Wall clock time and date at job start Tue Mar 31 2020 01:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48496 * 109.47294 * 270.00352 * 3 2 1 5 5 H 1.48503 * 109.46797 * 30.00268 * 3 2 1 6 6 H 1.48500 * 109.47035 * 150.00068 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 11 11 C 1.54908 * 104.92961 * 204.15650 * 10 9 7 12 12 H 1.09008 * 111.00422 * 81.04917 * 11 10 9 13 13 C 1.52999 * 111.00368 * 204.85960 * 11 10 9 14 14 N 1.46494 * 109.47358 * 293.54522 * 13 11 10 15 15 C 1.34776 * 120.00390 * 179.97438 * 14 13 11 16 16 O 1.21700 * 119.99765 * 0.02562 * 15 14 13 17 17 C 1.46652 * 120.00553 * 179.97438 * 15 14 13 18 18 C 1.36539 * 125.99084 * 180.02562 * 17 15 14 19 19 C 1.40368 * 106.70987 * 179.97438 * 18 17 15 20 20 C 1.35126 * 107.11340 * 359.97438 * 19 18 17 21 21 O 1.33937 * 108.76911 * 359.77637 * 20 19 18 22 22 C 1.55154 * 101.58289 * 322.93718 * 11 10 9 23 23 H 1.08994 * 110.71922 * 276.96131 * 22 11 10 24 24 O 1.42903 * 110.72170 * 153.86558 * 22 11 10 25 25 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 26 26 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.09002 * 110.36696 * 85.26297 * 10 9 7 28 28 H 1.08995 * 110.36608 * 323.05133 * 10 9 7 29 29 H 1.08994 * 109.47238 * 53.55041 * 13 11 10 30 30 H 1.09004 * 109.46626 * 173.54596 * 13 11 10 31 31 H 0.97004 * 119.99769 * 0.02562 * 14 13 11 32 32 H 1.07997 * 126.64809 * 0.02562 * 18 17 15 33 33 H 1.08000 * 126.43922 * 180.02562 * 19 18 17 34 34 H 1.08003 * 125.61804 * 180.02562 * 20 19 18 35 35 H 0.96696 * 113.99847 * 179.97438 * 24 22 11 36 36 H 1.09004 * 109.85762 * 59.49821 * 25 9 7 37 37 H 1.08995 * 110.00297 * 298.42768 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 1.9335 -3.7312 -0.0005 11 6 0.8538 -4.6579 -0.6131 12 1 0.8593 -4.5980 -1.7015 13 6 1.0416 -6.1025 -0.1454 14 7 2.2938 -6.6332 -0.6898 15 6 2.6693 -7.8965 -0.4080 16 8 1.9679 -8.5966 0.2983 17 6 3.9226 -8.4280 -0.9534 18 6 4.4183 -9.6836 -0.7483 19 6 5.6300 -9.7592 -1.4528 20 6 5.8181 -8.5618 -2.0500 21 8 4.7846 -7.7640 -1.7511 22 6 -0.4478 -4.0487 -0.0283 23 1 -0.6321 -4.4259 0.9775 24 8 -1.5616 -4.3222 -0.8808 25 6 -0.1397 -2.5367 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 2.1668 -4.0420 1.0178 28 1 2.8339 -3.7400 -0.6148 29 1 1.0783 -6.1300 0.9436 30 1 0.2068 -6.7093 -0.4962 31 1 2.8531 -6.0750 -1.2525 32 1 3.9655 -10.4671 -0.1589 33 1 6.2878 -10.6140 -1.5079 34 1 6.6609 -8.2936 -2.6699 35 1 -2.4000 -3.9631 -0.5599 36 1 -0.5607 -2.0564 -0.8839 37 1 -0.5599 -2.0893 0.9002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957784145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:59 Heat of formation + Delta-G solvation = -67.936079 kcal Electronic energy + Delta-G solvation = -21535.880891 eV Core-core repulsion = 18086.746136 eV Total energy + Delta-G solvation = -3449.134755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.62128 -40.77483 -39.70685 -36.66942 -36.21672 -34.17958 -33.91454 -31.87063 -30.62397 -29.26280 -27.32353 -25.57490 -23.76594 -22.67290 -22.23712 -21.60629 -21.12210 -19.60206 -18.83936 -18.23754 -17.39979 -17.29789 -17.16895 -16.69507 -16.25769 -15.75360 -15.70439 -15.06544 -14.69119 -14.42502 -14.16948 -13.97739 -13.90841 -13.70099 -13.52840 -13.22900 -13.10742 -12.73639 -12.48732 -12.30309 -11.93926 -11.80348 -11.66160 -11.33818 -11.03119 -10.84057 -10.74187 -10.31847 -9.63134 -8.94835 -7.87320 -5.23887 0.03572 1.44702 1.46540 1.48205 1.56847 1.67446 2.09000 2.18364 2.47637 3.22240 3.33164 3.54038 3.62519 3.79612 3.86786 3.98040 4.12535 4.13558 4.38332 4.43180 4.57975 4.63810 4.70540 4.84338 4.92284 4.93102 4.97483 5.16737 5.30297 5.40633 5.42317 5.47286 5.69795 5.85365 6.15058 6.38252 6.88490 6.94254 7.05799 7.72349 8.36268 9.23044 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.003902 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.067377 B = 7174.910980 C = 8269.819223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.268 1.268 7 C -0.245 4.245 8 H 0.087 0.913 9 N -0.625 5.625 10 C 0.139 3.861 11 C -0.091 4.091 12 H 0.086 0.914 13 C 0.145 3.855 14 N -0.707 5.707 15 C 0.600 3.400 16 O -0.561 6.561 17 C -0.111 4.111 18 C -0.124 4.124 19 C -0.233 4.233 20 C 0.009 3.991 21 O -0.174 6.174 22 C 0.098 3.902 23 H 0.078 0.922 24 O -0.570 6.570 25 C 0.160 3.840 26 H 0.247 0.753 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.414 0.586 32 H 0.161 0.839 33 H 0.186 0.814 34 H 0.254 0.746 35 H 0.394 0.606 36 H 0.020 0.980 37 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.299 -17.467 -3.805 20.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.259 4.259 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.373 4.373 8 H 0.105 0.895 9 N -0.352 5.352 10 C 0.014 3.986 11 C -0.110 4.110 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.357 5.357 15 C 0.388 3.612 16 O -0.442 6.442 17 C -0.163 4.163 18 C -0.144 4.144 19 C -0.252 4.252 20 C -0.060 4.060 21 O -0.069 6.069 22 C 0.038 3.962 23 H 0.096 0.904 24 O -0.377 6.377 25 C 0.034 3.966 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.179 0.821 33 H 0.203 0.797 34 H 0.269 0.731 35 H 0.243 0.757 36 H 0.038 0.962 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 9.131 -17.705 -3.733 20.268 hybrid contribution -0.098 1.624 0.219 1.642 sum 9.033 -16.081 -3.514 18.776 Atomic orbital electron populations 1.70156 1.06330 1.25365 1.58150 1.25671 0.96650 1.01115 1.02435 0.85056 0.77689 0.78966 0.77478 1.21264 1.22163 1.19225 1.19496 0.91141 0.83481 1.43210 0.89546 1.44665 1.02100 1.01223 1.87256 1.21765 0.95084 0.83971 0.97797 1.22414 0.94548 0.92893 1.01192 0.89594 1.21227 0.85650 0.92164 0.98782 1.45860 1.24523 1.13266 1.52029 1.16776 0.82947 0.81691 0.79784 1.90846 1.54064 1.59440 1.39897 1.21815 0.95175 0.94591 1.04672 1.22269 0.96363 0.95626 1.00181 1.22231 0.98957 1.00964 1.03047 1.25407 0.91042 0.89277 1.00314 1.84085 1.28560 1.41736 1.52568 1.22876 0.86105 0.94151 0.93067 0.90406 1.86391 1.19473 1.79976 1.51840 1.21647 0.84608 0.91800 0.98523 0.94361 0.95164 0.92761 0.90921 0.90572 0.74953 0.82149 0.79717 0.73055 0.75669 0.96172 0.96731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.65 10.33 21.65 0.22 -56.43 16 2 C -0.07 -3.70 5.49 84.86 0.47 -3.24 16 3 Si 0.98 45.22 29.55 68.60 2.03 47.24 16 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.24 -13.51 10.28 84.03 0.86 -12.65 16 8 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 9 N -0.63 -31.58 3.40 -691.30 -2.35 -33.93 16 10 C 0.14 5.40 6.40 86.85 0.56 5.95 16 11 C -0.09 -3.04 2.83 -9.40 -0.03 -3.07 16 12 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 13 C 0.15 4.20 5.12 86.38 0.44 4.64 16 14 N -0.71 -18.96 5.40 -467.12 -2.52 -21.48 16 15 C 0.60 17.40 7.79 86.44 0.67 18.07 16 16 O -0.56 -19.54 16.87 -4.35 -0.07 -19.62 16 17 C -0.11 -2.70 7.13 24.07 0.17 -2.52 16 18 C -0.12 -2.54 10.62 22.39 0.24 -2.30 16 19 C -0.23 -3.20 10.87 22.07 0.24 -2.96 16 20 C 0.01 0.11 12.08 67.10 0.81 0.92 16 21 O -0.17 -3.53 10.40 -5.12 -0.05 -3.59 16 22 C 0.10 3.58 3.80 31.78 0.12 3.70 16 23 H 0.08 2.56 8.04 -2.39 -0.02 2.54 16 24 O -0.57 -19.08 13.39 -148.98 -1.99 -21.07 16 25 C 0.16 7.75 5.16 86.68 0.45 8.20 16 26 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 27 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 30 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 31 H 0.41 9.97 8.09 -92.71 -0.75 9.22 16 32 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.25 0.65 8.06 -2.91 -0.02 0.63 16 35 H 0.39 10.13 9.12 -74.06 -0.68 9.46 16 36 H 0.02 1.11 7.31 -2.38 -0.02 1.10 16 37 H 0.01 0.78 7.51 -2.39 -0.02 0.76 16 Total: -1.00 -73.70 319.14 -0.06 -73.76 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -0.32 Total: 20.36 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.00 Total: 14.75 kcal Atomic # 7 Polarization: -107.18 SS G_CDS: -4.65 Total: -111.84 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -2.12 Total: -44.27 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -73.70 -0.06 -73.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957784145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.827 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds