Wall clock time and date at job start Tue Mar 31 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46844 * 2 1 4 4 N 1.46497 * 115.54925 * 302.08620 * 3 2 1 5 5 C 1.34777 * 119.99952 * 294.40207 * 4 3 2 6 6 O 1.21586 * 120.00108 * 4.95206 * 5 4 3 7 7 N 1.34774 * 120.00344 * 184.95423 * 5 4 3 8 8 C 1.46499 * 120.00548 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.46861 * 324.99736 * 8 7 5 10 10 C 1.50696 * 109.47113 * 205.00144 * 8 7 5 11 11 H 1.07998 * 120.00531 * 359.97438 * 10 8 7 12 12 C 1.37882 * 119.99877 * 180.02562 * 10 8 7 13 13 N 1.31510 * 119.99756 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00021 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47242 * 59.99721 * 14 12 10 16 16 H 1.48496 * 109.46986 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47087 * 299.99504 * 14 12 10 18 18 C 1.53000 * 109.47246 * 84.99786 * 8 7 5 19 19 F 1.39901 * 109.46853 * 60.00124 * 18 8 7 20 20 F 1.39895 * 109.47253 * 180.02562 * 18 8 7 21 21 F 1.39904 * 109.46853 * 300.00172 * 18 8 7 22 22 C 1.53002 * 117.49890 * 87.75754 * 3 2 1 23 23 C 1.53004 * 117.49644 * 156.41460 * 3 2 1 24 24 H 1.09006 * 109.46641 * 295.79007 * 1 2 3 25 25 H 1.08996 * 109.47483 * 55.79155 * 1 2 3 26 26 H 1.08999 * 109.46990 * 175.79349 * 1 2 3 27 27 H 1.08996 * 109.46799 * 240.00557 * 2 1 3 28 28 H 1.09003 * 109.47435 * 119.99689 * 2 1 3 29 29 H 0.96996 * 120.00008 * 114.40745 * 4 3 2 30 30 H 0.97008 * 119.99982 * 0.02562 * 7 5 4 31 31 H 0.97006 * 120.00293 * 180.02562 * 13 12 10 32 32 H 1.08999 * 117.49867 * 215.00238 * 22 3 2 33 33 H 1.09007 * 117.49844 * 0.02562 * 22 3 2 34 34 H 1.08995 * 117.49975 * 359.97433 * 23 3 2 35 35 H 1.09000 * 117.49550 * 144.97337 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5886 2.2723 -1.1198 5 6 1.9809 1.9804 -2.3758 6 8 2.6346 0.9781 -2.5911 7 7 1.6487 2.7996 -3.3931 8 6 2.0746 2.4821 -4.7584 9 1 3.0581 2.0129 -4.7323 10 6 2.1441 3.7496 -5.5705 11 1 1.8955 4.6969 -5.1154 12 6 2.5242 3.6998 -6.8950 13 7 2.8264 2.5462 -7.4493 14 14 2.6097 5.2709 -7.9018 15 1 3.5864 6.2028 -7.2832 16 1 3.0415 4.9490 -9.2857 17 1 1.2697 5.9098 -7.9370 18 6 1.0684 1.5221 -5.3963 19 9 -0.1939 2.1243 -5.4298 20 9 1.4754 1.2185 -6.6999 21 9 1.0039 0.3454 -4.6424 22 6 2.2254 2.1263 1.3561 23 6 3.4481 1.6940 0.5430 24 1 -0.3633 0.4471 0.9254 25 1 -0.3634 0.5777 -0.8498 26 1 -0.3633 -1.0249 -0.0754 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.0075 3.0317 -0.9574 30 1 1.1275 3.5995 -3.2214 31 1 3.0942 2.5111 -8.3811 32 1 2.0115 3.1935 1.4151 33 1 1.9844 1.5483 2.2484 34 1 4.0110 0.8319 0.9007 35 1 4.0388 2.4766 0.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932905281.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:52 Heat of formation + Delta-G solvation = -166.618452 kcal Electronic energy + Delta-G solvation = -23496.698217 eV Core-core repulsion = 19501.427533 eV Total energy + Delta-G solvation = -3995.270684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.39762 -48.03093 -47.71293 -41.13481 -38.78845 -36.34698 -34.58479 -33.53125 -32.76244 -29.92405 -26.57819 -24.90990 -24.00098 -23.25146 -22.09357 -20.68273 -19.82420 -18.83075 -18.75806 -18.51765 -17.82164 -16.99520 -16.72344 -16.32238 -15.73093 -15.33109 -15.08146 -14.95288 -14.66597 -14.60861 -14.44766 -14.28153 -14.17253 -14.01211 -13.85759 -13.21252 -13.04497 -12.77056 -12.61116 -12.46739 -12.36043 -12.21263 -11.99606 -11.62234 -11.58840 -11.32140 -10.70068 -10.66679 -10.18089 -9.69505 -8.20359 -6.51568 1.46541 1.49585 1.57441 1.71445 2.18415 2.37569 2.57916 2.86601 2.95417 3.28562 3.70450 3.80745 3.89291 3.99687 4.05076 4.21570 4.43105 4.55549 4.64321 4.78903 4.87512 4.94914 5.03901 5.12787 5.25521 5.31382 5.39259 5.46126 5.55687 5.66474 5.77245 6.15997 6.53591 7.17773 7.25250 7.73559 8.72276 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026147 B = 0.005658 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.627009 B = 4947.388743 C = 5497.895945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 C 0.098 3.902 4 N -0.702 5.702 5 C 0.698 3.302 6 O -0.620 6.620 7 N -0.723 5.723 8 C 0.273 3.727 9 H 0.044 0.956 10 C -0.562 4.562 11 H 0.092 0.908 12 C 0.014 3.986 13 N -0.875 5.875 14 Si 0.985 3.015 15 H -0.262 1.262 16 H -0.284 1.284 17 H -0.265 1.265 18 C 0.413 3.587 19 F -0.204 7.204 20 F -0.151 7.151 21 F -0.219 7.219 22 C -0.130 4.130 23 C -0.191 4.191 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.093 0.907 29 H 0.410 0.590 30 H 0.408 0.592 31 H 0.268 0.732 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.104 0.896 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.018 2.163 15.082 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.133 4.133 3 C 0.010 3.990 4 N -0.358 5.358 5 C 0.398 3.602 6 O -0.499 6.499 7 N -0.377 5.377 8 C 0.165 3.835 9 H 0.062 0.938 10 C -0.599 4.599 11 H 0.110 0.890 12 C -0.191 4.191 13 N -0.509 5.509 14 Si 0.808 3.192 15 H -0.187 1.187 16 H -0.210 1.210 17 H -0.190 1.190 18 C 0.356 3.644 19 F -0.186 7.186 20 F -0.133 7.133 21 F -0.201 7.201 22 C -0.168 4.168 23 C -0.230 4.230 24 H 0.097 0.903 25 H 0.050 0.950 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.111 0.889 29 H 0.246 0.754 30 H 0.244 0.756 31 H 0.078 0.922 32 H 0.131 0.869 33 H 0.147 0.853 34 H 0.123 0.877 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.369 1.139 14.694 15.118 hybrid contribution -0.466 0.753 -1.112 1.422 sum -3.835 1.892 13.581 14.238 Atomic orbital electron populations 1.21601 0.94684 1.01441 1.01823 1.21246 0.96765 0.93158 1.02101 1.20598 0.99494 0.92119 0.86785 1.44233 1.54382 1.34012 1.03145 1.16241 0.79846 0.82753 0.81360 1.90870 1.46081 1.28931 1.84055 1.45017 1.59318 1.27603 1.05753 1.19123 0.90748 0.94663 0.78956 0.93827 1.21197 1.50296 0.92270 0.96147 0.89017 1.26019 0.93807 1.00481 0.98795 1.70537 1.40586 1.25686 1.14130 0.85195 0.79148 0.78002 0.76873 1.18702 1.20986 1.18999 1.23366 0.82116 0.80368 0.78545 1.92978 1.45139 1.83804 1.96661 1.93369 1.89198 1.93512 1.37198 1.93064 1.96746 1.53033 1.77259 1.23459 0.98734 1.02105 0.92475 1.23377 0.91651 1.03783 1.04183 0.90349 0.94979 0.92713 0.94235 0.88872 0.75352 0.75564 0.92164 0.86891 0.85251 0.87742 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.85 71.98 0.71 -2.51 16 2 C -0.09 -2.46 5.73 30.60 0.18 -2.29 16 3 C 0.10 2.46 1.72 3.61 0.01 2.47 16 4 N -0.70 -20.34 4.93 -438.00 -2.16 -22.50 16 5 C 0.70 28.38 7.99 179.05 1.43 29.81 16 6 O -0.62 -30.90 13.68 -3.99 -0.05 -30.96 16 7 N -0.72 -29.96 4.99 -461.42 -2.30 -32.27 16 8 C 0.27 14.03 2.21 44.24 0.10 14.13 16 9 H 0.04 2.60 7.58 -2.39 -0.02 2.59 16 10 C -0.56 -28.74 8.47 25.60 0.22 -28.52 16 11 H 0.09 4.29 7.74 -2.91 -0.02 4.26 16 12 C 0.01 0.74 5.20 84.66 0.44 1.18 16 13 N -0.88 -49.22 9.50 21.45 0.20 -49.02 16 14 Si 0.98 40.73 29.54 68.60 2.03 42.75 16 15 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 16 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 17 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 18 C 0.41 21.94 2.81 71.98 0.20 22.14 16 19 F -0.20 -10.21 16.94 44.97 0.76 -9.44 16 20 F -0.15 -8.74 12.91 44.97 0.58 -8.16 16 21 F -0.22 -11.73 15.68 44.97 0.70 -11.03 16 22 C -0.13 -2.08 10.16 30.62 0.31 -1.77 16 23 C -0.19 -4.47 10.18 30.62 0.31 -4.16 16 24 H 0.08 1.35 8.14 -2.38 -0.02 1.34 16 25 H 0.03 0.89 7.74 -2.39 -0.02 0.87 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.40 6.97 -2.39 -0.02 1.38 16 28 H 0.09 1.88 8.11 -2.39 -0.02 1.86 16 29 H 0.41 9.03 8.85 -92.71 -0.82 8.21 16 30 H 0.41 14.08 8.56 -92.70 -0.79 13.29 16 31 H 0.27 14.33 8.31 -92.70 -0.77 13.56 16 32 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -68.08 306.50 3.19 -64.89 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -0.48 Total: 25.24 kcal Atomic # 6 Polarization: 26.58 SS G_CDS: 3.90 Total: 30.48 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.26 Total: -103.78 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.05 Total: -30.96 kcal Atomic # 9 Polarization: -30.67 SS G_CDS: 2.05 Total: -28.63 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.75 kcal Total: -68.08 3.19 -64.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932905281.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.729 kcal (2) G-P(sol) polarization free energy of solvation -68.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds