Wall clock time and date at job start Tue Mar 31 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 115.56401 * 2 1 4 4 N 1.46497 * 109.46936 * 279.62880 * 3 2 1 5 5 C 1.34779 * 119.99765 * 185.55280 * 4 3 2 6 6 O 1.21581 * 120.00168 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00025 * 179.97438 * 5 4 3 8 8 C 1.46494 * 119.99791 * 180.02562 * 7 5 4 9 9 H 1.08999 * 109.47481 * 324.99769 * 8 7 5 10 10 C 1.50709 * 109.46896 * 204.99911 * 8 7 5 11 11 H 1.08001 * 119.99679 * 0.02562 * 10 8 7 12 12 C 1.37880 * 119.99870 * 179.97438 * 10 8 7 13 13 N 1.31515 * 119.99999 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 119.99768 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47240 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47109 * 120.00439 * 14 12 10 17 17 H 1.48498 * 109.47169 * 240.00078 * 14 12 10 18 18 C 1.52999 * 109.47424 * 85.00098 * 8 7 5 19 19 F 1.39904 * 109.47043 * 59.99963 * 18 8 7 20 20 F 1.39904 * 109.47172 * 179.97438 * 18 8 7 21 21 F 1.39902 * 109.47250 * 300.00001 * 18 8 7 22 22 C 1.52998 * 117.49578 * 214.31410 * 2 1 3 23 23 C 1.52995 * 117.49866 * 145.69303 * 2 1 3 24 24 H 1.09001 * 109.47170 * 208.59405 * 1 2 3 25 25 H 1.08996 * 109.46609 * 328.59385 * 1 2 3 26 26 H 1.09003 * 109.47006 * 88.59226 * 1 2 3 27 27 H 1.08999 * 109.46875 * 39.62389 * 3 2 1 28 28 H 1.08997 * 109.46957 * 159.62562 * 3 2 1 29 29 H 0.97001 * 120.00538 * 5.55669 * 4 3 2 30 30 H 0.96994 * 119.99606 * 0.02562 * 7 5 4 31 31 H 0.96992 * 119.99763 * 179.97438 * 13 12 10 32 32 H 1.08998 * 117.50080 * 145.01941 * 22 2 1 33 33 H 1.09000 * 117.50197 * 359.97438 * 22 2 1 34 34 H 1.09004 * 117.49936 * 359.97438 * 23 2 1 35 35 H 1.09001 * 117.50266 * 214.97579 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1903 1.3802 0.0000 4 7 2.1926 1.9204 -1.3617 5 6 2.8252 3.0810 -1.6252 6 8 3.3943 3.6794 -0.7329 7 7 2.8277 3.5777 -2.8782 8 6 3.5158 4.8389 -3.1646 9 1 3.4172 5.5088 -2.3105 10 6 2.9005 5.4818 -4.3809 11 1 2.0788 4.9994 -4.8893 12 6 3.3859 6.6865 -4.8439 13 7 4.3862 7.2741 -4.2245 14 14 2.6227 7.4837 -6.3510 15 1 1.5207 6.6278 -6.8592 16 1 2.0840 8.8184 -5.9856 17 1 3.6563 7.6389 -7.4058 18 6 4.9975 4.5632 -3.4281 19 9 5.1240 3.7034 -4.5246 20 9 5.6545 5.7676 -3.7023 21 9 5.5688 3.9663 -2.2991 22 6 2.2364 -1.1210 -0.7651 23 6 2.2365 -1.1210 0.7649 24 1 -0.3633 -0.9023 0.4918 25 1 -0.3632 0.8771 0.5355 26 1 -0.3633 0.0252 -1.0274 27 1 1.6330 2.0495 0.6554 28 1 3.2161 1.2923 0.3578 29 1 1.7388 1.4429 -2.0738 30 1 2.3740 3.1002 -3.5901 31 1 4.7279 8.1213 -4.5504 32 1 3.1715 -0.8752 -1.2684 33 1 1.6112 -1.8587 -1.2680 34 1 1.6112 -1.8583 1.2685 35 1 3.1716 -0.8753 1.2682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932913418.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:46 Heat of formation + Delta-G solvation = -169.242175 kcal Electronic energy + Delta-G solvation = -22984.061507 eV Core-core repulsion = 18988.677049 eV Total energy + Delta-G solvation = -3995.384457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.39812 -48.03269 -47.71100 -41.02398 -39.14598 -36.52457 -35.05714 -34.34199 -30.49156 -29.44653 -27.25254 -26.52675 -23.63234 -23.21550 -21.80828 -20.51881 -19.71751 -18.84946 -18.73602 -18.53798 -17.83278 -16.96033 -16.58156 -16.46580 -15.93452 -15.40774 -15.09871 -14.96315 -14.71986 -14.55384 -14.44427 -14.28079 -14.01347 -13.98096 -13.86080 -13.70592 -13.09878 -13.01823 -12.71627 -12.64395 -12.34349 -12.19570 -12.09257 -11.53854 -11.37622 -11.13757 -10.68768 -10.68390 -10.30394 -9.75292 -8.19932 -6.50697 1.47300 1.48321 1.60727 1.72077 2.15025 2.38050 2.57386 2.84077 2.95928 3.41009 3.67788 3.79801 3.81927 3.89983 4.02971 4.09773 4.21398 4.62796 4.74544 4.81234 4.90323 4.99346 5.00296 5.06815 5.11974 5.29764 5.39887 5.44923 5.52067 5.56561 5.66887 6.15533 6.54970 7.17551 7.22653 7.66696 8.73270 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027104 B = 0.004792 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.817254 B = 5842.053719 C = 6334.260012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.150 4.150 3 C 0.177 3.823 4 N -0.726 5.726 5 C 0.693 3.307 6 O -0.632 6.632 7 N -0.720 5.720 8 C 0.270 3.730 9 H 0.045 0.955 10 C -0.559 4.559 11 H 0.093 0.907 12 C 0.014 3.986 13 N -0.876 5.876 14 Si 0.985 3.015 15 H -0.254 1.254 16 H -0.278 1.278 17 H -0.281 1.281 18 C 0.412 3.588 19 F -0.203 7.203 20 F -0.151 7.151 21 F -0.220 7.220 22 C -0.167 4.167 23 C -0.157 4.157 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.048 0.952 29 H 0.410 0.590 30 H 0.410 0.590 31 H 0.268 0.732 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.909 -14.844 3.405 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.150 4.150 3 C 0.053 3.947 4 N -0.382 5.382 5 C 0.393 3.607 6 O -0.513 6.513 7 N -0.374 5.374 8 C 0.162 3.838 9 H 0.063 0.937 10 C -0.596 4.596 11 H 0.111 0.889 12 C -0.192 4.192 13 N -0.510 5.510 14 Si 0.809 3.191 15 H -0.178 1.178 16 H -0.204 1.204 17 H -0.207 1.207 18 C 0.356 3.644 19 F -0.185 7.185 20 F -0.132 7.132 21 F -0.202 7.202 22 C -0.204 4.204 23 C -0.194 4.194 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.246 0.754 30 H 0.246 0.754 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.247 -14.145 4.240 16.449 hybrid contribution 0.226 0.333 -1.126 1.195 sum -7.021 -13.812 3.114 15.804 Atomic orbital electron populations 1.21343 0.90115 1.02698 1.02577 1.21630 0.96030 0.88927 1.08429 1.20687 0.99492 0.92639 0.81910 1.44882 1.58349 1.22556 1.12442 1.16289 0.79604 0.81732 0.83046 1.90881 1.51536 1.62437 1.46465 1.44980 1.58123 1.25460 1.08820 1.19178 0.82828 0.82579 0.99215 0.93731 1.21254 1.19932 1.06448 1.11945 0.88897 1.26023 0.94701 0.97462 1.00972 1.70548 1.23342 1.16376 1.40717 0.85081 0.78418 0.78157 0.77458 1.17793 1.20355 1.20714 1.23368 0.94849 0.73849 0.72342 1.92980 1.97098 1.71946 1.56480 1.93373 1.83680 1.42972 1.93207 1.93061 1.88086 1.85161 1.53862 1.23062 1.02173 1.00324 0.94859 1.23204 1.02205 0.99465 0.94545 0.90695 0.92482 0.91584 0.92360 0.93374 0.75399 0.75373 0.92188 0.89837 0.86749 0.86449 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.87 71.98 0.71 -0.86 16 2 C -0.15 -2.65 2.11 -52.18 -0.11 -2.76 16 3 C 0.18 4.64 5.57 86.38 0.48 5.12 16 4 N -0.73 -21.20 5.52 -478.54 -2.64 -23.84 16 5 C 0.69 28.47 8.10 179.05 1.45 29.92 16 6 O -0.63 -32.08 14.90 -3.97 -0.06 -32.14 16 7 N -0.72 -29.81 4.99 -461.41 -2.30 -32.12 16 8 C 0.27 13.84 2.21 44.25 0.10 13.94 16 9 H 0.04 2.65 7.58 -2.39 -0.02 2.63 16 10 C -0.56 -28.39 8.46 25.60 0.22 -28.18 16 11 H 0.09 4.33 7.74 -2.91 -0.02 4.30 16 12 C 0.01 0.70 5.20 84.66 0.44 1.14 16 13 N -0.88 -49.03 9.50 21.45 0.20 -48.83 16 14 Si 0.99 40.58 29.54 68.60 2.03 42.61 16 15 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 16 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 18 C 0.41 21.89 2.81 71.98 0.20 22.09 16 19 F -0.20 -10.11 16.94 44.97 0.76 -9.35 16 20 F -0.15 -8.69 12.91 44.97 0.58 -8.11 16 21 F -0.22 -11.76 15.67 44.97 0.70 -11.06 16 22 C -0.17 -2.65 9.93 30.59 0.30 -2.35 16 23 C -0.16 -2.37 9.82 30.59 0.30 -2.07 16 24 H 0.07 0.82 7.88 -2.39 -0.02 0.80 16 25 H 0.06 0.90 7.95 -2.39 -0.02 0.88 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.62 7.99 -2.39 -0.02 1.61 16 28 H 0.05 1.44 7.93 -2.39 -0.02 1.43 16 29 H 0.41 9.27 8.49 -92.71 -0.79 8.48 16 30 H 0.41 14.05 8.55 -92.71 -0.79 13.26 16 31 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 1.30 8.04 -2.38 -0.02 1.28 16 35 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 Total: -1.00 -66.91 308.36 2.93 -63.98 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.44 Total: 22.87 kcal Atomic # 6 Polarization: 31.89 SS G_CDS: 4.09 Total: 35.99 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -4.74 Total: -104.78 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.06 Total: -32.14 kcal Atomic # 9 Polarization: -30.56 SS G_CDS: 2.05 Total: -28.51 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -66.91 2.93 -63.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932913418.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.260 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds