Wall clock time and date at job start Tue Mar 31 2020 01:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53788 * 113.61728 * 2 1 4 4 C 1.53784 * 87.07496 * 89.11948 * 3 2 1 5 5 N 1.46498 * 113.61005 * 139.98257 * 4 3 2 6 6 C 1.34784 * 120.00171 * 154.99665 * 5 4 3 7 7 O 1.21587 * 119.99271 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00264 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99955 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47175 * 324.99716 * 9 8 6 11 11 C 1.50697 * 109.46896 * 204.99514 * 9 8 6 12 12 H 1.07994 * 120.00496 * 0.02562 * 11 9 8 13 13 C 1.37887 * 119.99690 * 179.97438 * 11 9 8 14 14 N 1.31507 * 120.00093 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99676 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47515 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46678 * 119.99923 * 15 13 11 18 18 H 1.48493 * 109.47346 * 239.99833 * 15 13 11 19 19 C 1.53006 * 109.46998 * 84.99585 * 9 8 6 20 20 F 1.39900 * 109.46764 * 179.97438 * 19 9 8 21 21 F 1.39897 * 109.47129 * 299.99840 * 19 9 8 22 22 F 1.39903 * 109.46814 * 60.00332 * 19 9 8 23 23 C 1.53774 * 113.61964 * 97.50192 * 2 1 3 24 24 H 1.09001 * 109.47365 * 59.99636 * 1 2 3 25 25 H 1.08996 * 109.47482 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46509 * 299.99888 * 1 2 3 27 27 H 1.09005 * 112.84803 * 228.80886 * 2 1 3 28 28 H 1.09001 * 113.60997 * 334.57379 * 3 2 1 29 29 H 1.08999 * 113.61115 * 203.66556 * 3 2 1 30 30 H 1.08999 * 113.61587 * 270.79848 * 4 3 2 31 31 H 0.97004 * 120.00658 * 335.00210 * 5 4 3 32 32 H 0.96997 * 119.99935 * 359.97438 * 8 6 5 33 33 H 0.96999 * 120.00118 * 179.97438 * 14 13 11 34 34 H 1.09003 * 113.61854 * 156.33055 * 23 2 1 35 35 H 1.09010 * 113.61204 * 25.42929 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1461 1.4091 0.0000 4 6 2.0930 1.3466 1.5357 5 7 3.2741 1.9181 2.1873 6 6 3.1854 2.3955 3.4446 7 8 2.1249 2.3522 4.0378 8 7 4.2718 2.9216 4.0439 9 6 4.1755 3.4400 5.4107 10 1 3.1952 3.8929 5.5593 11 6 5.2466 4.4768 5.6314 12 1 5.9304 4.7252 4.8333 13 6 5.3528 5.1092 6.8521 14 7 4.5192 4.8079 7.8235 15 14 6.6801 6.3950 7.1254 16 1 7.4811 6.5511 5.8847 17 1 6.0477 7.6931 7.4723 18 1 7.5661 5.9635 8.2361 19 6 4.3634 2.2928 6.4057 20 9 4.2719 2.7880 7.7109 21 9 3.3691 1.3303 6.2008 22 9 5.6216 1.7116 6.2150 23 6 2.1461 -0.1839 1.3969 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.9532 -0.6616 -0.7559 28 1 1.4945 2.1704 -0.4288 29 1 3.1591 1.4426 -0.4009 30 1 1.1575 1.7162 1.9556 31 1 4.1201 1.9530 1.7139 32 1 5.1177 2.9564 3.5705 33 1 4.5942 5.2525 8.6824 34 1 3.1591 -0.5859 1.3779 35 1 1.4945 -0.7086 2.0958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932914472.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:02 Heat of formation + Delta-G solvation = -175.382538 kcal Electronic energy + Delta-G solvation = -23068.777330 eV Core-core repulsion = 19073.126606 eV Total energy + Delta-G solvation = -3995.650723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.40152 -48.03591 -47.71522 -41.24742 -39.66572 -36.46858 -34.81076 -34.18598 -30.46551 -29.15212 -26.58793 -26.57407 -24.59700 -23.22769 -21.87386 -20.25594 -19.55493 -18.85942 -18.72846 -18.54962 -17.89268 -17.29725 -16.71298 -16.09801 -15.71694 -15.61648 -15.00559 -14.94897 -14.53609 -14.45269 -14.44026 -14.28235 -14.04938 -13.97111 -13.86378 -13.41821 -13.20244 -13.03425 -12.74706 -12.64650 -12.40213 -12.19392 -11.97817 -11.54250 -11.29112 -11.21909 -11.06956 -10.69043 -10.23314 -9.70150 -8.20337 -6.51130 1.47068 1.48044 1.60860 1.79633 2.14885 2.38147 2.57383 2.95509 3.37044 3.60188 3.66503 3.80350 3.89272 3.94106 3.98989 4.20815 4.58371 4.62874 4.77374 4.82443 4.89121 4.98194 5.04449 5.15510 5.17510 5.35393 5.45085 5.52626 5.54158 5.66602 5.72851 6.18658 6.54611 7.17925 7.24270 7.68976 8.72939 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.004697 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.431716 B = 5960.262965 C = 6391.689188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 C -0.128 4.128 4 C 0.125 3.875 5 N -0.720 5.720 6 C 0.693 3.307 7 O -0.633 6.633 8 N -0.721 5.721 9 C 0.270 3.730 10 H 0.044 0.956 11 C -0.560 4.560 12 H 0.093 0.907 13 C 0.014 3.986 14 N -0.876 5.876 15 Si 0.985 3.015 16 H -0.254 1.254 17 H -0.278 1.278 18 H -0.281 1.281 19 C 0.412 3.588 20 F -0.151 7.151 21 F -0.220 7.220 22 F -0.203 7.203 23 C -0.153 4.153 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.268 0.732 34 H 0.091 0.909 35 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -6.248 -15.501 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 C -0.166 4.166 4 C 0.020 3.980 5 N -0.376 5.376 6 C 0.393 3.607 7 O -0.514 6.514 8 N -0.375 5.375 9 C 0.162 3.838 10 H 0.062 0.938 11 C -0.596 4.596 12 H 0.111 0.889 13 C -0.192 4.192 14 N -0.510 5.510 15 Si 0.809 3.191 16 H -0.178 1.178 17 H -0.203 1.203 18 H -0.207 1.207 19 C 0.356 3.644 20 F -0.133 7.133 21 F -0.202 7.202 22 F -0.185 7.185 23 C -0.192 4.192 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.248 0.752 32 H 0.246 0.754 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.358 -6.259 -14.752 16.082 hybrid contribution 1.051 0.268 0.714 1.299 sum -0.307 -5.992 -14.038 15.267 Atomic orbital electron populations 1.21663 0.93691 1.02392 1.01967 1.22124 0.95975 0.97171 0.96596 1.23416 1.02965 0.97811 0.92387 1.22576 0.88186 0.93711 0.93520 1.45004 1.14458 1.65289 1.12838 1.16377 0.83866 0.78048 0.82442 1.90871 1.29744 1.64534 1.66215 1.45004 1.12023 1.64775 1.15657 1.19172 1.00439 0.87673 0.76545 0.93804 1.21256 1.16412 1.21540 1.00431 0.88890 1.26027 0.98994 0.99113 0.95025 1.70545 1.37008 1.39207 1.04228 0.85080 0.77839 0.77473 0.78719 1.17782 1.20349 1.20699 1.23368 0.72005 0.84016 0.85021 1.93371 1.95599 1.85488 1.38800 1.93062 1.63369 1.68462 1.95266 1.92979 1.43622 1.86403 1.95499 1.23582 1.01854 0.95896 0.97907 0.90918 0.91646 0.93947 0.88087 0.90207 0.87668 0.89745 0.75232 0.75368 0.92183 0.89097 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.59 71.98 0.69 -1.50 16 2 C -0.10 -1.57 4.55 -10.27 -0.05 -1.61 16 3 C -0.13 -2.10 7.42 31.12 0.23 -1.87 16 4 C 0.13 3.21 3.89 45.52 0.18 3.39 16 5 N -0.72 -20.73 5.36 -455.29 -2.44 -23.17 16 6 C 0.69 28.42 8.10 179.05 1.45 29.87 16 7 O -0.63 -32.17 14.52 -3.99 -0.06 -32.23 16 8 N -0.72 -29.85 4.99 -461.41 -2.30 -32.15 16 9 C 0.27 13.87 2.21 44.25 0.10 13.97 16 10 H 0.04 2.62 7.58 -2.39 -0.02 2.60 16 11 C -0.56 -28.49 8.46 25.60 0.22 -28.27 16 12 H 0.09 4.33 7.74 -2.91 -0.02 4.31 16 13 C 0.01 0.70 5.20 84.66 0.44 1.14 16 14 N -0.88 -49.13 9.51 21.45 0.20 -48.93 16 15 Si 0.99 40.62 29.54 68.60 2.03 42.65 16 16 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 17 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 18 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 19 C 0.41 21.95 2.81 71.98 0.20 22.15 16 20 F -0.15 -8.73 12.91 44.97 0.58 -8.15 16 21 F -0.22 -11.81 15.68 44.97 0.71 -11.10 16 22 F -0.20 -10.13 16.94 44.97 0.76 -9.37 16 23 C -0.15 -3.35 7.44 31.12 0.23 -3.12 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.04 0.82 7.34 -2.39 -0.02 0.80 16 27 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 29 H 0.10 1.33 8.12 -2.39 -0.02 1.31 16 30 H 0.08 2.68 6.98 -2.39 -0.02 2.67 16 31 H 0.41 8.71 8.74 -92.71 -0.81 7.90 16 32 H 0.41 13.99 8.55 -92.71 -0.79 13.19 16 33 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 Total: -1.00 -67.90 302.55 2.70 -65.20 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -0.46 Total: 23.11 kcal Atomic # 6 Polarization: 30.46 SS G_CDS: 3.69 Total: 34.15 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -4.54 Total: -104.25 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.06 Total: -32.23 kcal Atomic # 9 Polarization: -30.67 SS G_CDS: 2.05 Total: -28.62 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -67.90 2.70 -65.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932914472.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.185 kcal (2) G-P(sol) polarization free energy of solvation -67.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds