Wall clock time and date at job start Tue Mar 31 2020 02:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47476 * 2 1 4 4 C 1.53492 * 114.21204 * 174.99939 * 3 2 1 5 5 N 1.47067 * 87.98536 * 139.85120 * 4 3 2 6 6 C 1.34776 * 136.05254 * 152.84169 * 5 4 3 7 7 O 1.21587 * 120.00444 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99746 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99732 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47381 * 35.00069 * 9 8 6 11 11 C 1.50699 * 109.46939 * 155.00269 * 9 8 6 12 12 H 1.08003 * 120.00271 * 359.97438 * 11 9 8 13 13 C 1.37879 * 120.00161 * 179.97438 * 11 9 8 14 14 N 1.31509 * 119.99895 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 120.00268 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46680 * 60.00301 * 15 13 11 17 17 H 1.48492 * 109.47298 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46944 * 300.00817 * 15 13 11 19 19 C 1.53006 * 109.47249 * 274.99921 * 9 8 6 20 20 F 1.39900 * 109.46764 * 60.00158 * 19 9 8 21 21 F 1.39897 * 109.47129 * 180.02562 * 19 9 8 22 22 F 1.39903 * 109.46814 * 300.00629 * 19 9 8 23 23 C 1.47062 * 87.88748 * 333.10272 * 5 4 3 24 24 H 1.09001 * 109.46949 * 179.97438 * 1 2 3 25 25 H 1.08990 * 109.46940 * 300.00124 * 1 2 3 26 26 H 1.09004 * 109.46635 * 60.00162 * 1 2 3 27 27 H 1.09004 * 109.47218 * 240.00349 * 2 1 3 28 28 H 1.08995 * 109.47346 * 120.00160 * 2 1 3 29 29 H 1.09006 * 113.27769 * 41.92788 * 3 2 1 30 30 H 1.09003 * 113.46235 * 25.07303 * 4 3 2 31 31 H 1.08998 * 113.52052 * 254.64539 * 4 3 2 32 32 H 0.96998 * 119.99903 * 0.02562 * 8 6 5 33 33 H 0.97006 * 120.00358 * 179.97438 * 14 13 11 34 34 H 1.09004 * 113.46631 * 141.67649 * 23 5 4 35 35 H 1.09004 * 113.46842 * 272.11724 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5647 1.5710 0.1220 5 7 3.5001 2.6582 -0.8663 6 6 4.2342 3.7505 -1.1566 7 8 5.2273 4.0069 -0.5036 8 7 3.8675 4.5588 -2.1709 9 6 4.6658 5.7459 -2.4868 10 1 5.7201 5.5322 -2.3110 11 6 4.4629 6.1173 -3.9332 12 1 3.8054 5.5277 -4.5550 13 6 5.1166 7.2097 -4.4627 14 7 5.9176 7.9272 -3.7057 15 14 4.8657 7.6696 -6.2558 16 1 3.4293 7.9600 -6.4959 17 1 5.6747 8.8729 -6.5760 18 1 5.2939 6.5410 -7.1209 19 6 4.2255 6.9087 -1.5952 20 9 4.4138 6.5639 -0.2525 21 9 4.9874 8.0424 -1.8973 22 9 2.8723 7.1830 -1.8209 23 6 2.2784 2.0324 -1.3941 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.4813 2.0970 0.6691 30 1 4.1041 0.6929 -0.2332 31 1 3.8961 1.8990 1.1072 32 1 3.0751 4.3545 -2.6916 33 1 6.3778 8.6956 -4.0783 34 1 1.5173 2.7523 -1.6951 35 1 2.4717 1.2785 -2.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932897711.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:21:05 Heat of formation + Delta-G solvation = -155.444818 kcal Electronic energy + Delta-G solvation = -23115.006845 eV Core-core repulsion = 19120.220685 eV Total energy + Delta-G solvation = -3994.786159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.43773 -48.07317 -47.74696 -41.51187 -39.44322 -36.46503 -34.55860 -34.09013 -30.92722 -28.81082 -26.92631 -26.58657 -24.61668 -23.18070 -21.60820 -20.76596 -19.46953 -18.90170 -18.73905 -18.58088 -17.71893 -17.04000 -16.79166 -16.53967 -15.56046 -15.23953 -15.11834 -14.99712 -14.76802 -14.49754 -14.41543 -14.31258 -14.11378 -13.99310 -13.84115 -13.40836 -13.13361 -12.97475 -12.77473 -12.62045 -12.57751 -12.22827 -11.88993 -11.79805 -11.61684 -11.20454 -11.07329 -10.68914 -10.22638 -9.52814 -8.21754 -6.53633 1.43831 1.49400 1.50903 1.59366 2.08162 2.35963 2.53086 2.93001 2.98280 3.35376 3.75332 3.84328 3.97832 4.06595 4.15345 4.34893 4.47507 4.58632 4.60162 4.64677 4.76452 4.81510 4.95731 5.01105 5.26037 5.31775 5.40621 5.42714 5.53772 5.59974 5.63434 6.33094 6.51628 7.07207 7.16705 7.61158 8.71119 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024633 B = 0.005046 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.391970 B = 5547.202619 C = 6025.931778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.103 4.103 4 C 0.119 3.881 5 N -0.678 5.678 6 C 0.720 3.280 7 O -0.634 6.634 8 N -0.717 5.717 9 C 0.270 3.730 10 H 0.044 0.956 11 C -0.562 4.562 12 H 0.091 0.909 13 C 0.015 3.985 14 N -0.875 5.875 15 Si 0.987 3.013 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.262 1.262 19 C 0.413 3.587 20 F -0.220 7.220 21 F -0.149 7.149 22 F -0.203 7.203 23 C 0.101 3.899 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.407 0.593 33 H 0.269 0.731 34 H 0.079 0.921 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 -14.226 2.652 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 C -0.122 4.122 4 C -0.003 4.003 5 N -0.417 5.417 6 C 0.423 3.577 7 O -0.516 6.516 8 N -0.370 5.370 9 C 0.162 3.838 10 H 0.062 0.938 11 C -0.598 4.598 12 H 0.109 0.891 13 C -0.191 4.191 14 N -0.509 5.509 15 Si 0.810 3.190 16 H -0.189 1.189 17 H -0.209 1.209 18 H -0.186 1.186 19 C 0.356 3.644 20 F -0.202 7.202 21 F -0.131 7.131 22 F -0.185 7.185 23 C -0.021 4.021 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.243 0.757 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.163 -13.648 3.097 17.296 hybrid contribution -0.026 0.946 -0.543 1.091 sum -10.189 -12.702 2.554 16.483 Atomic orbital electron populations 1.21759 0.94966 1.02206 1.01991 1.21384 0.96461 0.92706 1.03561 1.22912 0.93823 0.99102 0.96344 1.23168 0.97344 0.87711 0.92103 1.48753 1.30211 1.23541 1.39243 1.15629 0.81660 0.79800 0.80563 1.90866 1.29587 1.75976 1.55139 1.44932 1.31693 1.26096 1.34297 1.19214 0.92153 0.78260 0.94146 0.93830 1.21155 1.31130 1.15141 0.92421 0.89068 1.26040 0.94153 0.95083 1.03807 1.70534 1.26483 1.17301 1.36582 0.85158 0.78672 0.77818 0.77345 1.18933 1.20875 1.18647 1.23348 0.74518 0.88274 0.78232 1.93061 1.95083 1.92549 1.39520 1.93374 1.74509 1.53668 1.91520 1.92978 1.35871 1.95021 1.94612 1.23342 0.84473 0.96231 0.98037 0.91780 0.92871 0.92588 0.90372 0.90333 0.88208 0.88350 0.92000 0.75724 0.92071 0.90249 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.90 71.98 0.71 -0.77 16 2 C -0.10 -1.08 5.86 30.59 0.18 -0.90 16 3 C -0.10 -1.69 3.98 -10.55 -0.04 -1.73 16 4 C 0.12 2.79 8.20 83.18 0.68 3.47 16 5 N -0.68 -21.59 3.69 -877.02 -3.24 -24.83 16 6 C 0.72 31.89 8.33 179.05 1.49 33.38 16 7 O -0.63 -34.19 15.69 -3.99 -0.06 -34.25 16 8 N -0.72 -31.65 4.99 -461.40 -2.30 -33.95 16 9 C 0.27 14.30 2.21 44.25 0.10 14.40 16 10 H 0.04 2.67 7.58 -2.39 -0.02 2.65 16 11 C -0.56 -29.17 8.46 25.60 0.22 -28.96 16 12 H 0.09 4.34 7.74 -2.91 -0.02 4.32 16 13 C 0.01 0.76 5.20 84.66 0.44 1.20 16 14 N -0.88 -49.49 9.50 21.45 0.20 -49.28 16 15 Si 0.99 40.87 29.54 68.60 2.03 42.90 16 16 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 17 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 C 0.41 22.45 2.81 71.98 0.20 22.65 16 20 F -0.22 -12.12 15.67 44.97 0.70 -11.42 16 21 F -0.15 -8.71 12.91 44.97 0.58 -8.13 16 22 F -0.20 -10.35 16.94 44.97 0.76 -9.58 16 23 C 0.10 2.04 7.86 83.10 0.65 2.69 16 24 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.08 0.70 7.83 -2.39 -0.02 0.68 16 28 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.10 1.75 8.12 -2.38 -0.02 1.73 16 30 H 0.10 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.41 15.31 8.25 -92.71 -0.77 14.55 16 33 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.66 7.89 -2.39 -0.02 1.64 16 Total: -1.00 -70.70 305.72 3.66 -67.04 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.35 Total: 16.08 kcal Atomic # 6 Polarization: 40.79 SS G_CDS: 4.63 Total: 45.43 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -5.34 Total: -108.06 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.06 Total: -34.25 kcal Atomic # 9 Polarization: -31.18 SS G_CDS: 2.05 Total: -29.13 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -70.70 3.66 -67.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897711.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.402 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds