Wall clock time and date at job start Tue Mar 31 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47476 * 2 1 4 4 C 1.53492 * 114.21204 * 174.99939 * 3 2 1 5 5 N 1.47067 * 87.98536 * 139.85120 * 4 3 2 6 6 C 1.34776 * 136.05254 * 152.84169 * 5 4 3 7 7 O 1.21587 * 120.00444 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99746 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99732 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47381 * 35.00069 * 9 8 6 11 11 C 1.50699 * 109.46939 * 155.00269 * 9 8 6 12 12 H 1.08003 * 120.00271 * 359.97438 * 11 9 8 13 13 C 1.37879 * 120.00161 * 179.97438 * 11 9 8 14 14 N 1.31509 * 119.99895 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00268 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46680 * 60.00301 * 15 13 11 17 17 H 1.48492 * 109.47298 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46944 * 300.00817 * 15 13 11 19 19 C 1.53006 * 109.47249 * 274.99921 * 9 8 6 20 20 F 1.39900 * 109.46764 * 60.00158 * 19 9 8 21 21 F 1.39897 * 109.47129 * 180.02562 * 19 9 8 22 22 F 1.39903 * 109.46814 * 300.00629 * 19 9 8 23 23 C 1.47062 * 87.88748 * 333.10272 * 5 4 3 24 24 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46940 * 300.00124 * 1 2 3 26 26 H 1.09004 * 109.46635 * 60.00162 * 1 2 3 27 27 H 1.09004 * 109.47218 * 240.00349 * 2 1 3 28 28 H 1.08995 * 109.47346 * 120.00160 * 2 1 3 29 29 H 1.09006 * 113.27769 * 41.92788 * 3 2 1 30 30 H 1.09003 * 113.46235 * 25.07303 * 4 3 2 31 31 H 1.08998 * 113.52052 * 254.64539 * 4 3 2 32 32 H 0.96998 * 119.99903 * 0.02562 * 8 6 5 33 33 H 0.97006 * 120.00358 * 179.97438 * 14 13 11 34 34 H 1.09004 * 113.46631 * 141.67649 * 23 5 4 35 35 H 1.09004 * 113.46842 * 272.11724 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5647 1.5710 0.1220 5 7 3.5001 2.6582 -0.8663 6 6 4.2342 3.7505 -1.1566 7 8 5.2273 4.0069 -0.5036 8 7 3.8675 4.5588 -2.1709 9 6 4.6658 5.7459 -2.4868 10 1 5.7201 5.5322 -2.3110 11 6 4.4629 6.1173 -3.9332 12 1 3.8054 5.5277 -4.5550 13 6 5.1166 7.2097 -4.4627 14 7 5.9176 7.9272 -3.7057 15 14 4.8657 7.6696 -6.2558 16 1 3.4293 7.9600 -6.4959 17 1 5.6747 8.8729 -6.5760 18 1 5.2939 6.5410 -7.1209 19 6 4.2255 6.9087 -1.5952 20 9 4.4138 6.5639 -0.2525 21 9 4.9874 8.0424 -1.8973 22 9 2.8723 7.1830 -1.8209 23 6 2.2784 2.0324 -1.3941 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.4813 2.0970 0.6691 30 1 4.1041 0.6929 -0.2332 31 1 3.8961 1.8990 1.1072 32 1 3.0751 4.3545 -2.6916 33 1 6.3778 8.6956 -4.0783 34 1 1.5173 2.7523 -1.6951 35 1 2.4717 1.2785 -2.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932897711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:05 Heat of formation + Delta-G solvation = -134.370205 kcal Electronic energy + Delta-G solvation = -23114.092981 eV Core-core repulsion = 19120.220685 eV Total energy + Delta-G solvation = -3993.872295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.29046 -45.94205 -45.56215 -40.25059 -37.94383 -34.55343 -33.41998 -32.48085 -29.33583 -27.36982 -25.92308 -24.53411 -23.61827 -21.41080 -20.44650 -19.32580 -17.95479 -16.83941 -16.73881 -16.57871 -15.92785 -15.65806 -15.34580 -14.77505 -14.44766 -14.05085 -13.73251 -13.21332 -12.98993 -12.83313 -12.54044 -12.48650 -12.34302 -12.27523 -12.21385 -11.92122 -11.81467 -11.76691 -11.20951 -11.14726 -11.04845 -10.85300 -10.76086 -10.37973 -10.35793 -9.64831 -9.46346 -8.70351 -8.49413 -8.06976 -6.21201 -4.45223 2.90534 3.20976 3.25762 3.27891 3.77401 4.17199 4.20654 4.46633 4.63753 4.72743 4.94461 4.95778 5.04664 5.17152 5.40382 5.44820 5.52528 5.58514 5.65894 5.77324 5.84042 5.90178 5.92745 5.94326 6.01976 6.25198 6.29069 6.94340 7.26966 7.47172 7.65186 7.85381 8.51784 8.67121 9.17294 9.29228 10.70399 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024633 B = 0.005046 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.391970 B = 5547.202619 C = 6025.931778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.127 4.127 4 C 0.130 3.870 5 N -0.671 5.671 6 C 0.729 3.271 7 O -0.581 6.581 8 N -0.723 5.723 9 C 0.262 3.738 10 H 0.085 0.915 11 C -0.552 4.552 12 H 0.076 0.924 13 C 0.065 3.935 14 N -0.840 5.840 15 Si 0.916 3.084 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.416 3.584 20 F -0.216 7.216 21 F -0.137 7.137 22 F -0.210 7.210 23 C 0.104 3.896 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.393 0.607 33 H 0.269 0.731 34 H 0.073 0.927 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.223 -12.487 3.862 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.146 4.146 4 C 0.006 3.994 5 N -0.412 5.412 6 C 0.432 3.568 7 O -0.458 6.458 8 N -0.375 5.375 9 C 0.156 3.844 10 H 0.102 0.898 11 C -0.589 4.589 12 H 0.094 0.906 13 C -0.144 4.144 14 N -0.473 5.473 15 Si 0.742 3.258 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.359 3.641 20 F -0.198 7.198 21 F -0.118 7.118 22 F -0.192 7.192 23 C -0.019 4.019 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.227 0.773 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.160 -11.832 4.301 15.003 hybrid contribution -0.592 0.488 -1.006 1.265 sum -8.752 -11.343 3.295 14.701 Atomic orbital electron populations 1.21757 0.95536 1.01519 1.02086 1.21408 0.96134 0.94892 1.02460 1.23043 0.96238 0.97342 0.97967 1.22769 0.94729 0.88531 0.93409 1.48605 1.29684 1.24539 1.38349 1.15409 0.81711 0.78557 0.81076 1.90918 1.27083 1.74285 1.53529 1.45206 1.31590 1.26940 1.33729 1.19621 0.93634 0.77184 0.93925 0.89754 1.20824 1.30871 1.14810 0.92360 0.90608 1.25078 0.94741 0.95266 0.99297 1.70398 1.25535 1.16827 1.34515 0.86261 0.78508 0.78035 0.82950 1.19848 1.20851 1.19813 1.23176 0.74353 0.88290 0.78262 1.93073 1.95024 1.92549 1.39191 1.93399 1.74088 1.52939 1.91418 1.92980 1.36540 1.95051 1.94658 1.22952 0.86702 0.95982 0.96304 0.92824 0.92666 0.92520 0.91473 0.91372 0.87923 0.90498 0.90739 0.77331 0.92060 0.90883 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.90 37.16 0.37 -0.62 16 2 C -0.11 -0.78 5.86 -26.73 -0.16 -0.93 16 3 C -0.13 -1.21 3.98 -90.24 -0.36 -1.57 16 4 C 0.13 1.61 8.20 -8.51 -0.07 1.54 16 5 N -0.67 -10.99 3.69 -191.18 -0.71 -11.70 16 6 C 0.73 15.93 8.33 -86.91 -0.72 15.21 16 7 O -0.58 -15.10 15.69 5.29 0.08 -15.01 16 8 N -0.72 -15.87 4.99 -59.81 -0.30 -16.16 16 9 C 0.26 6.80 2.21 -69.08 -0.15 6.65 16 10 H 0.08 2.45 7.58 -51.93 -0.39 2.05 16 11 C -0.55 -14.38 8.46 -34.44 -0.29 -14.67 16 12 H 0.08 1.86 7.74 -52.48 -0.41 1.45 16 13 C 0.07 1.72 5.20 -17.82 -0.09 1.62 16 14 N -0.84 -23.38 9.50 55.43 0.53 -22.85 16 15 Si 0.92 20.28 29.54 -169.99 -5.02 15.26 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 C 0.42 11.07 2.81 37.16 0.10 11.18 16 20 F -0.22 -5.79 15.67 2.25 0.04 -5.76 16 21 F -0.14 -3.90 12.91 2.25 0.03 -3.87 16 22 F -0.21 -5.37 16.94 2.25 0.04 -5.33 16 23 C 0.10 1.19 7.86 -8.64 -0.07 1.12 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.44 7.83 -51.93 -0.41 0.04 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.10 1.01 8.12 -51.93 -0.42 0.59 16 30 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.39 7.57 8.25 -40.82 -0.34 7.23 16 33 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.78 7.89 -51.93 -0.41 0.37 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -31.96 305.72 -6.61 -38.58 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.47 Total: 2.71 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: -1.44 Total: 19.53 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.48 Total: -50.71 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.01 kcal Atomic # 9 Polarization: -15.06 SS G_CDS: 0.10 Total: -14.95 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.96 -6.61 -38.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.794 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds