Wall clock time and date at job start Tue Mar 31 2020 01:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 112.84973 * 2 1 4 4 C 1.34774 * 120.00320 * 48.79677 * 3 2 1 5 5 O 1.21585 * 119.99765 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00239 * 180.02562 * 4 3 2 7 7 C 1.46495 * 119.99734 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.47625 * 325.00273 * 7 6 4 9 9 C 1.50702 * 109.47094 * 204.99991 * 7 6 4 10 10 H 1.08002 * 119.99844 * 0.02562 * 9 7 6 11 11 C 1.37877 * 120.00143 * 180.02562 * 9 7 6 12 12 N 1.31508 * 120.00213 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00041 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46897 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47458 * 119.99501 * 13 11 9 16 16 H 1.48499 * 109.47323 * 239.99879 * 13 11 9 17 17 C 1.53001 * 109.46956 * 85.00469 * 7 6 4 18 18 F 1.39895 * 109.47339 * 59.99510 * 17 7 6 19 19 F 1.39905 * 109.46913 * 179.97438 * 17 7 6 20 20 F 1.39904 * 109.46968 * 299.99520 * 17 7 6 21 21 C 1.53782 * 113.61779 * 228.79862 * 2 1 3 22 22 C 1.53781 * 87.08260 * 219.93457 * 21 2 1 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 2 24 24 H 1.09005 * 109.46921 * 191.20148 * 1 2 3 25 25 H 1.08996 * 109.47532 * 311.19881 * 1 2 3 26 26 H 1.08997 * 109.47245 * 71.20306 * 1 2 3 27 27 H 0.97003 * 119.99931 * 228.80854 * 3 2 1 28 28 H 0.96996 * 119.99708 * 0.02562 * 6 4 3 29 29 H 0.96994 * 120.00326 * 179.97438 * 12 11 9 30 30 H 1.09001 * 113.61250 * 105.38275 * 21 2 1 31 31 H 1.08997 * 113.61225 * 334.48116 * 21 2 1 32 32 H 1.09002 * 113.61445 * 139.98212 * 22 21 2 33 33 H 1.09002 * 113.61408 * 270.79943 * 22 21 2 34 34 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 35 35 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0989 1.3500 0.0000 4 6 1.6521 2.2696 0.8781 5 8 0.7771 1.9786 1.6707 6 7 2.1751 3.5118 0.8778 7 6 1.6897 4.5111 1.8327 8 1 0.6222 4.3668 1.9987 9 6 1.9299 5.8924 1.2799 10 1 2.3970 6.0136 0.3137 11 6 1.5534 7.0013 2.0077 12 7 0.9842 6.8537 3.1840 13 14 1.8505 8.7134 1.3222 14 1 2.4999 8.6076 -0.0093 15 1 0.5537 9.4240 1.1858 16 1 2.7347 9.4695 2.2449 17 6 2.4376 4.3552 3.1583 18 9 3.8078 4.5405 2.9453 19 9 1.9745 5.3100 4.0701 20 9 2.2146 3.0729 3.6715 21 6 2.1461 -0.9281 -1.0601 22 6 3.1937 -1.3119 -0.0018 23 6 2.1499 -0.9283 1.0604 24 1 -0.3633 -1.0081 0.1996 25 1 -0.3634 0.6769 0.7732 26 1 -0.3633 0.3311 -0.9728 27 1 2.7970 1.5821 -0.6322 28 1 2.8728 3.7440 0.2452 29 1 0.7197 7.6338 3.6961 30 1 2.5637 -0.3972 -1.9156 31 1 1.4952 -1.7532 -1.3494 32 1 3.4469 -2.3721 -0.0024 33 1 4.0725 -0.6669 -0.0034 34 1 1.5001 -1.7534 1.3519 35 1 2.5707 -0.3975 1.9143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912154.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:57 Heat of formation + Delta-G solvation = -165.965649 kcal Electronic energy + Delta-G solvation = -23576.839993 eV Core-core repulsion = 19581.597616 eV Total energy + Delta-G solvation = -3995.242377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.39590 -48.03088 -47.70981 -41.48161 -39.41579 -36.41472 -34.61763 -33.84359 -30.66853 -29.55308 -26.62742 -26.56814 -24.29155 -23.25225 -21.92716 -20.23128 -19.85442 -18.80678 -18.76767 -18.53182 -17.74497 -16.88769 -16.59568 -16.11608 -15.84062 -15.47756 -15.07283 -14.93528 -14.68288 -14.45201 -14.34323 -14.29555 -14.21486 -14.01406 -13.86538 -13.34239 -13.16514 -12.98476 -12.70441 -12.64120 -12.23202 -12.17967 -11.75297 -11.58790 -11.51405 -11.33020 -10.71607 -10.68609 -10.14170 -9.70392 -8.20414 -6.51129 1.46509 1.47629 1.60163 1.75558 2.18522 2.37764 2.58455 2.95490 3.30671 3.59414 3.73059 3.80926 3.90137 3.99949 4.04218 4.21369 4.58020 4.73406 4.84665 4.88475 4.89308 4.92616 5.10356 5.13891 5.21990 5.31904 5.43697 5.49674 5.63296 5.69258 5.85294 6.19153 6.54721 7.18463 7.26147 7.73957 8.72685 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.005442 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.382726 B = 5143.807573 C = 5487.453988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.153 3.847 3 N -0.713 5.713 4 C 0.696 3.304 5 O -0.617 6.617 6 N -0.723 5.723 7 C 0.272 3.728 8 H 0.045 0.955 9 C -0.560 4.560 10 H 0.092 0.908 11 C 0.014 3.986 12 N -0.876 5.876 13 Si 0.985 3.015 14 H -0.255 1.255 15 H -0.278 1.278 16 H -0.281 1.281 17 C 0.412 3.588 18 F -0.204 7.204 19 F -0.152 7.152 20 F -0.219 7.219 21 C -0.117 4.117 22 C -0.130 4.130 23 C -0.155 4.155 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.409 0.591 28 H 0.408 0.592 29 H 0.268 0.732 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -11.665 -9.814 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 N -0.370 5.370 4 C 0.397 3.603 5 O -0.497 6.497 6 N -0.377 5.377 7 C 0.164 3.836 8 H 0.063 0.937 9 C -0.596 4.596 10 H 0.110 0.890 11 C -0.191 4.191 12 N -0.510 5.510 13 Si 0.808 3.192 14 H -0.178 1.178 15 H -0.203 1.203 16 H -0.207 1.207 17 C 0.356 3.644 18 F -0.186 7.186 19 F -0.133 7.133 20 F -0.201 7.201 21 C -0.155 4.155 22 C -0.168 4.168 23 C -0.194 4.194 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.246 0.754 28 H 0.244 0.756 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.630 -11.845 -8.914 15.262 hybrid contribution 0.673 1.194 0.228 1.389 sum 4.302 -10.651 -8.685 14.401 Atomic orbital electron populations 1.22110 0.94465 1.02992 1.02260 1.21372 0.93128 0.80210 0.98718 1.44655 1.43369 1.10692 1.38241 1.16260 0.81686 0.80875 0.81525 1.90820 1.35284 1.80037 1.43585 1.45038 1.43386 1.09999 1.39270 1.19134 0.93619 0.88970 0.81841 0.93713 1.21258 1.44006 0.87956 1.06423 0.89002 1.26014 0.94087 1.04440 0.94593 1.70544 1.37230 1.31524 1.11698 0.85094 0.77952 0.77296 0.78850 1.17835 1.20319 1.20716 1.23384 0.77753 0.72045 0.91227 1.92976 1.35150 1.95147 1.95340 1.93373 1.87634 1.62196 1.70082 1.93064 1.94593 1.42788 1.89689 1.23227 0.97766 0.98380 0.96097 1.22806 0.96515 1.02456 0.94977 1.23476 0.99512 0.99322 0.97088 0.90255 0.92850 0.92344 0.75442 0.75574 0.92196 0.89410 0.86762 0.89400 0.90421 0.88559 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 9.08 71.98 0.65 -3.79 16 2 C 0.15 3.84 1.18 4.19 0.00 3.85 16 3 N -0.71 -20.55 5.22 -435.32 -2.27 -22.83 16 4 C 0.70 28.07 7.86 179.05 1.41 29.48 16 5 O -0.62 -30.21 12.42 -3.98 -0.05 -30.26 16 6 N -0.72 -29.78 4.99 -461.42 -2.30 -32.08 16 7 C 0.27 13.91 2.21 44.25 0.10 14.01 16 8 H 0.05 2.65 7.58 -2.39 -0.02 2.63 16 9 C -0.56 -28.47 8.46 25.60 0.22 -28.26 16 10 H 0.09 4.30 7.74 -2.91 -0.02 4.27 16 11 C 0.01 0.71 5.20 84.66 0.44 1.16 16 12 N -0.88 -49.12 9.50 21.45 0.20 -48.91 16 13 Si 0.98 40.69 29.54 68.60 2.03 42.72 16 14 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 15 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 16 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 17 C 0.41 21.88 2.81 71.98 0.20 22.08 16 18 F -0.20 -10.21 16.94 44.97 0.76 -9.44 16 19 F -0.15 -8.73 12.91 44.97 0.58 -8.15 16 20 F -0.22 -11.73 15.68 44.97 0.70 -11.03 16 21 C -0.12 -1.83 7.34 31.12 0.23 -1.60 16 22 C -0.13 -2.23 7.99 31.12 0.25 -1.99 16 23 C -0.16 -3.86 7.45 31.18 0.23 -3.63 16 24 H 0.08 1.79 7.96 -2.38 -0.02 1.77 16 25 H 0.05 2.00 5.43 -2.39 -0.01 1.99 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.41 8.93 8.65 -92.71 -0.80 8.13 16 28 H 0.41 14.01 8.55 -92.71 -0.79 13.21 16 29 H 0.27 14.21 8.31 -92.71 -0.77 13.43 16 30 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 31 H 0.11 1.37 8.10 -2.39 -0.02 1.35 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 2.13 7.98 -2.39 -0.02 2.11 16 35 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.13 299.07 2.93 -64.20 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: -0.45 Total: 24.47 kcal Atomic # 6 Polarization: 27.58 SS G_CDS: 3.73 Total: 31.31 kcal Atomic # 7 Polarization: -99.45 SS G_CDS: -4.37 Total: -103.82 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.05 Total: -30.26 kcal Atomic # 9 Polarization: -30.66 SS G_CDS: 2.05 Total: -28.62 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -67.13 2.93 -64.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912154.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.763 kcal (2) G-P(sol) polarization free energy of solvation -67.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds