.1586 -0.0048 17 14 6.1105 10.3919 -0.0028 18 1 5.6785 10.6327 1.3975 19 1 6.2675 11.6921 -0.7028 20 1 5.0880 9.5733 -0.7025 21 6 3.5984 -0.7610 0.0004 22 6 4.7691 -1.7099 0.0003 23 7 2.2984 -1.1111 -0.0062 24 1 1.9710 -2.0242 -0.0117 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.9579 2.1238 -0.0004 29 1 6.6251 3.2720 0.8889 30 1 6.6243 3.2715 -0.8910 31 1 7.6806 5.5860 -0.0022 32 1 5.8953 7.5850 -0.8925 33 1 5.8955 7.5855 0.8875 34 1 8.8560 11.1285 -0.0051 35 1 5.0513 -1.9388 1.0279 36 1 5.6118 -1.2471 -0.5134 37 1 4.4910 -2.6300 -0.5138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914965852.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:54:32 Heat of formation + Delta-G solvation = -112.595057 kcal Electronic energy + Delta-G solvation = -20719.102912 eV Core-core repulsion = 17268.031598 eV Total energy + Delta-G solvation = -3451.071314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.38218 -41.26936 -40.24051 -37.38772 -36.19501 -34.46070 -33.60148 -32.41411 -31.03870 -30.05159 -28.84384 -26.13737 -24.34777 -23.57013 -21.73031 -21.46298 -20.76058 -19.26257 -18.64020 -17.95902 -17.73211 -17.41668 -16.83388 -16.56329 -16.32286 -15.79005 -15.74802 -14.83269 -14.66749 -14.54833 -14.35101 -14.25748 -14.05384 -13.70178 -13.67060 -13.52686 -13.09026 -13.07961 -12.93864 -12.70535 -12.46017 -11.93067 -11.83542 -11.67304 -11.55036 -10.95987 -10.92036 -10.04123 -9.96614 -9.06000 -8.39825 -6.47343 0.37762 1.29308 1.31525 1.34199 1.37530 1.48654 1.52011 2.16254 2.19262 2.28814 2.60683 2.95438 3.66831 3.76711 3.86670 4.04110 4.07852 4.12743 4.17864 4.48133 4.57435 4.70681 4.75131 4.81755 4.87801 5.00441 5.05575 5.13226 5.15725 5.23761 5.39273 5.42954 5.68503 5.89590 6.06408 6.51959 6.53833 6.68964 6.81136 7.11892 7.27636 8.74792 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.031853 B = 0.002979 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.825580 B = 9395.581519 C =10243.354184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.019 3.981 3 C -0.174 4.174 4 C -0.268 4.268 5 C 0.537 3.463 6 O -0.538 6.538 7 O -0.346 6.346 8 C 0.059 3.941 9 C 0.506 3.494 10 O -0.578 6.578 11 N -0.697 5.697 12 C 0.232 3.768 13 C -0.548 4.548 14 H 0.062 0.938 15 C 0.027 3.973 16 N -0.930 5.930 17 Si 0.937 3.063 18 H -0.264 1.264 19 H -0.273 1.273 20 H -0.260 1.260 21 C 0.130 3.870 22 C -0.095 4.095 23 N -0.525 5.525 24 H 0.437 0.563 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.413 0.587 32 H 0.017 0.983 33 H 0.016 0.984 34 H 0.273 0.727 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 -27.884 0.018 31.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.197 4.197 4 C -0.276 4.276 5 C 0.386 3.614 6 O -0.430 6.430 7 O -0.262 6.262 8 C -0.018 4.018 9 C 0.291 3.709 10 O -0.458 6.458 11 N -0.348 5.348 12 C 0.109 3.891 13 C -0.586 4.586 14 H 0.080 0.920 15 C -0.174 4.174 16 N -0.569 5.569 17 Si 0.761 3.239 18 H -0.189 1.189 19 H -0.198 1.198 20 H -0.184 1.184 21 C 0.009 3.991 22 C -0.152 4.152 23 N -0.123 5.123 24 H 0.279 0.721 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.157 0.843 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.249 0.751 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.552 -27.643 0.013 31.717 hybrid contribution 0.314 0.733 0.015 0.798 sum -15.237 -26.910 0.028 30.924 Atomic orbital electron populations 1.20462 0.84799 1.04746 1.03998 1.20643 0.95116 0.85039 1.08164 1.22016 0.90581 0.98974 1.08092 1.19509 0.91276 0.92285 1.24517 1.20519 0.89033 0.80043 0.71803 1.90765 1.29663 1.73348 1.49235 1.86619 1.35202 1.19882 1.84458 1.22687 0.85165 0.86968 1.06931 1.20567 0.85277 0.88430 0.76581 1.90669 1.22236 1.81555 1.51352 1.45848 1.09520 1.06631 1.72805 1.19179 0.96095 0.77706 0.96125 1.21266 0.92369 0.92116 1.52817 0.92028 1.25596 0.99989 0.98260 0.93534 1.69980 1.28132 1.08228 1.50567 0.85857 0.80025 0.78517 0.79512 1.18923 1.19792 1.18374 1.20797 0.86631 0.92802 0.98852 1.20678 0.92860 0.97121 1.04563 1.41481 1.04139 1.09933 1.56779 0.72117 0.89712 0.89256 0.89733 0.84283 0.86070 0.86097 0.75065 0.96519 0.96615 0.91794 0.89069 0.90021 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.41 71.23 0.74 0.05 16 2 C 0.02 0.31 7.11 40.97 0.29 0.60 16 3 C -0.17 -4.21 10.89 23.62 0.26 -3.95 16 4 C -0.27 -7.10 6.33 -18.82 -0.12 -7.22 16 5 C 0.54 16.84 7.95 70.15 0.56 17.39 16 6 O -0.54 -17.09 14.67 19.68 0.29 -16.80 16 7 O -0.35 -12.01 9.66 -50.60 -0.49 -12.50 16 8 C 0.06 1.84 5.96 71.24 0.42 2.27 16 9 C 0.51 20.11 7.91 87.66 0.69 20.80 16 10 O -0.58 -27.97 16.50 15.77 0.26 -27.71 16 11 N -0.70 -28.37 5.55 -466.77 -2.59 -30.96 16 12 C 0.23 11.50 4.50 85.63 0.38 11.89 16 13 C -0.55 -30.35 9.83 25.60 0.25 -30.10 16 14 H 0.06 3.57 7.84 -2.91 -0.02 3.54 16 15 C 0.03 1.51 5.47 84.65 0.46 1.98 16 16 N -0.93 -55.77 13.96 21.45 0.30 -55.47 16 17 Si 0.94 44.23 27.47 68.60 1.88 46.11 16 18 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.26 -12.14 6.54 99.48 0.65 -11.49 16 21 C 0.13 2.39 7.22 42.04 0.30 2.69 16 22 C -0.10 -1.26 9.90 71.24 0.71 -0.56 16 23 N -0.53 -6.42 5.89 -170.37 -1.00 -7.42 16 24 H 0.44 1.61 8.96 -92.71 -0.83 0.77 16 25 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 29 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 30 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.41 14.41 8.32 -92.71 -0.77 13.64 16 32 H 0.02 0.87 7.20 -2.38 -0.02 0.86 16 33 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.50 6.51 -2.39 -0.02 1.48 16 37 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -77.69 327.67 3.06 -74.63 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -0.54 Total: 14.29 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 4.95 Total: 15.84 kcal Atomic # 7 Polarization: -90.56 SS G_CDS: -3.29 Total: -93.85 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: 0.06 Total: -57.01 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.88 Total: 46.11 kcal Total: -77.69 3.06 -74.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914965852.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.968 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds