Wall clock time and date at job start Tue Mar 31 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 H 1.09008 * 111.00422 * 81.04917 * 11 10 9 13 13 C 1.52999 * 111.00368 * 204.85960 * 11 10 9 14 14 N 1.46494 * 109.47358 * 293.54522 * 13 11 10 15 15 C 1.34776 * 120.00390 * 179.97438 * 14 13 11 16 16 O 1.21700 * 119.99765 * 0.02562 * 15 14 13 17 17 C 1.46652 * 120.00553 * 179.97438 * 15 14 13 18 18 C 1.36539 * 125.99084 * 180.02562 * 17 15 14 19 19 C 1.40368 * 106.70987 * 179.97438 * 18 17 15 20 20 C 1.35126 * 107.11340 * 359.97438 * 19 18 17 21 21 O 1.33937 * 108.76911 * 359.77637 * 20 19 18 22 22 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 23 23 H 1.08994 * 110.71922 * 276.96131 * 22 11 10 24 24 O 1.42903 * 110.72170 * 153.86558 * 22 11 10 25 25 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 26 26 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 28 28 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 29 29 H 1.08994 * 109.47238 * 53.55041 * 13 11 10 30 30 H 1.09004 * 109.46626 * 173.54596 * 13 11 10 31 31 H 0.97004 * 119.99769 * 0.02562 * 14 13 11 32 32 H 1.07997 * 126.64809 * 0.02562 * 18 17 15 33 33 H 1.08000 * 126.43922 * 180.02562 * 19 18 17 34 34 H 1.08003 * 125.61804 * 180.02562 * 20 19 18 35 35 H 0.96696 * 113.99847 * 179.97438 * 24 22 11 36 36 H 1.09004 * 109.85762 * 59.49821 * 25 9 7 37 37 H 1.08995 * 110.00297 * 298.42768 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9335 -3.7312 -0.0005 11 6 0.8538 -4.6579 -0.6131 12 1 0.8593 -4.5980 -1.7015 13 6 1.0416 -6.1025 -0.1454 14 7 2.2938 -6.6332 -0.6898 15 6 2.6693 -7.8965 -0.4080 16 8 1.9679 -8.5966 0.2983 17 6 3.9226 -8.4280 -0.9534 18 6 4.4183 -9.6836 -0.7483 19 6 5.6300 -9.7592 -1.4528 20 6 5.8181 -8.5618 -2.0500 21 8 4.7846 -7.7640 -1.7511 22 6 -0.4478 -4.0487 -0.0283 23 1 -0.6321 -4.4259 0.9775 24 8 -1.5616 -4.3222 -0.8808 25 6 -0.1397 -2.5367 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 2.1668 -4.0420 1.0178 28 1 2.8339 -3.7400 -0.6148 29 1 1.0783 -6.1300 0.9436 30 1 0.2068 -6.7093 -0.4962 31 1 2.8531 -6.0750 -1.2525 32 1 3.9655 -10.4671 -0.1589 33 1 6.2878 -10.6140 -1.5079 34 1 6.6609 -8.2936 -2.6699 35 1 -2.4000 -3.9631 -0.5599 36 1 -0.5607 -2.0564 -0.8839 37 1 -0.5599 -2.0893 0.9002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957784145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:00 Heat of formation + Delta-G solvation = -41.571093 kcal Electronic energy + Delta-G solvation = -21534.737620 eV Core-core repulsion = 18086.746136 eV Total energy + Delta-G solvation = -3447.991484 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.85380 -39.56328 -38.18919 -35.24349 -34.72376 -33.27216 -32.27799 -30.54881 -29.36204 -27.58213 -25.69208 -24.06232 -22.62225 -21.91296 -20.68193 -20.20755 -19.90123 -18.56446 -16.98376 -16.80361 -16.51703 -16.36682 -15.80299 -15.21178 -14.86039 -14.30976 -14.11240 -13.74834 -13.28137 -13.20317 -13.16331 -12.89223 -12.67345 -12.44509 -12.04631 -11.50059 -11.25092 -11.01610 -10.83912 -10.61985 -10.42109 -10.28416 -10.06512 -9.84548 -9.83773 -9.25812 -9.17512 -8.81841 -8.68314 -6.92489 -5.77887 -3.12337 0.90429 2.14657 2.51958 3.10965 3.17996 3.36844 3.41777 3.43763 4.41475 4.50741 4.67815 4.70490 4.81669 4.99877 5.17866 5.40120 5.41461 5.47550 5.54125 5.63685 5.67926 5.82415 5.96548 6.00753 6.09007 6.17896 6.28909 6.36066 6.49648 6.63657 6.79321 7.36290 7.43650 7.46875 7.72184 8.03053 8.16166 8.17576 9.13250 9.74030 10.38488 11.33970 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.003902 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.067377 B = 7174.910980 C = 8269.819223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.141 3.859 11 C -0.109 4.109 12 H 0.091 0.909 13 C 0.132 3.868 14 N -0.711 5.711 15 C 0.600 3.400 16 O -0.525 6.525 17 C -0.074 4.074 18 C -0.125 4.125 19 C -0.227 4.227 20 C -0.008 4.008 21 O -0.162 6.162 22 C 0.084 3.916 23 H 0.058 0.942 24 O -0.567 6.567 25 C 0.151 3.849 26 H 0.253 0.747 27 H 0.024 0.976 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.408 0.592 32 H 0.160 0.840 33 H 0.156 0.844 34 H 0.210 0.790 35 H 0.376 0.624 36 H 0.058 0.942 37 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.177 -16.160 -3.140 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.128 4.128 12 H 0.109 0.891 13 C 0.009 3.991 14 N -0.361 5.361 15 C 0.385 3.615 16 O -0.404 6.404 17 C -0.126 4.126 18 C -0.146 4.146 19 C -0.246 4.246 20 C -0.078 4.078 21 O -0.057 6.057 22 C 0.024 3.976 23 H 0.075 0.925 24 O -0.372 6.372 25 C 0.026 3.974 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.243 0.757 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.223 0.777 36 H 0.076 0.924 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.993 -16.378 -3.059 18.069 hybrid contribution 0.476 1.282 0.059 1.369 sum 7.468 -15.096 -3.000 17.107 Atomic orbital electron populations 1.69935 1.04942 1.25185 1.56903 1.24816 0.95756 0.97778 1.02013 0.86087 0.78583 0.83288 0.77607 1.21528 1.21625 1.20640 1.19071 0.90467 0.82220 1.44133 0.90230 1.44359 1.01288 0.99912 1.87386 1.21611 0.94075 0.85818 0.97078 1.22619 0.96281 0.92157 1.01784 0.89118 1.21467 0.84887 0.93906 0.98838 1.45964 1.24895 1.13185 1.52052 1.16550 0.82469 0.82046 0.80401 1.90878 1.52650 1.58655 1.38185 1.22188 0.94707 0.93688 1.02018 1.21971 0.95556 0.96271 1.00756 1.21860 0.99585 0.99636 1.03566 1.24429 0.91593 0.89950 1.01790 1.84097 1.27937 1.41060 1.52607 1.23115 0.85044 0.97880 0.91596 0.92455 1.86422 1.18835 1.80180 1.51716 1.21867 0.85182 0.88487 1.01858 0.93663 0.95862 0.93912 0.90964 0.90756 0.75725 0.82265 0.82651 0.77355 0.77677 0.92368 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.65 10.33 55.49 0.57 -26.08 16 2 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 9 N -0.60 -15.06 3.40 -169.86 -0.58 -15.64 16 10 C 0.14 2.79 6.40 -2.53 -0.02 2.77 16 11 C -0.11 -1.87 2.83 -88.47 -0.25 -2.12 16 12 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 13 C 0.13 1.99 5.12 -4.05 -0.02 1.97 16 14 N -0.71 -9.88 5.40 -61.63 -0.33 -10.21 16 15 C 0.60 8.84 7.79 -12.87 -0.10 8.74 16 16 O -0.53 -9.16 16.87 5.19 0.09 -9.07 16 17 C -0.07 -0.94 7.13 -36.80 -0.26 -1.20 16 18 C -0.12 -1.38 10.62 -39.39 -0.42 -1.79 16 19 C -0.23 -1.92 10.87 -39.89 -0.43 -2.36 16 20 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 21 O -0.16 -1.81 10.40 4.97 0.05 -1.76 16 22 C 0.08 1.54 3.80 -24.90 -0.09 1.45 16 23 H 0.06 0.98 8.04 -51.93 -0.42 0.56 16 24 O -0.57 -9.75 13.39 -35.23 -0.47 -10.22 16 25 C 0.15 3.57 5.16 -2.92 -0.02 3.56 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.02 0.46 8.00 -51.93 -0.42 0.05 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.11 8.10 -51.93 -0.42 0.69 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.41 5.14 8.09 -40.82 -0.33 4.81 16 32 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.21 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.38 5.00 9.12 45.56 0.42 5.42 16 36 H 0.06 1.55 7.31 -51.93 -0.38 1.17 16 37 H 0.05 1.19 7.51 -51.93 -0.39 0.80 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -33.33 319.14 -6.41 -39.74 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.02 Total: 7.13 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -1.50 Total: 4.52 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.34 Total: -51.93 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.33 Total: -21.05 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.33 -6.41 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957784145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.829 kcal (2) G-P(sol) polarization free energy of solvation -33.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds