Wall clock time and date at job start Tue Mar 31 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.56401 * 2 1 4 4 N 1.46497 * 109.46936 * 279.62880 * 3 2 1 5 5 C 1.34779 * 119.99765 * 185.55280 * 4 3 2 6 6 O 1.21581 * 120.00168 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00025 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99791 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47481 * 324.99769 * 8 7 5 10 10 C 1.50709 * 109.46896 * 204.99911 * 8 7 5 11 11 H 1.08001 * 119.99679 * 0.02562 * 10 8 7 12 12 C 1.37880 * 119.99870 * 179.97438 * 10 8 7 13 13 N 1.31515 * 119.99999 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 119.99768 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47240 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47109 * 120.00439 * 14 12 10 17 17 H 1.48498 * 109.47169 * 240.00078 * 14 12 10 18 18 C 1.52999 * 109.47424 * 85.00098 * 8 7 5 19 19 F 1.39904 * 109.47043 * 59.99963 * 18 8 7 20 20 F 1.39904 * 109.47172 * 179.97438 * 18 8 7 21 21 F 1.39902 * 109.47250 * 300.00001 * 18 8 7 22 22 C 1.52998 * 117.49578 * 214.31410 * 2 1 3 23 23 C 1.52995 * 117.49866 * 145.69303 * 2 1 3 24 24 H 1.09001 * 109.47170 * 208.59405 * 1 2 3 25 25 H 1.08996 * 109.46609 * 328.59385 * 1 2 3 26 26 H 1.09003 * 109.47006 * 88.59226 * 1 2 3 27 27 H 1.08999 * 109.46875 * 39.62389 * 3 2 1 28 28 H 1.08997 * 109.46957 * 159.62562 * 3 2 1 29 29 H 0.97001 * 120.00538 * 5.55669 * 4 3 2 30 30 H 0.96994 * 119.99606 * 0.02562 * 7 5 4 31 31 H 0.96992 * 119.99763 * 179.97438 * 13 12 10 32 32 H 1.08998 * 117.50080 * 145.01941 * 22 2 1 33 33 H 1.09000 * 117.50197 * 359.97438 * 22 2 1 34 34 H 1.09004 * 117.49936 * 359.97438 * 23 2 1 35 35 H 1.09001 * 117.50266 * 214.97579 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1903 1.3802 0.0000 4 7 2.1926 1.9204 -1.3617 5 6 2.8252 3.0810 -1.6252 6 8 3.3943 3.6794 -0.7329 7 7 2.8277 3.5777 -2.8782 8 6 3.5158 4.8389 -3.1646 9 1 3.4172 5.5088 -2.3105 10 6 2.9005 5.4818 -4.3809 11 1 2.0788 4.9994 -4.8893 12 6 3.3859 6.6865 -4.8439 13 7 4.3862 7.2741 -4.2245 14 14 2.6227 7.4837 -6.3510 15 1 1.5207 6.6278 -6.8592 16 1 2.0840 8.8184 -5.9856 17 1 3.6563 7.6389 -7.4058 18 6 4.9975 4.5632 -3.4281 19 9 5.1240 3.7034 -4.5246 20 9 5.6545 5.7676 -3.7023 21 9 5.5688 3.9663 -2.2991 22 6 2.2364 -1.1210 -0.7651 23 6 2.2365 -1.1210 0.7649 24 1 -0.3633 -0.9023 0.4918 25 1 -0.3632 0.8771 0.5355 26 1 -0.3633 0.0252 -1.0274 27 1 1.6330 2.0495 0.6554 28 1 3.2161 1.2923 0.3578 29 1 1.7388 1.4429 -2.0738 30 1 2.3740 3.1002 -3.5901 31 1 4.7279 8.1213 -4.5504 32 1 3.1715 -0.8752 -1.2684 33 1 1.6112 -1.8587 -1.2680 34 1 1.6112 -1.8583 1.2685 35 1 3.1716 -0.8753 1.2682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932913418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:46 Heat of formation + Delta-G solvation = -148.576998 kcal Electronic energy + Delta-G solvation = -22983.165397 eV Core-core repulsion = 18988.677049 eV Total energy + Delta-G solvation = -3994.488348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.28320 -45.93590 -45.55425 -39.52644 -38.13103 -34.69331 -33.58560 -32.46101 -29.04723 -28.34434 -25.98189 -24.49769 -22.65096 -21.56027 -20.11572 -19.44227 -18.16016 -16.84446 -16.75661 -16.54514 -16.15874 -15.47490 -15.20267 -14.77232 -14.57761 -14.15046 -13.54519 -13.30420 -13.11944 -12.85587 -12.75988 -12.47517 -12.33780 -12.25750 -12.21093 -11.92305 -11.76557 -11.65851 -11.28336 -11.12391 -10.84056 -10.74866 -10.41045 -10.37128 -10.05389 -9.60827 -9.45152 -8.74152 -8.67666 -8.10593 -6.21020 -4.44483 3.10202 3.19322 3.26861 3.30530 3.72362 3.84567 4.21523 4.50289 4.58978 4.62366 4.75632 4.84717 4.95958 4.97853 5.47347 5.49288 5.60777 5.74581 5.75924 5.83542 5.89265 5.93746 5.96765 5.98751 6.12917 6.27582 6.86035 6.89926 7.26550 7.42222 7.65641 7.74556 8.52983 8.72141 9.18784 9.30680 10.70729 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.004792 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.817254 B = 5842.053719 C = 6334.260012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.146 4.146 3 C 0.179 3.821 4 N -0.750 5.750 5 C 0.698 3.302 6 O -0.586 6.586 7 N -0.727 5.727 8 C 0.262 3.738 9 H 0.085 0.915 10 C -0.550 4.550 11 H 0.077 0.923 12 C 0.064 3.936 13 N -0.840 5.840 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.416 3.584 19 F -0.211 7.211 20 F -0.138 7.138 21 F -0.217 7.217 22 C -0.171 4.171 23 C -0.164 4.164 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.393 0.607 30 H 0.394 0.606 31 H 0.267 0.733 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 -13.173 4.403 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.146 4.146 3 C 0.054 3.946 4 N -0.407 5.407 5 C 0.397 3.603 6 O -0.464 6.464 7 N -0.380 5.380 8 C 0.156 3.844 9 H 0.102 0.898 10 C -0.588 4.588 11 H 0.095 0.905 12 C -0.145 4.145 13 N -0.473 5.473 14 Si 0.742 3.258 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.359 3.641 19 F -0.193 7.193 20 F -0.119 7.119 21 F -0.199 7.199 22 C -0.208 4.208 23 C -0.202 4.202 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.226 0.774 30 H 0.227 0.773 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.414 -12.399 5.249 14.512 hybrid contribution -0.363 -0.131 -1.508 1.557 sum -5.777 -12.530 3.740 14.296 Atomic orbital electron populations 1.21346 0.91588 1.02089 1.02040 1.21747 0.95195 0.90903 1.06776 1.20580 1.00122 0.90550 0.83305 1.45051 1.60030 1.24521 1.11054 1.16084 0.79574 0.80764 0.83836 1.90912 1.49461 1.60771 1.45214 1.45255 1.58268 1.26487 1.07944 1.19590 0.82872 0.81376 1.00592 0.89769 1.20921 1.19639 1.06171 1.12020 0.90476 1.25085 0.94415 0.96924 0.98028 1.70418 1.21872 1.15931 1.39076 0.86158 0.79087 0.79104 0.81448 1.19450 1.20587 1.20597 1.23187 0.94440 0.74183 0.72264 1.92980 1.97102 1.72289 1.56893 1.93400 1.83342 1.42056 1.93099 1.93071 1.87969 1.85179 1.53640 1.23022 1.02696 1.00627 0.94459 1.23099 1.02362 1.00099 0.94624 0.92478 0.91795 0.92149 0.91648 0.91580 0.77411 0.77301 0.92208 0.88419 0.88713 0.88612 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.87 37.16 0.37 -0.59 16 2 C -0.15 -1.43 2.11 -154.51 -0.33 -1.76 16 3 C 0.18 2.39 5.57 -4.04 -0.02 2.36 16 4 N -0.75 -11.25 5.52 -65.23 -0.36 -11.61 16 5 C 0.70 14.26 8.10 -86.91 -0.70 13.55 16 6 O -0.59 -14.46 14.90 5.29 0.08 -14.38 16 7 N -0.73 -15.15 4.99 -59.81 -0.30 -15.45 16 8 C 0.26 6.63 2.21 -69.08 -0.15 6.48 16 9 H 0.08 2.40 7.58 -51.93 -0.39 2.00 16 10 C -0.55 -14.13 8.46 -34.43 -0.29 -14.43 16 11 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 12 C 0.06 1.68 5.20 -17.82 -0.09 1.59 16 13 N -0.84 -23.22 9.50 55.43 0.53 -22.70 16 14 Si 0.92 20.16 29.54 -169.99 -5.02 15.14 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C 0.42 10.89 2.81 37.16 0.10 10.99 16 19 F -0.21 -5.29 16.94 2.25 0.04 -5.25 16 20 F -0.14 -3.88 12.91 2.25 0.03 -3.85 16 21 F -0.22 -5.69 15.67 2.25 0.04 -5.65 16 22 C -0.17 -1.56 9.93 -26.73 -0.27 -1.83 16 23 C -0.16 -1.43 9.82 -26.73 -0.26 -1.69 16 24 H 0.06 0.41 7.88 -51.93 -0.41 0.00 16 25 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 28 H 0.07 0.98 7.93 -51.93 -0.41 0.56 16 29 H 0.39 4.82 8.49 -40.82 -0.35 4.47 16 30 H 0.39 7.03 8.55 -40.82 -0.35 6.68 16 31 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -30.81 308.36 -6.35 -37.17 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.38 Total: 7.27 kcal Atomic # 6 Polarization: 16.32 SS G_CDS: -1.65 Total: 14.67 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: -0.13 Total: -49.76 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: 0.08 Total: -14.38 kcal Atomic # 9 Polarization: -14.85 SS G_CDS: 0.10 Total: -14.75 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.81 -6.35 -37.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932913418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.411 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds