Wall clock time and date at job start Tue Mar 31 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46509 * 109.46686 * 2 1 4 4 C 1.34772 * 119.99618 * 61.76562 * 3 2 1 5 5 O 1.21594 * 120.00517 * 4.94623 * 4 3 2 6 6 N 1.34777 * 119.99962 * 184.95718 * 4 3 2 7 7 C 1.46501 * 120.00273 * 179.97438 * 6 4 3 8 8 C 1.50695 * 109.47268 * 179.97438 * 7 6 4 9 9 H 1.07997 * 119.99886 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00042 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00125 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00075 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47426 * 89.99676 * 12 10 8 14 14 H 1.48510 * 109.47093 * 209.99774 * 12 10 8 15 15 H 1.48501 * 109.46934 * 329.99436 * 12 10 8 16 16 C 1.52992 * 109.47343 * 120.00314 * 2 1 3 17 17 C 1.53003 * 117.49807 * 65.00252 * 16 2 1 18 18 C 1.53001 * 117.49955 * 356.37777 * 16 2 1 19 19 C 1.53000 * 109.47122 * 240.00862 * 2 1 3 20 20 F 1.39906 * 109.47166 * 305.87432 * 19 2 1 21 21 F 1.39905 * 109.47565 * 65.87449 * 19 2 1 22 22 F 1.39902 * 109.47016 * 185.87595 * 19 2 1 23 23 H 1.09000 * 109.46847 * 299.99453 * 1 2 3 24 24 H 1.09001 * 109.46793 * 59.99761 * 1 2 3 25 25 H 1.08999 * 109.46477 * 179.97438 * 1 2 3 26 26 H 0.96996 * 120.00097 * 241.75882 * 3 2 1 27 27 H 0.97004 * 119.99959 * 359.97438 * 6 4 3 28 28 H 1.09000 * 109.47336 * 300.00082 * 7 6 4 29 29 H 1.09005 * 109.47091 * 59.99770 * 7 6 4 30 30 H 0.97000 * 120.00481 * 180.02562 * 11 10 8 31 31 H 1.09004 * 115.55787 * 210.69159 * 16 2 1 32 32 H 1.09004 * 117.49488 * 145.02364 * 17 16 2 33 33 H 1.08994 * 117.49615 * 359.97438 * 17 16 2 34 34 H 1.09000 * 117.49749 * 0.02562 * 18 16 2 35 35 H 1.08997 * 117.52196 * 214.97150 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7222 2.2006 1.0283 5 8 1.1274 1.7697 1.9973 6 7 2.0854 3.4978 0.9826 7 6 1.7631 4.3885 2.1001 8 6 2.2756 5.7740 1.8022 9 1 2.7896 5.9713 0.8731 10 6 2.0883 6.7896 2.7157 11 7 1.4619 6.5493 3.8468 12 14 2.7230 8.5071 2.3460 13 1 1.6707 9.2827 1.6415 14 1 3.0733 9.1897 3.6176 15 1 3.9295 8.4143 1.4853 16 6 2.0401 -0.7213 1.2491 17 6 1.7349 -2.2151 1.3764 18 6 0.9986 -1.2059 2.2598 19 6 2.0401 -0.7211 -1.2493 20 9 1.4667 -1.9954 -1.3191 21 9 1.6872 0.0119 -2.3876 22 9 3.4325 -0.8392 -1.1838 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 2.5547 1.7061 -0.7400 27 1 2.5601 3.8416 0.2097 28 1 0.6823 4.4224 2.2379 29 1 2.2337 4.0152 3.0098 30 1 1.3298 7.2639 4.4894 31 1 2.9941 -0.3673 1.6399 32 1 2.4882 -2.8440 1.8511 33 1 1.1704 -2.6839 0.5704 34 1 -0.0499 -1.0112 2.0346 35 1 1.2672 -1.1711 3.3156 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933578734.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:17:47 Heat of formation + Delta-G solvation = -173.481602 kcal Electronic energy + Delta-G solvation = -23085.199639 eV Core-core repulsion = 19089.631347 eV Total energy + Delta-G solvation = -3995.568293 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.27507 -48.76557 -48.69789 -41.36613 -39.01348 -36.12356 -35.54863 -34.31165 -31.65864 -28.98584 -27.84682 -25.05071 -24.38799 -23.26140 -22.36955 -20.85493 -19.77541 -19.57583 -19.50707 -18.77948 -17.78438 -17.44423 -16.79873 -16.47637 -15.90852 -15.70030 -15.50645 -15.41428 -15.13579 -14.95302 -14.88115 -14.81794 -14.68693 -14.10155 -13.99901 -13.58391 -13.19364 -13.07189 -12.87030 -12.71844 -12.52131 -12.21089 -12.02616 -11.51619 -11.45344 -11.30306 -10.82477 -10.77591 -10.37388 -9.66753 -8.27043 -6.42585 1.29218 1.45080 1.46651 1.57528 1.68311 2.21196 2.39314 2.44640 2.88335 2.94030 3.08444 3.09104 3.42645 3.62292 3.70719 3.99975 4.15521 4.29245 4.50426 4.63869 4.79395 4.99448 5.03237 5.09872 5.19796 5.24990 5.29835 5.31851 5.49830 5.66852 5.86969 6.11633 6.68910 7.22226 7.27961 7.70426 8.84967 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.030422 B = 0.004218 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.171810 B = 6636.313319 C = 7144.657213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 N -0.732 5.732 4 C 0.703 3.297 5 O -0.611 6.611 6 N -0.723 5.723 7 C 0.289 3.711 8 C -0.555 4.555 9 H 0.081 0.919 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.982 3.018 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.258 1.258 16 C -0.177 4.177 17 C -0.162 4.162 18 C -0.151 4.151 19 C 0.465 3.535 20 F -0.163 7.163 21 F -0.177 7.177 22 F -0.176 7.176 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.409 0.591 27 H 0.402 0.598 28 H -0.011 1.011 29 H -0.012 1.012 30 H 0.268 0.732 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -16.330 -11.860 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.102 3.898 3 N -0.391 5.391 4 C 0.403 3.597 5 O -0.491 6.491 6 N -0.377 5.377 7 C 0.166 3.834 8 C -0.593 4.593 9 H 0.099 0.901 10 C -0.193 4.193 11 N -0.568 5.568 12 Si 0.805 3.195 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.181 1.181 16 C -0.196 4.196 17 C -0.199 4.199 18 C -0.188 4.188 19 C 0.410 3.590 20 F -0.144 7.144 21 F -0.158 7.158 22 F -0.157 7.157 23 H 0.097 0.903 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.245 0.755 27 H 0.237 0.763 28 H 0.007 0.993 29 H 0.006 0.994 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.121 0.879 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.704 -16.621 -10.837 19.855 hybrid contribution 0.779 1.256 -0.490 1.557 sum 1.483 -15.365 -11.327 19.147 Atomic orbital electron populations 1.22400 0.90821 1.04829 1.04595 1.20579 0.96864 0.81605 0.90790 1.44782 1.59497 1.10251 1.24563 1.15955 0.79777 0.81329 0.82680 1.90866 1.48051 1.75934 1.34224 1.45347 1.61443 1.07295 1.23608 1.18391 0.93845 0.87467 0.83678 1.21605 1.38599 0.93804 1.05297 0.90095 1.25986 0.94900 1.04097 0.94314 1.70126 1.42186 1.34911 1.09572 0.85198 0.78988 0.77558 0.77713 1.19668 1.20999 1.18144 1.22308 1.01571 0.97839 0.97879 1.23450 1.03594 0.89683 1.03221 1.22949 0.97776 1.01777 0.96312 1.20277 0.75754 0.78093 0.84840 1.93145 1.84445 1.40486 1.96356 1.93207 1.91711 1.77043 1.53879 1.93210 1.30085 1.95965 1.96471 0.90296 0.90732 0.88333 0.75470 0.76277 0.99255 0.99410 0.92280 0.88559 0.87041 0.86361 0.87874 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 6.75 71.98 0.49 -3.59 16 2 C 0.19 4.78 0.48 3.60 0.00 4.79 16 3 N -0.73 -20.91 4.99 -437.99 -2.19 -23.09 16 4 C 0.70 27.33 7.97 179.06 1.43 28.75 16 5 O -0.61 -27.93 13.07 -4.01 -0.05 -27.98 16 6 N -0.72 -30.06 5.55 -482.29 -2.68 -32.74 16 7 C 0.29 15.54 5.43 85.63 0.46 16.01 16 8 C -0.56 -29.79 9.28 25.60 0.24 -29.56 16 9 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 10 C 0.01 0.37 5.46 84.65 0.46 0.83 16 11 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 12 Si 0.98 41.98 29.54 68.60 2.03 44.01 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 14 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 16 C -0.18 -4.62 3.69 -10.79 -0.04 -4.66 16 17 C -0.16 -3.20 9.22 30.60 0.28 -2.92 16 18 C -0.15 -3.83 8.80 30.60 0.27 -3.56 16 19 C 0.47 9.95 2.16 71.98 0.16 10.11 16 20 F -0.16 -3.12 13.81 44.97 0.62 -2.50 16 21 F -0.18 -3.75 16.62 44.97 0.75 -3.00 16 22 F -0.18 -3.92 16.87 44.97 0.76 -3.16 16 23 H 0.08 2.41 5.56 -2.39 -0.01 2.40 16 24 H 0.07 1.68 7.96 -2.39 -0.02 1.66 16 25 H 0.10 1.86 6.70 -2.39 -0.02 1.85 16 26 H 0.41 9.60 8.24 -92.71 -0.76 8.84 16 27 H 0.40 14.04 8.34 -92.71 -0.77 13.27 16 28 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 32 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.12 2.00 5.81 -2.39 -0.01 1.99 16 34 H 0.10 2.59 5.82 -2.39 -0.01 2.57 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -65.37 299.34 2.88 -62.48 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.38 Total: 24.84 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 3.75 Total: 16.21 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.58 Total: -110.89 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 9 Polarization: -10.79 SS G_CDS: 2.13 Total: -8.67 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -65.37 2.88 -62.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933578734.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.999 kcal (2) G-P(sol) polarization free energy of solvation -65.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds