Wall clock time and date at job start Tue Mar 31 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 N 1.46499 * 115.54845 * 303.42671 * 3 2 1 5 5 C 1.34779 * 120.00434 * 294.31745 * 4 3 2 6 6 O 1.21591 * 119.99438 * 354.49454 * 5 4 3 7 7 N 1.34772 * 120.00301 * 174.49532 * 5 4 3 8 8 C 1.46498 * 119.99954 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.47072 * 34.99818 * 8 7 5 10 10 C 1.50703 * 109.47203 * 154.99389 * 8 7 5 11 11 H 1.08001 * 119.99579 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99883 * 179.97438 * 10 8 7 13 13 N 1.31508 * 120.00230 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99657 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47337 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47281 * 120.00256 * 14 12 10 17 17 H 1.48506 * 109.46724 * 240.00217 * 14 12 10 18 18 C 1.52995 * 109.47278 * 274.99568 * 8 7 5 19 19 F 1.39903 * 109.46731 * 60.00107 * 18 8 7 20 20 F 1.39899 * 109.47214 * 180.02562 * 18 8 7 21 21 F 1.39894 * 109.47399 * 300.00355 * 18 8 7 22 22 C 1.52995 * 117.49655 * 89.09656 * 3 2 1 23 23 C 1.52994 * 117.49963 * 157.75562 * 3 2 1 24 24 H 1.09005 * 109.47454 * 55.48636 * 1 2 3 25 25 H 1.09003 * 109.47327 * 175.48202 * 1 2 3 26 26 H 1.08998 * 109.47224 * 295.48788 * 1 2 3 27 27 H 1.09004 * 109.47066 * 240.00259 * 2 1 3 28 28 H 1.09002 * 109.47311 * 120.00412 * 2 1 3 29 29 H 0.97000 * 120.00146 * 114.32505 * 4 3 2 30 30 H 0.97000 * 119.99997 * 359.97438 * 7 5 4 31 31 H 0.97004 * 120.00265 * 179.97438 * 13 12 10 32 32 H 1.09003 * 117.49965 * 215.00491 * 22 3 2 33 33 H 1.08998 * 117.50202 * 0.02604 * 22 3 2 34 34 H 1.09004 * 117.49960 * 359.97438 * 23 3 2 35 35 H 1.09001 * 117.50049 * 144.97833 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5641 2.2809 -1.1031 5 6 1.9299 1.9999 -2.3695 6 8 2.7333 1.1137 -2.5878 7 7 1.4052 2.7011 -3.3939 8 6 1.8024 2.3953 -4.7704 9 1 1.9704 1.3229 -4.8704 10 6 0.7090 2.8226 -5.7155 11 1 -0.1914 3.2769 -5.3293 12 6 0.8588 2.6344 -7.0731 13 7 1.9555 2.0816 -7.5434 14 14 -0.4961 3.1647 -8.2446 15 1 -1.6173 3.7548 -7.4701 16 1 0.0369 4.1755 -9.1930 17 1 -0.9854 1.9848 -9.0020 18 6 3.0913 3.1471 -5.1083 19 9 4.1062 2.7503 -4.2310 20 9 3.4703 2.8555 -6.4231 21 9 2.8757 4.5234 -4.9800 22 6 2.2552 2.1156 1.3570 23 6 3.4597 1.6898 0.5137 24 1 -0.3634 0.5823 -0.8468 25 1 -0.3634 -1.0245 -0.0810 26 1 -0.3633 0.4422 0.9276 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.9858 3.0383 -0.9221 30 1 0.7640 3.4078 -3.2198 31 1 2.0608 1.9489 -8.4985 32 1 2.0429 3.1823 1.4290 33 1 2.0340 1.5307 2.2497 34 1 4.0303 0.8248 0.8521 35 1 4.0399 2.4760 0.0308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932905282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:55 Heat of formation + Delta-G solvation = -146.163564 kcal Electronic energy + Delta-G solvation = -23447.967293 eV Core-core repulsion = 19453.583599 eV Total energy + Delta-G solvation = -3994.383694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.29222 -45.94454 -45.56265 -39.70662 -37.51276 -34.49433 -32.82259 -32.00469 -31.78270 -28.05649 -24.53907 -23.90623 -22.57427 -21.96028 -20.43395 -19.32746 -18.19150 -16.83863 -16.75189 -16.53345 -16.22475 -15.55009 -15.06102 -14.84357 -14.30568 -13.72205 -13.69711 -13.31689 -13.12300 -12.85345 -12.46463 -12.34436 -12.27081 -12.24269 -11.93516 -11.77508 -11.53026 -11.47141 -11.15237 -11.01282 -10.86024 -10.81537 -10.53190 -10.37357 -9.94508 -9.61514 -9.35613 -8.71821 -8.66338 -8.12582 -6.21919 -4.45468 3.10861 3.18635 3.26401 3.30193 3.72940 3.91966 4.20173 4.59320 4.66847 4.79932 4.90156 4.95587 5.03745 5.40745 5.50303 5.57517 5.64395 5.86899 5.91577 5.93162 5.98736 6.07182 6.17794 6.26551 6.30235 6.42150 6.87537 6.96847 7.26104 7.40749 7.64601 7.72580 8.52053 8.71936 9.18547 9.31575 10.69742 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.005716 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.812844 B = 4897.304823 C = 5498.683686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C 0.132 3.868 4 N -0.723 5.723 5 C 0.701 3.299 6 O -0.576 6.576 7 N -0.728 5.728 8 C 0.263 3.737 9 H 0.085 0.915 10 C -0.551 4.551 11 H 0.077 0.923 12 C 0.064 3.936 13 N -0.840 5.840 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.415 3.585 19 F -0.216 7.216 20 F -0.138 7.138 21 F -0.211 7.211 22 C -0.177 4.177 23 C -0.173 4.173 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.393 0.607 30 H 0.393 0.607 31 H 0.267 0.733 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.473 0.559 13.240 13.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C 0.044 3.956 4 N -0.379 5.379 5 C 0.401 3.599 6 O -0.452 6.452 7 N -0.380 5.380 8 C 0.157 3.843 9 H 0.102 0.898 10 C -0.588 4.588 11 H 0.095 0.905 12 C -0.144 4.144 13 N -0.473 5.473 14 Si 0.742 3.258 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.359 3.641 19 F -0.198 7.198 20 F -0.119 7.119 21 F -0.193 7.193 22 C -0.215 4.215 23 C -0.211 4.211 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.227 0.773 30 H 0.226 0.774 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.601 -0.345 12.790 12.894 hybrid contribution -0.857 1.275 -0.575 1.640 sum -2.458 0.930 12.215 12.494 Atomic orbital electron populations 1.21652 0.95462 1.01423 1.01657 1.21263 0.96054 0.93092 1.02940 1.20252 0.97897 0.91505 0.85992 1.44444 1.55634 1.33499 1.04293 1.16039 0.81128 0.82497 0.80193 1.90906 1.36596 1.34165 1.83573 1.45277 1.47576 1.39262 1.05934 1.19583 0.89499 0.97601 0.77616 0.89761 1.20920 1.02646 1.44553 0.90668 0.90490 1.25081 0.96193 0.94742 0.98416 1.70418 1.23621 1.38808 1.14443 0.86163 0.81016 0.78384 0.80272 1.19451 1.20584 1.20571 1.23196 0.87861 0.77383 0.75673 1.93074 1.65191 1.90710 1.70858 1.93399 1.92223 1.92425 1.33847 1.92978 1.95177 1.35188 1.95954 1.23325 1.03293 1.01108 0.93775 1.23305 0.91550 1.03611 1.02643 0.92378 0.92920 0.93172 0.90036 0.91409 0.77314 0.77372 0.92198 0.88669 0.88110 0.88418 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.84 37.15 0.37 -1.33 16 2 C -0.09 -1.24 5.76 -26.74 -0.15 -1.39 16 3 C 0.13 1.77 1.65 -131.83 -0.22 1.56 16 4 N -0.72 -10.84 4.87 -52.42 -0.26 -11.10 16 5 C 0.70 14.09 7.95 -86.92 -0.69 13.40 16 6 O -0.58 -13.85 14.08 5.29 0.07 -13.77 16 7 N -0.73 -15.02 4.99 -59.81 -0.30 -15.31 16 8 C 0.26 6.61 2.21 -69.08 -0.15 6.46 16 9 H 0.08 2.38 7.58 -51.93 -0.39 1.99 16 10 C -0.55 -14.10 8.47 -34.44 -0.29 -14.39 16 11 H 0.08 1.86 7.74 -52.49 -0.41 1.46 16 12 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 13 N -0.84 -23.18 9.50 55.43 0.53 -22.65 16 14 Si 0.92 20.14 29.54 -169.99 -5.02 15.11 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 C 0.42 10.83 2.81 37.15 0.10 10.93 16 19 F -0.22 -5.65 15.67 2.25 0.04 -5.62 16 20 F -0.14 -3.87 12.91 2.25 0.03 -3.84 16 21 F -0.21 -5.28 16.94 2.25 0.04 -5.25 16 22 C -0.18 -1.80 10.16 -26.70 -0.27 -2.07 16 23 C -0.17 -2.23 10.18 -26.70 -0.27 -2.50 16 24 H 0.06 0.77 7.70 -51.93 -0.40 0.37 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 1.33 7.35 -51.93 -0.38 0.95 16 28 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.39 4.75 8.85 -40.82 -0.36 4.39 16 30 H 0.39 6.96 8.56 -40.82 -0.35 6.62 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 307.07 15.07 4.63 4.63 Total: -1.00 -30.60 307.07 -6.30 -36.90 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.38 Total: 8.65 kcal Atomic # 6 Polarization: 13.92 SS G_CDS: -1.67 Total: 12.25 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.03 Total: -49.06 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.07 Total: -13.77 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.10 Total: -14.70 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.60 -6.30 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932905282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.262 kcal (2) G-P(sol) polarization free energy of solvation -30.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds