Wall clock time and date at job start Tue Mar 31 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 112.84973 * 2 1 4 4 C 1.34774 * 120.00320 * 48.79677 * 3 2 1 5 5 O 1.21585 * 119.99765 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00239 * 180.02562 * 4 3 2 7 7 C 1.46495 * 119.99734 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47625 * 325.00273 * 7 6 4 9 9 C 1.50702 * 109.47094 * 204.99991 * 7 6 4 10 10 H 1.08002 * 119.99844 * 0.02562 * 9 7 6 11 11 C 1.37877 * 120.00143 * 180.02562 * 9 7 6 12 12 N 1.31508 * 120.00213 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00041 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46897 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47458 * 119.99501 * 13 11 9 16 16 H 1.48499 * 109.47323 * 239.99879 * 13 11 9 17 17 C 1.53001 * 109.46956 * 85.00469 * 7 6 4 18 18 F 1.39895 * 109.47339 * 59.99510 * 17 7 6 19 19 F 1.39905 * 109.46913 * 179.97438 * 17 7 6 20 20 F 1.39904 * 109.46968 * 299.99520 * 17 7 6 21 21 C 1.53782 * 113.61779 * 228.79862 * 2 1 3 22 22 C 1.53781 * 87.08260 * 219.93457 * 21 2 1 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 2 24 24 H 1.09005 * 109.46921 * 191.20148 * 1 2 3 25 25 H 1.08996 * 109.47532 * 311.19881 * 1 2 3 26 26 H 1.08997 * 109.47245 * 71.20306 * 1 2 3 27 27 H 0.97003 * 119.99931 * 228.80854 * 3 2 1 28 28 H 0.96996 * 119.99708 * 0.02562 * 6 4 3 29 29 H 0.96994 * 120.00326 * 179.97438 * 12 11 9 30 30 H 1.09001 * 113.61250 * 105.38275 * 21 2 1 31 31 H 1.08997 * 113.61225 * 334.48116 * 21 2 1 32 32 H 1.09002 * 113.61445 * 139.98212 * 22 21 2 33 33 H 1.09002 * 113.61408 * 270.79943 * 22 21 2 34 34 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 35 35 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 1.6521 2.2696 0.8781 5 8 0.7771 1.9786 1.6707 6 7 2.1751 3.5118 0.8778 7 6 1.6897 4.5111 1.8327 8 1 0.6222 4.3668 1.9987 9 6 1.9299 5.8924 1.2799 10 1 2.3970 6.0136 0.3137 11 6 1.5534 7.0013 2.0077 12 7 0.9842 6.8537 3.1840 13 14 1.8505 8.7134 1.3222 14 1 2.4999 8.6076 -0.0093 15 1 0.5537 9.4240 1.1858 16 1 2.7347 9.4695 2.2449 17 6 2.4376 4.3552 3.1583 18 9 3.8078 4.5405 2.9453 19 9 1.9745 5.3100 4.0701 20 9 2.2146 3.0729 3.6715 21 6 2.1461 -0.9281 -1.0601 22 6 3.1937 -1.3119 -0.0018 23 6 2.1499 -0.9283 1.0604 24 1 -0.3633 -1.0081 0.1996 25 1 -0.3634 0.6769 0.7732 26 1 -0.3633 0.3311 -0.9728 27 1 2.7970 1.5821 -0.6322 28 1 2.8728 3.7440 0.2452 29 1 0.7197 7.6338 3.6961 30 1 2.5637 -0.3972 -1.9156 31 1 1.4952 -1.7532 -1.3494 32 1 3.4469 -2.3721 -0.0024 33 1 4.0725 -0.6669 -0.0034 34 1 1.5001 -1.7534 1.3519 35 1 2.5707 -0.3975 1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:57 Heat of formation + Delta-G solvation = -145.500531 kcal Electronic energy + Delta-G solvation = -23575.952559 eV Core-core repulsion = 19581.597616 eV Total energy + Delta-G solvation = -3994.354942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.28975 -45.94241 -45.56081 -40.19064 -38.07598 -34.58243 -32.94149 -32.25745 -29.36585 -27.86250 -25.71368 -24.53785 -22.98508 -21.70209 -20.27951 -18.98599 -18.25837 -16.80517 -16.75691 -16.54345 -16.03730 -15.50047 -14.87838 -14.85512 -14.30619 -14.02771 -13.55980 -13.23603 -13.07076 -12.85472 -12.46387 -12.40218 -12.34208 -12.24508 -11.97716 -11.90756 -11.77125 -11.25492 -11.15507 -10.92267 -10.84990 -10.74539 -10.50149 -10.37631 -10.24259 -9.61751 -9.19150 -8.71460 -8.64772 -8.11881 -6.21949 -4.45473 3.16203 3.18911 3.26667 3.30643 3.80012 4.20296 4.52008 4.58536 4.65746 4.78575 4.91385 4.95636 4.99100 5.56241 5.66377 5.69919 5.80837 5.81259 5.89977 5.93169 6.02841 6.15423 6.20236 6.26455 6.31188 6.67570 6.88515 7.04477 7.29150 7.41185 7.64627 7.73460 8.52097 8.71767 9.18392 9.31001 10.69719 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.005442 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.382726 B = 5143.807573 C = 5487.453988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 N -0.733 5.733 4 C 0.701 3.299 5 O -0.577 6.577 6 N -0.728 5.728 7 C 0.263 3.737 8 H 0.085 0.915 9 C -0.551 4.551 10 H 0.077 0.923 11 C 0.064 3.936 12 N -0.840 5.840 13 Si 0.915 3.085 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.416 3.584 18 F -0.211 7.211 19 F -0.138 7.138 20 F -0.216 7.216 21 C -0.140 4.140 22 C -0.141 4.141 23 C -0.146 4.146 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.049 0.951 27 H 0.392 0.608 28 H 0.393 0.607 29 H 0.267 0.733 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.267 -10.965 -7.343 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.087 3.913 3 N -0.389 5.389 4 C 0.402 3.598 5 O -0.455 6.455 6 N -0.380 5.380 7 C 0.157 3.843 8 H 0.103 0.897 9 C -0.588 4.588 10 H 0.095 0.905 11 C -0.144 4.144 12 N -0.473 5.473 13 Si 0.742 3.258 14 H -0.195 1.195 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.359 3.641 18 F -0.193 7.193 19 F -0.119 7.119 20 F -0.198 7.198 21 C -0.178 4.178 22 C -0.179 4.179 23 C -0.185 4.185 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.068 0.932 27 H 0.226 0.774 28 H 0.226 0.774 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.354 -11.102 -6.382 13.020 hybrid contribution 1.086 1.068 -0.579 1.629 sum 3.440 -10.034 -6.962 12.687 Atomic orbital electron populations 1.22175 0.93615 1.02821 1.03483 1.20954 0.93488 0.80787 0.96067 1.44807 1.43674 1.10901 1.39543 1.16045 0.82054 0.80608 0.81118 1.90827 1.33536 1.79369 1.41734 1.45297 1.42878 1.10223 1.39620 1.19580 0.95759 0.87669 0.81328 0.89744 1.20921 1.44173 0.87826 1.05885 0.90502 1.25079 0.94564 1.00346 0.94436 1.70413 1.36158 1.30439 1.10279 0.86164 0.78100 0.82490 0.79080 1.19456 1.20572 1.20593 1.23189 0.77391 0.72473 0.91026 1.92978 1.35727 1.95190 1.95396 1.93401 1.87390 1.61621 1.69496 1.93073 1.94530 1.42639 1.89581 1.23276 0.98481 0.99211 0.96798 1.22841 0.97232 1.01106 0.96695 1.23397 0.98055 0.99266 0.97786 0.92451 0.88375 0.93152 0.77438 0.77362 0.92199 0.91205 0.88950 0.91565 0.90306 0.89672 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.08 37.16 0.34 -1.98 16 2 C 0.17 2.34 1.18 -130.91 -0.15 2.19 16 3 N -0.73 -10.96 5.22 -51.57 -0.27 -11.23 16 4 C 0.70 13.97 7.86 -86.92 -0.68 13.29 16 5 O -0.58 -13.56 12.42 5.29 0.07 -13.50 16 6 N -0.73 -14.94 4.99 -59.82 -0.30 -15.24 16 7 C 0.26 6.57 2.21 -69.08 -0.15 6.42 16 8 H 0.08 2.37 7.58 -51.93 -0.39 1.98 16 9 C -0.55 -14.07 8.46 -34.44 -0.29 -14.36 16 10 H 0.08 1.86 7.74 -52.49 -0.41 1.45 16 11 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 12 N -0.84 -23.13 9.50 55.43 0.53 -22.60 16 13 Si 0.92 20.11 29.54 -169.99 -5.02 15.09 16 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 C 0.42 10.79 2.81 37.16 0.10 10.90 16 18 F -0.21 -5.27 16.94 2.25 0.04 -5.23 16 19 F -0.14 -3.86 12.91 2.25 0.03 -3.83 16 20 F -0.22 -5.61 15.68 2.25 0.04 -5.57 16 21 C -0.14 -1.37 7.34 -25.92 -0.19 -1.56 16 22 C -0.14 -1.44 7.99 -25.92 -0.21 -1.64 16 23 C -0.15 -1.90 7.45 -25.82 -0.19 -2.09 16 24 H 0.06 0.69 7.96 -51.93 -0.41 0.27 16 25 H 0.10 1.79 5.43 -51.93 -0.28 1.50 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.39 4.72 8.65 -40.82 -0.35 4.37 16 28 H 0.39 6.95 8.55 -40.82 -0.35 6.60 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.00 7.98 -51.93 -0.41 0.58 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 299.07 15.07 4.51 4.51 Total: -1.00 -30.10 299.07 -6.19 -36.29 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.28 Total: 8.59 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -1.52 Total: 12.73 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.04 Total: -49.07 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.07 Total: -13.50 kcal Atomic # 9 Polarization: -14.74 SS G_CDS: 0.10 Total: -14.64 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.10 -6.19 -36.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.215 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds