Wall clock time and date at job start Tue Mar 31 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47059 * 274.98800 * 3 2 1 5 5 H 1.48501 * 109.47162 * 34.98670 * 3 2 1 6 6 H 1.48497 * 109.47246 * 154.98666 * 3 2 1 7 7 C 1.38809 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99843 * 186.83279 * 7 2 1 9 9 N 1.36932 * 120.00429 * 6.82358 * 7 2 1 10 10 C 1.47030 * 125.64558 * 353.95045 * 9 7 2 11 11 C 1.54323 * 107.27045 * 181.02171 * 10 9 7 12 12 H 1.09003 * 110.87241 * 263.75442 * 11 10 9 13 13 O 1.42894 * 110.72058 * 140.55407 * 11 10 9 14 14 C 1.55159 * 102.94390 * 22.19107 * 11 10 9 15 15 H 1.09000 * 111.00279 * 82.57240 * 14 11 10 16 16 C 1.53001 * 111.00484 * 206.42735 * 14 11 10 17 17 N 1.46496 * 109.47214 * 184.99782 * 16 14 11 18 18 C 1.34779 * 120.00280 * 179.97438 * 17 16 14 19 19 O 1.21693 * 119.99685 * 359.97438 * 18 17 16 20 20 C 1.46658 * 120.00349 * 180.02562 * 18 17 16 21 21 C 1.36540 * 125.98767 * 179.71858 * 20 18 17 22 22 C 1.40363 * 106.70618 * 179.85234 * 21 20 18 23 23 C 1.35138 * 107.11422 * 0.40588 * 22 21 20 24 24 O 1.33925 * 108.76826 * 359.74684 * 23 22 21 25 25 C 1.47423 * 125.65349 * 173.90167 * 9 7 2 26 26 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.88201 * 61.60074 * 10 9 7 28 28 H 1.09001 * 109.88036 * 300.43794 * 10 9 7 29 29 H 0.96700 * 114.00077 * 66.47774 * 13 11 10 30 30 H 1.09003 * 109.46952 * 304.99570 * 16 14 11 31 31 H 1.08999 * 109.47161 * 64.99514 * 16 14 11 32 32 H 0.96999 * 120.00023 * 0.02562 * 17 16 14 33 33 H 1.07995 * 126.64364 * 359.95777 * 21 20 18 34 34 H 1.07995 * 126.44666 * 180.15398 * 22 21 20 35 35 H 1.07992 * 125.61337 * 179.71214 * 23 22 21 36 36 H 1.08999 * 110.36197 * 37.07202 * 25 9 7 37 37 H 1.08999 * 110.37017 * 274.75102 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0846 -1.2054 0.1107 9 7 1.3329 -2.3838 -0.1420 10 6 -0.1292 -2.5346 -0.1757 11 6 -0.4311 -4.0408 -0.3231 12 1 -0.6024 -4.3022 -1.3674 13 8 -1.5533 -4.4124 0.4796 14 6 0.8663 -4.7086 0.2043 15 1 0.8586 -4.7718 1.2924 16 6 1.0655 -6.0903 -0.4218 17 7 2.2304 -6.7384 0.1857 18 6 2.5991 -7.9722 -0.2122 19 8 1.9639 -8.5481 -1.0758 20 6 3.7650 -8.6212 0.3963 21 6 4.2414 -9.8640 0.0917 22 6 5.3644 -10.0765 0.9065 23 6 5.5169 -8.9717 1.6696 24 8 4.5513 -8.0971 1.3593 25 6 1.9490 -3.7153 -0.2866 26 1 -0.4850 0.8400 0.0004 27 1 -0.5385 -1.9895 -1.0262 28 1 -0.5621 -2.1587 0.7513 29 1 -2.3896 -4.0213 0.1918 30 1 0.1786 -6.6996 -0.2472 31 1 1.2274 -5.9833 -1.4944 32 1 2.7361 -6.2798 0.8748 33 1 3.8342 -10.5498 -0.6364 34 1 5.9870 -10.9588 0.9235 35 1 6.2897 -8.8195 2.4084 36 1 2.8416 -3.7897 0.3346 37 1 2.1952 -3.9081 -1.3307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957784146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:03 Heat of formation + Delta-G solvation = -41.603788 kcal Electronic energy + Delta-G solvation = -21508.721490 eV Core-core repulsion = 18060.728589 eV Total energy + Delta-G solvation = -3447.992901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.85994 -39.56250 -38.19999 -35.23506 -34.74450 -33.27774 -32.29211 -30.55483 -29.36866 -27.58625 -25.68427 -24.05965 -22.61405 -21.91654 -20.66928 -20.26839 -19.89915 -18.55041 -16.99096 -16.80264 -16.52368 -16.37409 -15.82585 -15.18810 -14.86993 -14.30892 -14.09135 -13.74494 -13.27901 -13.20926 -13.17291 -12.89714 -12.67498 -12.45319 -12.05021 -11.53012 -11.24569 -11.01371 -10.84424 -10.62195 -10.43029 -10.28934 -10.06456 -9.87504 -9.81288 -9.25224 -9.18372 -8.82205 -8.65828 -6.91947 -5.79145 -3.12686 0.89941 2.14144 2.51378 3.10619 3.17652 3.36854 3.42095 3.44108 4.41525 4.50203 4.67338 4.70347 4.81368 5.00329 5.16297 5.40252 5.40981 5.47056 5.53666 5.63876 5.67908 5.82541 5.96861 6.01018 6.08524 6.18388 6.27455 6.36672 6.50478 6.63187 6.79601 7.37642 7.43208 7.46720 7.72397 8.02737 8.16412 8.17441 9.13288 9.74044 10.38728 11.32898 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.003804 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.768438 B = 7359.124579 C = 8350.630600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.058 0.942 13 O -0.567 6.567 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.132 3.868 17 N -0.711 5.711 18 C 0.600 3.400 19 O -0.525 6.525 20 C -0.074 4.074 21 C -0.125 4.125 22 C -0.227 4.227 23 C -0.008 4.008 24 O -0.162 6.162 25 C 0.141 3.859 26 H 0.253 0.747 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.376 0.624 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.407 0.593 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.210 0.790 36 H 0.043 0.957 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 -16.816 2.239 18.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.360 4.360 8 H 0.098 0.902 9 N -0.330 5.330 10 C 0.026 3.974 11 C 0.023 3.977 12 H 0.076 0.924 13 O -0.372 6.372 14 C -0.128 4.128 15 H 0.109 0.891 16 C 0.009 3.991 17 N -0.361 5.361 18 C 0.385 3.615 19 O -0.403 6.403 20 C -0.126 4.126 21 C -0.145 4.145 22 C -0.246 4.246 23 C -0.078 4.078 24 O -0.057 6.057 25 C 0.015 3.985 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.223 0.777 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.242 0.758 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.226 0.774 36 H 0.061 0.939 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.566 -16.994 2.075 18.336 hybrid contribution 0.440 1.264 0.028 1.339 sum 7.006 -15.730 2.104 17.348 Atomic orbital electron populations 1.69954 1.04977 1.25194 1.56614 1.24833 0.95734 0.97782 1.01912 0.86089 0.78682 0.83405 0.77535 1.21548 1.21719 1.20572 1.19077 0.91141 0.82379 1.43413 0.90231 1.44307 1.01280 1.01184 1.86190 1.21837 0.85303 0.88503 1.01769 1.23118 0.84895 0.97151 0.92498 0.92430 1.86418 1.18531 1.74127 1.58106 1.22622 0.96272 0.92530 1.01407 0.89137 1.21480 0.87238 0.92771 0.97652 1.45968 1.31714 1.16580 1.41828 1.16550 0.81663 0.81364 0.81892 1.90877 1.53404 1.64565 1.31494 1.22194 0.97493 0.96112 0.96804 1.21971 0.96141 0.95535 1.00902 1.21862 1.01067 1.01061 1.00650 1.24427 0.92932 0.88889 1.01533 1.84093 1.34057 1.42312 1.45247 1.21630 0.93974 0.85454 0.97486 0.93664 0.93290 0.92739 0.77671 0.90752 0.90895 0.75762 0.82260 0.82651 0.77358 0.93903 0.95784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.36 55.49 0.58 -26.01 16 2 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.81 29.56 -169.99 -5.02 16.78 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.37 10.26 -15.06 -0.15 -6.53 16 8 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 9 N -0.60 -15.07 3.39 -170.07 -0.58 -15.64 16 10 C 0.15 3.57 5.15 -3.06 -0.02 3.55 16 11 C 0.08 1.54 3.80 -24.90 -0.09 1.44 16 12 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 13 O -0.57 -9.74 13.39 -35.23 -0.47 -10.22 16 14 C -0.11 -1.87 2.77 -88.47 -0.25 -2.11 16 15 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 16 C 0.13 1.98 5.13 -4.04 -0.02 1.96 16 17 N -0.71 -9.83 5.50 -61.63 -0.34 -10.17 16 18 C 0.60 8.81 7.79 -12.86 -0.10 8.71 16 19 O -0.52 -9.14 16.86 5.20 0.09 -9.06 16 20 C -0.07 -0.93 7.13 -36.80 -0.26 -1.19 16 21 C -0.12 -1.37 10.62 -39.40 -0.42 -1.79 16 22 C -0.23 -1.91 10.88 -39.89 -0.43 -2.34 16 23 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 24 O -0.16 -1.80 10.40 5.00 0.05 -1.75 16 25 C 0.14 2.80 6.65 -2.53 -0.02 2.78 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.05 1.27 7.37 -51.93 -0.38 0.88 16 28 H 0.05 1.45 7.46 -51.93 -0.39 1.06 16 29 H 0.38 5.00 9.12 45.56 0.42 5.42 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 1.12 7.96 -51.93 -0.41 0.70 16 32 H 0.41 5.08 8.23 -40.82 -0.34 4.75 16 33 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 34 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.02 0.48 7.91 -51.93 -0.41 0.07 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -33.34 319.35 -6.40 -39.74 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.01 Total: 7.00 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.50 Total: 4.51 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.34 Total: -51.82 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.33 Total: -21.02 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.34 -6.40 -39.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957784146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.868 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds