Wall clock time and date at job start Tue Mar 31 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46844 * 2 1 4 4 N 1.46497 * 115.54925 * 302.08620 * 3 2 1 5 5 C 1.34777 * 119.99952 * 294.40207 * 4 3 2 6 6 O 1.21586 * 120.00108 * 4.95206 * 5 4 3 7 7 N 1.34774 * 120.00344 * 184.95423 * 5 4 3 8 8 C 1.46499 * 120.00548 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46861 * 324.99736 * 8 7 5 10 10 C 1.50696 * 109.47113 * 205.00144 * 8 7 5 11 11 H 1.07998 * 120.00531 * 359.97438 * 10 8 7 12 12 C 1.37882 * 119.99877 * 180.02562 * 10 8 7 13 13 N 1.31510 * 119.99756 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00021 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47242 * 59.99721 * 14 12 10 16 16 H 1.48496 * 109.46986 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47087 * 299.99504 * 14 12 10 18 18 C 1.53000 * 109.47246 * 84.99786 * 8 7 5 19 19 F 1.39901 * 109.46853 * 60.00124 * 18 8 7 20 20 F 1.39895 * 109.47253 * 180.02562 * 18 8 7 21 21 F 1.39904 * 109.46853 * 300.00172 * 18 8 7 22 22 C 1.53002 * 117.49890 * 87.75754 * 3 2 1 23 23 C 1.53004 * 117.49644 * 156.41460 * 3 2 1 24 24 H 1.09006 * 109.46641 * 295.79007 * 1 2 3 25 25 H 1.08996 * 109.47483 * 55.79155 * 1 2 3 26 26 H 1.08999 * 109.46990 * 175.79349 * 1 2 3 27 27 H 1.08996 * 109.46799 * 240.00557 * 2 1 3 28 28 H 1.09003 * 109.47435 * 119.99689 * 2 1 3 29 29 H 0.96996 * 120.00008 * 114.40745 * 4 3 2 30 30 H 0.97008 * 119.99982 * 0.02562 * 7 5 4 31 31 H 0.97006 * 120.00293 * 180.02562 * 13 12 10 32 32 H 1.08999 * 117.49867 * 215.00238 * 22 3 2 33 33 H 1.09007 * 117.49844 * 0.02562 * 22 3 2 34 34 H 1.08995 * 117.49975 * 359.97433 * 23 3 2 35 35 H 1.09000 * 117.49550 * 144.97337 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5886 2.2723 -1.1198 5 6 1.9809 1.9804 -2.3758 6 8 2.6346 0.9781 -2.5911 7 7 1.6487 2.7996 -3.3931 8 6 2.0746 2.4821 -4.7584 9 1 3.0581 2.0129 -4.7323 10 6 2.1441 3.7496 -5.5705 11 1 1.8955 4.6969 -5.1154 12 6 2.5242 3.6998 -6.8950 13 7 2.8264 2.5462 -7.4493 14 14 2.6097 5.2709 -7.9018 15 1 3.5864 6.2028 -7.2832 16 1 3.0415 4.9490 -9.2857 17 1 1.2697 5.9098 -7.9370 18 6 1.0684 1.5221 -5.3963 19 9 -0.1939 2.1243 -5.4298 20 9 1.4754 1.2185 -6.6999 21 9 1.0039 0.3454 -4.6424 22 6 2.2254 2.1263 1.3561 23 6 3.4481 1.6940 0.5430 24 1 -0.3633 0.4471 0.9254 25 1 -0.3634 0.5777 -0.8498 26 1 -0.3633 -1.0249 -0.0754 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.0075 3.0317 -0.9574 30 1 1.1275 3.5995 -3.2214 31 1 3.0942 2.5111 -8.3811 32 1 2.0115 3.1935 1.4151 33 1 1.9844 1.5483 2.2484 34 1 4.0110 0.8319 0.9007 35 1 4.0388 2.4766 0.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932905281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:52 Heat of formation + Delta-G solvation = -146.153318 kcal Electronic energy + Delta-G solvation = -23495.810782 eV Core-core repulsion = 19501.427533 eV Total energy + Delta-G solvation = -3994.383249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.28873 -45.94046 -45.56109 -39.70991 -37.51530 -34.49814 -32.82470 -32.00450 -31.74428 -28.05708 -24.53627 -23.88306 -22.59113 -21.95628 -20.42722 -19.33821 -18.19274 -16.83780 -16.74792 -16.53820 -16.22099 -15.47926 -15.15864 -14.80147 -14.15343 -13.99920 -13.55351 -13.36526 -13.06665 -12.84344 -12.45916 -12.34027 -12.25313 -12.23248 -11.92908 -11.77177 -11.50813 -11.47604 -11.15309 -10.97000 -10.85479 -10.84703 -10.50786 -10.37723 -10.00143 -9.63665 -9.30939 -8.71129 -8.66614 -8.12671 -6.21443 -4.45345 3.10701 3.20812 3.25862 3.28266 3.73022 3.90073 4.20259 4.60363 4.66386 4.79000 4.89590 4.95640 5.05352 5.44223 5.51899 5.56639 5.67210 5.88556 5.90183 5.93264 5.97542 6.09543 6.14948 6.26651 6.34920 6.49498 6.87698 6.96844 7.26193 7.40419 7.64649 7.72690 8.51513 8.71784 9.18513 9.31445 10.70083 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.005658 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.627009 B = 4947.388743 C = 5497.895945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C 0.133 3.867 4 N -0.723 5.723 5 C 0.702 3.298 6 O -0.576 6.576 7 N -0.728 5.728 8 C 0.264 3.736 9 H 0.085 0.915 10 C -0.552 4.552 11 H 0.076 0.924 12 C 0.065 3.935 13 N -0.840 5.840 14 Si 0.915 3.085 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.273 1.273 18 C 0.416 3.584 19 F -0.211 7.211 20 F -0.138 7.138 21 F -0.216 7.216 22 C -0.177 4.177 23 C -0.176 4.176 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.393 0.607 30 H 0.393 0.607 31 H 0.268 0.732 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.156 0.342 13.076 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C 0.045 3.955 4 N -0.379 5.379 5 C 0.402 3.598 6 O -0.452 6.452 7 N -0.381 5.381 8 C 0.158 3.842 9 H 0.102 0.898 10 C -0.590 4.590 11 H 0.094 0.906 12 C -0.144 4.144 13 N -0.473 5.473 14 Si 0.742 3.258 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.199 1.199 18 C 0.359 3.641 19 F -0.193 7.193 20 F -0.119 7.119 21 F -0.198 7.198 22 C -0.215 4.215 23 C -0.214 4.214 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.227 0.773 30 H 0.226 0.774 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.471 -0.720 12.617 12.876 hybrid contribution -0.737 1.382 -0.567 1.666 sum -3.207 0.663 12.050 12.487 Atomic orbital electron populations 1.21637 0.95577 1.01384 1.01479 1.21290 0.95998 0.93083 1.03082 1.20270 0.98104 0.91716 0.85444 1.44437 1.55232 1.33646 1.04551 1.16036 0.80206 0.83462 0.80127 1.90896 1.44127 1.27102 1.83124 1.45280 1.58954 1.26794 1.07024 1.19570 0.92728 0.95160 0.76776 0.89772 1.20841 1.50544 0.91740 0.95828 0.90608 1.25077 0.94438 0.97311 0.97561 1.70397 1.39607 1.23390 1.13889 0.86274 0.78753 0.82036 0.78775 1.19831 1.20868 1.19861 1.23187 0.81642 0.80244 0.79015 1.92981 1.45620 1.83970 1.96706 1.93397 1.88980 1.93373 1.36162 1.93073 1.96704 1.52756 1.77287 1.23324 1.02987 1.01050 0.94089 1.23335 0.91495 1.03598 1.02995 0.93273 0.92506 0.92954 0.89561 0.91578 0.77308 0.77380 0.92080 0.88635 0.88106 0.88377 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.85 37.16 0.37 -1.42 16 2 C -0.10 -1.30 5.73 -26.73 -0.15 -1.45 16 3 C 0.13 1.79 1.72 -131.81 -0.23 1.56 16 4 N -0.72 -10.84 4.93 -52.41 -0.26 -11.10 16 5 C 0.70 14.08 7.99 -86.92 -0.69 13.38 16 6 O -0.58 -13.80 13.68 5.29 0.07 -13.73 16 7 N -0.73 -15.01 4.99 -59.81 -0.30 -15.31 16 8 C 0.26 6.63 2.21 -69.08 -0.15 6.47 16 9 H 0.08 2.38 7.58 -51.93 -0.39 1.99 16 10 C -0.55 -14.16 8.47 -34.44 -0.29 -14.45 16 11 H 0.08 1.83 7.74 -52.49 -0.41 1.42 16 12 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 13 N -0.84 -23.18 9.50 55.43 0.53 -22.65 16 14 Si 0.92 20.14 29.54 -169.99 -5.02 15.12 16 15 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 C 0.42 10.81 2.81 37.16 0.10 10.91 16 19 F -0.21 -5.27 16.94 2.25 0.04 -5.23 16 20 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 21 F -0.22 -5.61 15.68 2.25 0.04 -5.58 16 22 C -0.18 -1.77 10.16 -26.69 -0.27 -2.04 16 23 C -0.18 -2.19 10.18 -26.69 -0.27 -2.47 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.81 7.74 -51.93 -0.40 0.41 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 1.48 6.97 -51.93 -0.36 1.12 16 28 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 29 H 0.39 4.75 8.85 -40.82 -0.36 4.39 16 30 H 0.39 6.96 8.56 -40.82 -0.35 6.61 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -30.46 306.50 -6.31 -36.77 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.37 Total: 8.81 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -1.68 Total: 12.12 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.03 Total: -49.06 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.07 Total: -13.73 kcal Atomic # 9 Polarization: -14.75 SS G_CDS: 0.10 Total: -14.65 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.46 -6.31 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932905281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.382 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds