Wall clock time and date at job start Tue Mar 31 2020 01:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 14 12 17 17 C 1.53779 * 113.61063 * 274.12973 * 16 15 14 18 18 C 1.53958 * 87.01925 * 220.05323 * 17 16 15 19 19 C 1.53782 * 87.11035 * 25.36334 * 18 17 16 20 20 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 21 21 F 1.39903 * 109.47440 * 60.00123 * 20 9 7 22 22 F 1.39899 * 109.47255 * 180.02562 * 20 9 7 23 23 F 1.39900 * 109.47102 * 299.99874 * 20 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 26 26 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 27 27 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 28 28 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 29 29 H 1.08997 * 112.85253 * 45.33193 * 16 15 14 30 30 H 1.08994 * 113.61802 * 334.57360 * 17 16 15 31 31 H 1.09001 * 113.61405 * 105.47411 * 17 16 15 32 32 H 1.09003 * 113.53302 * 270.81392 * 18 17 16 33 33 H 1.09002 * 113.66816 * 139.94115 * 18 17 16 34 34 H 1.08996 * 113.61349 * 220.09072 * 19 18 17 35 35 H 1.08996 * 113.68768 * 89.19846 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4848 -8.1194 -0.9116 17 6 4.4643 -8.0543 -2.0953 18 6 4.5398 -9.5898 -2.0133 19 6 3.1430 -9.5465 -1.3716 20 6 0.3719 -2.5805 1.2490 21 9 -0.5373 -1.5171 1.2496 22 9 -0.3272 -3.7922 1.2493 23 9 1.1766 -2.5067 2.3910 24 1 -0.4850 0.8401 0.0004 25 1 3.0969 -3.4866 0.3545 26 1 3.6064 -5.7108 -0.1383 27 1 1.4635 -7.5216 -0.4654 28 1 2.0364 -7.0326 -2.0782 29 1 3.9731 -8.0797 0.0620 30 1 4.0120 -7.6879 -3.0168 31 1 5.4044 -7.5566 -1.8572 32 1 5.3180 -9.9521 -1.3415 33 1 4.5581 -10.0796 -2.9870 34 1 3.0179 -10.2518 -0.5500 35 1 2.3277 -9.5890 -2.0938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932921172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:39 Heat of formation + Delta-G solvation = -154.529094 kcal Electronic energy + Delta-G solvation = -22813.975728 eV Core-core repulsion = 18819.229278 eV Total energy + Delta-G solvation = -3994.746450 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.27923 -45.93026 -45.55100 -39.61467 -38.60507 -34.79013 -33.85623 -32.48815 -29.01922 -27.22627 -25.77578 -24.51447 -22.92724 -21.44355 -20.26064 -19.54628 -18.19569 -16.88882 -16.75309 -16.54186 -16.22850 -15.75046 -15.00172 -14.83053 -14.63382 -14.54068 -13.61849 -13.24471 -13.15986 -12.84026 -12.61913 -12.47333 -12.33165 -12.23075 -12.06461 -11.91936 -11.77579 -11.69871 -11.13904 -10.87106 -10.75970 -10.75124 -10.53723 -10.39380 -10.35352 -9.61809 -9.47372 -8.73575 -8.67021 -8.10102 -6.20617 -4.44258 3.20247 3.22234 3.27411 3.31879 3.85073 4.21101 4.43235 4.46928 4.54488 4.63792 4.68384 4.95419 4.97270 5.20176 5.36370 5.53536 5.58432 5.70126 5.72454 5.84068 5.89103 5.94327 5.98451 6.10070 6.27782 6.32070 6.87871 6.90185 7.26780 7.42113 7.65780 7.74456 8.52844 8.72420 9.19043 9.31158 10.71041 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.004446 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.010663 B = 6296.379080 C = 6885.833042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.277 1.277 5 H -0.271 1.271 6 H -0.283 1.283 7 C -0.551 4.551 8 H 0.077 0.923 9 C 0.262 3.738 10 H 0.085 0.915 11 N -0.727 5.727 12 C 0.697 3.303 13 O -0.586 6.586 14 N -0.753 5.753 15 C 0.151 3.849 16 C -0.124 4.124 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.131 4.131 20 C 0.415 3.585 21 F -0.138 7.138 22 F -0.216 7.216 23 F -0.211 7.211 24 H 0.268 0.732 25 H 0.394 0.606 26 H 0.392 0.608 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.594 -12.910 -1.253 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.156 3.844 10 H 0.102 0.898 11 N -0.380 5.380 12 C 0.397 3.603 13 O -0.463 6.463 14 N -0.409 5.409 15 C 0.026 3.974 16 C -0.143 4.143 17 C -0.174 4.174 18 C -0.181 4.181 19 C -0.169 4.169 20 C 0.359 3.641 21 F -0.119 7.119 22 F -0.198 7.198 23 F -0.193 7.193 24 H 0.078 0.922 25 H 0.227 0.773 26 H 0.225 0.775 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.305 -12.913 -1.665 14.929 hybrid contribution 1.063 0.949 0.729 1.601 sum 8.368 -11.965 -0.935 14.631 Atomic orbital electron populations 1.70411 1.05842 1.27301 1.43741 1.25084 0.95150 1.00073 0.94118 0.86213 0.79521 0.81695 0.78383 1.20255 1.19530 1.20817 1.20879 0.93757 0.88132 1.56052 0.90533 1.19588 0.88296 0.85000 0.91554 0.89753 1.45260 1.17317 1.09764 1.65649 1.16099 0.84413 0.80548 0.79251 1.90911 1.19729 1.82964 1.52725 1.45088 1.16119 1.10842 1.68886 1.21108 0.96128 0.81103 0.99036 1.22816 0.96722 0.95409 0.99322 1.23028 0.99530 0.96186 0.98642 1.22844 0.97420 0.96784 1.01020 1.22863 0.97575 0.95812 1.00663 1.23188 0.80917 0.72787 0.87206 1.93399 1.68441 1.53849 1.96212 1.93071 1.81471 1.48334 1.96968 1.92979 1.74438 1.96198 1.55643 0.92154 0.77312 0.77527 0.91899 0.91840 0.88766 0.89808 0.91474 0.90332 0.91488 0.91334 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.25 9.50 55.43 0.53 -22.72 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.92 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.55 -14.17 8.46 -34.44 -0.29 -14.47 16 8 H 0.08 1.85 7.74 -52.49 -0.41 1.45 16 9 C 0.26 6.65 2.21 -69.09 -0.15 6.49 16 10 H 0.08 2.41 7.58 -51.93 -0.39 2.01 16 11 N -0.73 -15.20 4.99 -59.82 -0.30 -15.50 16 12 C 0.70 14.31 8.10 -86.92 -0.70 13.60 16 13 O -0.59 -14.52 14.92 5.29 0.08 -14.45 16 14 N -0.75 -11.25 5.56 -65.22 -0.36 -11.61 16 15 C 0.15 1.97 5.50 -4.04 -0.02 1.95 16 16 C -0.12 -1.16 3.75 -89.81 -0.34 -1.50 16 17 C -0.14 -1.17 7.65 -25.83 -0.20 -1.37 16 18 C -0.14 -1.07 8.09 -25.82 -0.21 -1.28 16 19 C -0.13 -1.07 7.65 -25.92 -0.20 -1.27 16 20 C 0.42 10.91 2.81 37.16 0.10 11.02 16 21 F -0.14 -3.89 12.91 2.25 0.03 -3.86 16 22 F -0.22 -5.70 15.67 2.25 0.04 -5.66 16 23 F -0.21 -5.30 16.94 2.25 0.04 -5.26 16 24 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 25 H 0.39 7.02 8.55 -40.82 -0.35 6.67 16 26 H 0.39 4.66 8.49 -40.82 -0.35 4.31 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.89 7.87 -51.93 -0.41 0.48 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -31.05 304.16 -6.90 -37.94 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.41 Total: 6.60 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: -2.10 Total: 14.78 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.13 Total: -49.83 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 0.10 Total: -14.78 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.05 -6.90 -37.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932921172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.586 kcal (2) G-P(sol) polarization free energy of solvation -31.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds