Wall clock time and date at job start Tue Mar 31 2020 01:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21585 * 120.00300 * 0.02562 * 12 11 9 14 14 N 1.34779 * 119.99711 * 180.02562 * 12 11 9 15 15 C 1.46507 * 119.99956 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.46991 * 179.97438 * 15 14 12 17 17 C 1.53779 * 113.61063 * 274.12973 * 16 15 14 18 18 C 1.53958 * 87.01925 * 220.05323 * 17 16 15 19 19 C 1.53782 * 87.11035 * 25.36334 * 18 17 16 20 20 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 21 21 F 1.39903 * 109.47440 * 60.00123 * 20 9 7 22 22 F 1.39899 * 109.47255 * 180.02562 * 20 9 7 23 23 F 1.39900 * 109.47102 * 299.99874 * 20 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 26 26 H 0.97001 * 120.00313 * 359.97438 * 14 12 11 27 27 H 1.09005 * 109.46616 * 299.99557 * 15 14 12 28 28 H 1.08993 * 109.46852 * 59.99259 * 15 14 12 29 29 H 1.08997 * 112.85253 * 45.33193 * 16 15 14 30 30 H 1.08994 * 113.61802 * 334.57360 * 17 16 15 31 31 H 1.09001 * 113.61405 * 105.47411 * 17 16 15 32 32 H 1.09003 * 113.53302 * 270.81392 * 18 17 16 33 33 H 1.09002 * 113.66816 * 139.94115 * 18 17 16 34 34 H 1.08996 * 113.61349 * 220.09072 * 19 18 17 35 35 H 1.08996 * 113.68768 * 89.19846 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7166 -4.9703 -0.9392 14 7 2.7125 -5.8369 -0.4933 15 6 2.3147 -7.1408 -1.0299 16 6 3.4848 -8.1194 -0.9116 17 6 4.4643 -8.0543 -2.0953 18 6 4.5398 -9.5898 -2.0133 19 6 3.1430 -9.5465 -1.3716 20 6 0.3719 -2.5805 1.2490 21 9 -0.5373 -1.5171 1.2496 22 9 -0.3272 -3.7922 1.2493 23 9 1.1766 -2.5067 2.3910 24 1 -0.4850 0.8401 0.0004 25 1 3.0969 -3.4866 0.3545 26 1 3.6064 -5.7108 -0.1383 27 1 1.4635 -7.5216 -0.4654 28 1 2.0364 -7.0326 -2.0782 29 1 3.9731 -8.0797 0.0620 30 1 4.0120 -7.6879 -3.0168 31 1 5.4044 -7.5566 -1.8572 32 1 5.3180 -9.9521 -1.3415 33 1 4.5581 -10.0796 -2.9870 34 1 3.0179 -10.2518 -0.5500 35 1 2.3277 -9.5890 -2.0938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932921172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:39 Heat of formation + Delta-G solvation = -175.404064 kcal Electronic energy + Delta-G solvation = -22814.880935 eV Core-core repulsion = 18819.229278 eV Total energy + Delta-G solvation = -3995.651657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.39465 -48.02748 -47.70806 -41.01832 -39.60797 -36.57773 -35.34284 -34.39029 -30.65495 -28.56287 -26.56300 -26.43633 -24.08396 -23.11433 -21.89534 -20.51686 -19.73069 -18.86734 -18.75075 -18.53921 -17.89980 -17.04125 -16.65207 -16.28868 -16.08622 -15.61953 -15.09760 -14.94527 -14.80167 -14.52288 -14.43714 -14.40042 -14.27447 -14.00810 -13.85593 -13.28666 -13.02691 -12.83236 -12.75633 -12.64711 -12.53614 -12.19292 -11.55911 -11.49554 -11.38522 -11.11477 -11.05594 -10.67952 -10.29026 -9.73755 -8.19595 -6.50531 1.47850 1.49142 1.60011 1.77273 2.15742 2.38573 2.58134 2.96047 3.32748 3.71737 3.76136 3.81057 3.87415 3.91078 4.03588 4.21797 4.36796 4.56584 4.74564 4.89962 4.92134 4.92781 5.03332 5.14963 5.15988 5.35013 5.45104 5.53357 5.56927 5.66936 5.67887 6.16452 6.54803 7.18018 7.23542 7.67773 8.73362 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.004446 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.010663 B = 6296.379080 C = 6885.833042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.014 3.986 3 Si 0.985 3.015 4 H -0.274 1.274 5 H -0.256 1.256 6 H -0.283 1.283 7 C -0.560 4.560 8 H 0.093 0.907 9 C 0.269 3.731 10 H 0.045 0.955 11 N -0.720 5.720 12 C 0.692 3.308 13 O -0.633 6.633 14 N -0.729 5.729 15 C 0.149 3.851 16 C -0.118 4.118 17 C -0.138 4.138 18 C -0.134 4.134 19 C -0.132 4.132 20 C 0.412 3.588 21 F -0.151 7.151 22 F -0.219 7.219 23 F -0.203 7.203 24 H 0.268 0.732 25 H 0.410 0.590 26 H 0.411 0.589 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.084 -13.367 -0.967 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.191 4.191 3 Si 0.809 3.191 4 H -0.200 1.200 5 H -0.180 1.180 6 H -0.209 1.209 7 C -0.597 4.597 8 H 0.111 0.889 9 C 0.161 3.839 10 H 0.063 0.937 11 N -0.374 5.374 12 C 0.392 3.608 13 O -0.514 6.514 14 N -0.386 5.386 15 C 0.025 3.975 16 C -0.137 4.137 17 C -0.176 4.176 18 C -0.172 4.172 19 C -0.170 4.170 20 C 0.356 3.644 21 F -0.132 7.132 22 F -0.201 7.201 23 F -0.185 7.185 24 H 0.078 0.922 25 H 0.247 0.753 26 H 0.247 0.753 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.873 -13.419 -1.367 16.715 hybrid contribution 0.264 1.008 0.637 1.221 sum 10.137 -12.411 -0.730 16.041 Atomic orbital electron populations 1.70545 1.07544 1.28146 1.44729 1.26023 0.95901 1.03732 0.93474 0.85131 0.78571 0.77011 0.78420 1.19953 1.17997 1.20859 1.21221 0.94554 0.88206 1.55702 0.88899 1.19182 0.88473 0.86686 0.89539 0.93715 1.44984 1.17367 1.09106 1.65955 1.16327 0.84463 0.81174 0.78851 1.90879 1.22083 1.83744 1.54665 1.44933 1.16030 1.10055 1.67557 1.21269 0.97632 0.80700 0.97880 1.22834 0.95436 0.94921 1.00481 1.23034 0.99444 0.97381 0.97694 1.22823 0.97035 0.95737 1.01575 1.22895 0.98145 0.94969 1.00965 1.23369 0.80890 0.72326 0.87861 1.93373 1.69003 1.54526 1.96325 1.93061 1.81630 1.48436 1.97019 1.92979 1.74110 1.96154 1.55249 0.92182 0.75343 0.75308 0.93340 0.93007 0.87379 0.90810 0.90603 0.89026 0.90893 0.90383 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.05 9.50 21.45 0.20 -48.84 16 2 C 0.01 0.72 5.20 84.66 0.44 1.16 16 3 Si 0.99 40.56 29.54 68.60 2.03 42.59 16 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.56 -28.46 8.46 25.60 0.22 -28.24 16 8 H 0.09 4.31 7.74 -2.91 -0.02 4.29 16 9 C 0.27 13.82 2.21 44.24 0.10 13.92 16 10 H 0.05 2.66 7.58 -2.39 -0.02 2.65 16 11 N -0.72 -29.79 4.99 -461.42 -2.30 -32.09 16 12 C 0.69 28.39 8.10 179.05 1.45 29.84 16 13 O -0.63 -32.17 14.92 -3.98 -0.06 -32.23 16 14 N -0.73 -20.99 5.56 -478.52 -2.66 -23.65 16 15 C 0.15 3.81 5.50 86.38 0.47 4.28 16 16 C -0.12 -1.97 3.75 -10.27 -0.04 -2.00 16 17 C -0.14 -2.07 7.65 31.18 0.24 -1.83 16 18 C -0.13 -1.64 8.09 31.18 0.25 -1.39 16 19 C -0.13 -1.89 7.65 31.12 0.24 -1.65 16 20 C 0.41 21.89 2.81 71.98 0.20 22.09 16 21 F -0.15 -8.68 12.91 44.97 0.58 -8.10 16 22 F -0.22 -11.75 15.67 44.97 0.70 -11.05 16 23 F -0.20 -10.10 16.94 44.97 0.76 -9.34 16 24 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 25 H 0.41 13.97 8.55 -92.70 -0.79 13.18 16 26 H 0.41 8.82 8.49 -92.71 -0.79 8.03 16 27 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.05 1.46 7.87 -2.39 -0.02 1.44 16 29 H 0.11 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.27 7.92 -2.39 -0.02 1.25 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 Total: -1.00 -67.29 304.16 2.38 -64.90 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.44 Total: 21.64 kcal Atomic # 6 Polarization: 32.60 SS G_CDS: 3.57 Total: 36.17 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -4.76 Total: -104.58 kcal Atomic # 8 Polarization: -32.17 SS G_CDS: -0.06 Total: -32.23 kcal Atomic # 9 Polarization: -30.54 SS G_CDS: 2.05 Total: -28.50 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -67.29 2.38 -64.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932921172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.501 kcal (2) G-P(sol) polarization free energy of solvation -67.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds