Wall clock time and date at job start Tue Mar 31 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 N 1.46499 * 115.54845 * 303.42671 * 3 2 1 5 5 C 1.34779 * 120.00434 * 294.31745 * 4 3 2 6 6 O 1.21591 * 119.99438 * 354.49454 * 5 4 3 7 7 N 1.34772 * 120.00301 * 174.49532 * 5 4 3 8 8 C 1.46498 * 119.99954 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.47072 * 34.99818 * 8 7 5 10 10 C 1.50703 * 109.47203 * 154.99389 * 8 7 5 11 11 H 1.08001 * 119.99579 * 0.02562 * 10 8 7 12 12 C 1.37879 * 119.99883 * 179.97438 * 10 8 7 13 13 N 1.31508 * 120.00230 * 0.02562 * 12 10 8 14 14 Si 1.86802 * 119.99657 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47337 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47281 * 120.00256 * 14 12 10 17 17 H 1.48506 * 109.46724 * 240.00217 * 14 12 10 18 18 C 1.52995 * 109.47278 * 274.99568 * 8 7 5 19 19 F 1.39903 * 109.46731 * 60.00107 * 18 8 7 20 20 F 1.39899 * 109.47214 * 180.02562 * 18 8 7 21 21 F 1.39894 * 109.47399 * 300.00355 * 18 8 7 22 22 C 1.52995 * 117.49655 * 89.09656 * 3 2 1 23 23 C 1.52994 * 117.49963 * 157.75562 * 3 2 1 24 24 H 1.09005 * 109.47454 * 55.48636 * 1 2 3 25 25 H 1.09003 * 109.47327 * 175.48202 * 1 2 3 26 26 H 1.08998 * 109.47224 * 295.48788 * 1 2 3 27 27 H 1.09004 * 109.47066 * 240.00259 * 2 1 3 28 28 H 1.09002 * 109.47311 * 120.00412 * 2 1 3 29 29 H 0.97000 * 120.00146 * 114.32505 * 4 3 2 30 30 H 0.97000 * 119.99997 * 359.97438 * 7 5 4 31 31 H 0.97004 * 120.00265 * 179.97438 * 13 12 10 32 32 H 1.09003 * 117.49965 * 215.00491 * 22 3 2 33 33 H 1.08998 * 117.50202 * 0.02604 * 22 3 2 34 34 H 1.09004 * 117.49960 * 359.97438 * 23 3 2 35 35 H 1.09001 * 117.50049 * 144.97833 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5641 2.2809 -1.1031 5 6 1.9299 1.9999 -2.3695 6 8 2.7333 1.1137 -2.5878 7 7 1.4052 2.7011 -3.3939 8 6 1.8024 2.3953 -4.7704 9 1 1.9704 1.3229 -4.8704 10 6 0.7090 2.8226 -5.7155 11 1 -0.1914 3.2769 -5.3293 12 6 0.8588 2.6344 -7.0731 13 7 1.9555 2.0816 -7.5434 14 14 -0.4961 3.1647 -8.2446 15 1 -1.6173 3.7548 -7.4701 16 1 0.0369 4.1755 -9.1930 17 1 -0.9854 1.9848 -9.0020 18 6 3.0913 3.1471 -5.1083 19 9 4.1062 2.7503 -4.2310 20 9 3.4703 2.8555 -6.4231 21 9 2.8757 4.5234 -4.9800 22 6 2.2552 2.1156 1.3570 23 6 3.4597 1.6898 0.5137 24 1 -0.3634 0.5823 -0.8468 25 1 -0.3634 -1.0245 -0.0810 26 1 -0.3633 0.4422 0.9276 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.9858 3.0383 -0.9221 30 1 0.7640 3.4078 -3.2198 31 1 2.0608 1.9489 -8.4985 32 1 2.0429 3.1823 1.4290 33 1 2.0340 1.5307 2.2497 34 1 4.0303 0.8248 0.8521 35 1 4.0399 2.4760 0.0308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932905282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:55 Heat of formation + Delta-G solvation = -166.726775 kcal Electronic energy + Delta-G solvation = -23448.858981 eV Core-core repulsion = 19453.583599 eV Total energy + Delta-G solvation = -3995.275381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.40470 -48.03899 -47.71760 -41.13680 -38.79295 -36.34805 -34.58592 -33.53500 -32.76813 -29.92630 -26.58382 -24.90118 -24.00596 -23.25836 -22.10409 -20.67100 -19.82790 -18.83658 -18.76596 -18.51569 -17.83470 -17.03271 -16.69986 -16.30793 -15.81523 -15.26995 -15.05318 -14.92662 -14.73058 -14.56009 -14.45571 -14.29307 -14.21574 -14.01779 -13.86859 -13.20756 -13.05704 -12.74484 -12.65799 -12.45958 -12.36866 -12.19836 -11.98437 -11.64436 -11.53154 -11.28129 -10.75209 -10.69308 -10.18123 -9.69649 -8.20857 -6.51673 1.46212 1.47194 1.59627 1.71612 2.17655 2.37091 2.57758 2.86499 2.95090 3.28342 3.70495 3.80119 3.89273 3.98737 4.03648 4.20871 4.43593 4.55920 4.64606 4.78480 4.88094 4.95442 5.04182 5.13585 5.24679 5.30640 5.39876 5.45895 5.55139 5.66501 5.76890 6.15751 6.54122 7.17722 7.25009 7.73224 8.72279 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.005716 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.812844 B = 4897.304823 C = 5498.683686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 C 0.099 3.901 4 N -0.702 5.702 5 C 0.698 3.302 6 O -0.620 6.620 7 N -0.722 5.722 8 C 0.273 3.727 9 H 0.044 0.956 10 C -0.560 4.560 11 H 0.092 0.908 12 C 0.014 3.986 13 N -0.876 5.876 14 Si 0.985 3.015 15 H -0.255 1.255 16 H -0.281 1.281 17 H -0.278 1.278 18 C 0.412 3.588 19 F -0.219 7.219 20 F -0.151 7.151 21 F -0.204 7.204 22 C -0.130 4.130 23 C -0.193 4.193 24 H 0.035 0.965 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.094 0.906 29 H 0.410 0.590 30 H 0.409 0.591 31 H 0.268 0.732 32 H 0.111 0.889 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.321 1.629 15.147 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C 0.012 3.988 4 N -0.358 5.358 5 C 0.398 3.602 6 O -0.500 6.500 7 N -0.377 5.377 8 C 0.165 3.835 9 H 0.062 0.938 10 C -0.596 4.596 11 H 0.110 0.890 12 C -0.191 4.191 13 N -0.510 5.510 14 Si 0.808 3.192 15 H -0.178 1.178 16 H -0.207 1.207 17 H -0.203 1.203 18 C 0.356 3.644 19 F -0.201 7.201 20 F -0.133 7.133 21 F -0.186 7.186 22 C -0.168 4.168 23 C -0.231 4.231 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.247 0.753 30 H 0.245 0.755 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.485 0.761 14.768 15.192 hybrid contribution -0.222 0.921 -1.088 1.442 sum -3.707 1.682 13.680 14.273 Atomic orbital electron populations 1.21614 0.94334 1.01628 1.02065 1.21234 0.97010 0.92786 1.02089 1.20613 0.98788 0.92116 0.87305 1.44244 1.54859 1.33861 1.02837 1.16235 0.80683 0.81809 0.81449 1.90877 1.38599 1.36030 1.84497 1.45012 1.48044 1.39956 1.04651 1.19138 0.89249 0.95183 0.79979 0.93808 1.21256 1.03044 1.44363 0.90977 0.88987 1.26019 0.98373 0.94546 1.00206 1.70548 1.25698 1.39972 1.14785 0.85092 0.78343 0.77865 0.77886 1.17824 1.20669 1.20314 1.23381 0.88154 0.77796 0.75096 1.93064 1.65431 1.90800 1.70852 1.93372 1.92398 1.92591 1.34899 1.92976 1.95134 1.34576 1.95886 1.23458 0.98744 1.02175 0.92380 1.23329 0.91854 1.03683 1.04279 0.94528 0.92495 0.90454 0.94411 0.88754 0.75339 0.75549 0.92182 0.87063 0.85058 0.87768 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.84 71.98 0.71 -2.30 16 2 C -0.09 -2.32 5.76 30.59 0.18 -2.14 16 3 C 0.10 2.51 1.65 3.60 0.01 2.52 16 4 N -0.70 -20.36 4.87 -438.03 -2.13 -22.49 16 5 C 0.70 28.40 7.95 179.06 1.42 29.82 16 6 O -0.62 -31.01 14.08 -4.00 -0.06 -31.07 16 7 N -0.72 -29.94 4.99 -461.41 -2.30 -32.25 16 8 C 0.27 13.99 2.21 44.24 0.10 14.09 16 9 H 0.04 2.61 7.58 -2.38 -0.02 2.60 16 10 C -0.56 -28.56 8.47 25.60 0.22 -28.35 16 11 H 0.09 4.32 7.74 -2.91 -0.02 4.29 16 12 C 0.01 0.71 5.20 84.66 0.44 1.15 16 13 N -0.88 -49.23 9.50 21.45 0.20 -49.03 16 14 Si 0.98 40.76 29.54 68.60 2.03 42.78 16 15 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 16 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 17 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 18 C 0.41 21.93 2.81 71.98 0.20 22.13 16 19 F -0.22 -11.78 15.67 44.97 0.70 -11.07 16 20 F -0.15 -8.73 12.91 44.97 0.58 -8.15 16 21 F -0.20 -10.19 16.94 44.97 0.76 -9.42 16 22 C -0.13 -2.13 10.16 30.62 0.31 -1.82 16 23 C -0.19 -4.74 10.18 30.61 0.31 -4.43 16 24 H 0.04 0.93 7.70 -2.38 -0.02 0.91 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.04 1.27 7.35 -2.38 -0.02 1.25 16 28 H 0.09 1.81 8.10 -2.39 -0.02 1.80 16 29 H 0.41 9.03 8.85 -92.71 -0.82 8.21 16 30 H 0.41 14.09 8.56 -92.71 -0.79 13.29 16 31 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 35 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -68.24 307.07 3.20 -65.04 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -0.48 Total: 24.98 kcal Atomic # 6 Polarization: 26.78 SS G_CDS: 3.89 Total: 30.67 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -4.23 Total: -103.76 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.06 Total: -31.07 kcal Atomic # 9 Polarization: -30.70 SS G_CDS: 2.05 Total: -28.65 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -68.24 3.20 -65.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932905282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.683 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds