Wall clock time and date at job start Tue Mar 31 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47059 * 274.98800 * 3 2 1 5 5 H 1.48501 * 109.47162 * 34.98670 * 3 2 1 6 6 H 1.48497 * 109.47246 * 154.98666 * 3 2 1 7 7 C 1.38809 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99843 * 186.83279 * 7 2 1 9 9 N 1.36932 * 120.00429 * 6.82358 * 7 2 1 10 10 C 1.47030 * 125.64558 * 353.95045 * 9 7 2 11 11 C 1.54323 * 107.27045 * 181.02171 * 10 9 7 12 12 H 1.09003 * 110.87241 * 263.75442 * 11 10 9 13 13 O 1.42894 * 110.72058 * 140.55407 * 11 10 9 14 14 C 1.55159 * 102.94390 * 22.19107 * 11 10 9 15 15 H 1.09000 * 111.00279 * 82.57240 * 14 11 10 16 16 C 1.53001 * 111.00484 * 206.42735 * 14 11 10 17 17 N 1.46496 * 109.47214 * 184.99782 * 16 14 11 18 18 C 1.34779 * 120.00280 * 179.97438 * 17 16 14 19 19 O 1.21693 * 119.99685 * 359.97438 * 18 17 16 20 20 C 1.46658 * 120.00349 * 180.02562 * 18 17 16 21 21 C 1.36540 * 125.98767 * 179.71858 * 20 18 17 22 22 C 1.40363 * 106.70618 * 179.85234 * 21 20 18 23 23 C 1.35138 * 107.11422 * 0.40588 * 22 21 20 24 24 O 1.33925 * 108.76826 * 359.74684 * 23 22 21 25 25 C 1.47423 * 125.65349 * 173.90167 * 9 7 2 26 26 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.88201 * 61.60074 * 10 9 7 28 28 H 1.09001 * 109.88036 * 300.43794 * 10 9 7 29 29 H 0.96700 * 114.00077 * 66.47774 * 13 11 10 30 30 H 1.09003 * 109.46952 * 304.99570 * 16 14 11 31 31 H 1.08999 * 109.47161 * 64.99514 * 16 14 11 32 32 H 0.96999 * 120.00023 * 0.02562 * 17 16 14 33 33 H 1.07995 * 126.64364 * 359.95777 * 21 20 18 34 34 H 1.07995 * 126.44666 * 180.15398 * 22 21 20 35 35 H 1.07992 * 125.61337 * 179.71214 * 23 22 21 36 36 H 1.08999 * 110.36197 * 37.07202 * 25 9 7 37 37 H 1.08999 * 110.37017 * 274.75102 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0846 -1.2054 0.1107 9 7 1.3329 -2.3838 -0.1420 10 6 -0.1292 -2.5346 -0.1757 11 6 -0.4311 -4.0408 -0.3231 12 1 -0.6024 -4.3022 -1.3674 13 8 -1.5533 -4.4124 0.4796 14 6 0.8663 -4.7086 0.2043 15 1 0.8586 -4.7718 1.2924 16 6 1.0655 -6.0903 -0.4218 17 7 2.2304 -6.7384 0.1857 18 6 2.5991 -7.9722 -0.2122 19 8 1.9639 -8.5481 -1.0758 20 6 3.7650 -8.6212 0.3963 21 6 4.2414 -9.8640 0.0917 22 6 5.3644 -10.0765 0.9065 23 6 5.5169 -8.9717 1.6696 24 8 4.5513 -8.0971 1.3593 25 6 1.9490 -3.7153 -0.2866 26 1 -0.4850 0.8400 0.0004 27 1 -0.5385 -1.9895 -1.0262 28 1 -0.5621 -2.1587 0.7513 29 1 -2.3896 -4.0213 0.1918 30 1 0.1786 -6.6996 -0.2472 31 1 1.2274 -5.9833 -1.4944 32 1 2.7361 -6.2798 0.8748 33 1 3.8342 -10.5498 -0.6364 34 1 5.9870 -10.9588 0.9235 35 1 6.2897 -8.8195 2.4084 36 1 2.8416 -3.7897 0.3346 37 1 2.1952 -3.9081 -1.3307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957784146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:02 Heat of formation + Delta-G solvation = -68.010225 kcal Electronic energy + Delta-G solvation = -21509.866559 eV Core-core repulsion = 18060.728589 eV Total energy + Delta-G solvation = -3449.137970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.62242 -40.77061 -39.71899 -36.66712 -36.22457 -34.18849 -33.92265 -31.87607 -30.62584 -29.27032 -27.31111 -25.57554 -23.74457 -22.67197 -22.23029 -21.67440 -21.10318 -19.58586 -18.85227 -18.23643 -17.39974 -17.29818 -17.19616 -16.69009 -16.22446 -15.75201 -15.71082 -15.05802 -14.67961 -14.41991 -14.17573 -13.99355 -13.91100 -13.70627 -13.52974 -13.25667 -13.11217 -12.75121 -12.47773 -12.29517 -11.95170 -11.80118 -11.66841 -11.33379 -11.03192 -10.84321 -10.72045 -10.31737 -9.63114 -8.94272 -7.88648 -5.24287 0.03552 1.44636 1.46300 1.48038 1.56816 1.67353 2.09006 2.18490 2.47317 3.21417 3.33713 3.53981 3.61770 3.78728 3.87530 3.97968 4.13166 4.13601 4.38448 4.43315 4.58329 4.63959 4.71828 4.84675 4.91633 4.92831 4.97448 5.16095 5.31299 5.42100 5.42978 5.46578 5.69147 5.85306 6.15270 6.38378 6.88325 6.94390 7.05866 7.72412 8.36362 9.21980 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022029 B = 0.003804 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.768438 B = 7359.124579 C = 8350.630600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.246 4.246 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.160 3.840 11 C 0.098 3.902 12 H 0.078 0.922 13 O -0.570 6.570 14 C -0.090 4.090 15 H 0.086 0.914 16 C 0.145 3.855 17 N -0.707 5.707 18 C 0.600 3.400 19 O -0.561 6.561 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.234 4.234 23 C 0.009 3.991 24 O -0.174 6.174 25 C 0.139 3.861 26 H 0.248 0.752 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.394 0.606 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.414 0.586 33 H 0.161 0.839 34 H 0.185 0.815 35 H 0.254 0.746 36 H 0.054 0.946 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.726 -18.249 2.896 20.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.257 4.257 3 Si 0.807 3.193 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.375 4.375 8 H 0.104 0.896 9 N -0.352 5.352 10 C 0.034 3.966 11 C 0.038 3.962 12 H 0.096 0.904 13 O -0.377 6.377 14 C -0.110 4.110 15 H 0.105 0.895 16 C 0.021 3.979 17 N -0.357 5.357 18 C 0.388 3.612 19 O -0.443 6.443 20 C -0.162 4.162 21 C -0.145 4.145 22 C -0.252 4.252 23 C -0.060 4.060 24 O -0.069 6.069 25 C 0.014 3.986 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.243 0.757 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.251 0.749 33 H 0.178 0.822 34 H 0.203 0.797 35 H 0.270 0.730 36 H 0.072 0.928 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.605 -18.447 2.743 20.539 hybrid contribution -0.110 1.637 -0.118 1.645 sum 8.495 -16.810 2.625 19.017 Atomic orbital electron populations 1.70167 1.06351 1.25396 1.57864 1.25679 0.96623 1.01098 1.02335 0.85057 0.77919 0.79093 0.77255 1.21443 1.22209 1.19056 1.19491 0.91749 0.83648 1.42571 0.89613 1.44612 1.02104 1.02458 1.86060 1.21613 0.84706 0.91813 0.98449 1.22877 0.85974 0.93467 0.93908 0.90419 1.86387 1.19145 1.73928 1.58230 1.22415 0.94493 0.92968 1.01129 0.89527 1.21235 0.87920 0.91292 0.97420 1.45862 1.31361 1.16560 1.41873 1.16778 0.81955 0.81103 0.81371 1.90844 1.54874 1.65377 1.33161 1.21816 0.98400 0.97001 0.99030 1.22268 0.96627 0.94851 1.00705 1.22232 1.00535 1.02418 1.00028 1.25406 0.91950 0.87790 1.00882 1.84081 1.34664 1.43196 1.44986 1.21789 0.94969 0.83748 0.98100 0.94323 0.96442 0.96550 0.75668 0.90609 0.90870 0.74945 0.82163 0.79726 0.73043 0.92818 0.95082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.49 10.36 21.65 0.22 -56.27 16 2 C -0.06 -3.61 5.48 84.86 0.47 -3.15 16 3 Si 0.98 45.22 29.56 68.60 2.03 47.25 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.25 -13.60 10.26 84.03 0.86 -12.74 16 8 H 0.09 4.50 7.84 -2.91 -0.02 4.48 16 9 N -0.63 -31.58 3.39 -691.98 -2.35 -33.93 16 10 C 0.16 7.75 5.15 86.73 0.45 8.20 16 11 C 0.10 3.56 3.80 31.78 0.12 3.68 16 12 H 0.08 2.56 8.04 -2.39 -0.02 2.54 16 13 O -0.57 -19.05 13.39 -148.98 -1.99 -21.04 16 14 C -0.09 -3.02 2.77 -9.40 -0.03 -3.05 16 15 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 16 C 0.15 4.18 5.13 86.38 0.44 4.62 16 17 N -0.71 -18.86 5.50 -467.10 -2.57 -21.43 16 18 C 0.60 17.35 7.79 86.44 0.67 18.02 16 19 O -0.56 -19.54 16.86 -4.33 -0.07 -19.61 16 20 C -0.11 -2.68 7.13 24.07 0.17 -2.51 16 21 C -0.12 -2.53 10.62 22.39 0.24 -2.29 16 22 C -0.23 -3.18 10.88 22.07 0.24 -2.94 16 23 C 0.01 0.11 12.08 67.11 0.81 0.92 16 24 O -0.17 -3.50 10.40 -5.04 -0.05 -3.55 16 25 C 0.14 5.41 6.65 86.86 0.58 5.99 16 26 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.02 0.94 7.37 -2.39 -0.02 0.92 16 28 H 0.02 0.90 7.46 -2.39 -0.02 0.89 16 29 H 0.39 10.12 9.12 -74.06 -0.68 9.45 16 30 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16 32 H 0.41 9.85 8.23 -92.71 -0.76 9.09 16 33 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.19 1.33 8.06 -2.91 -0.02 1.30 16 35 H 0.25 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.03 1.19 7.91 -2.39 -0.02 1.18 16 Total: -1.00 -73.71 319.35 -0.09 -73.80 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.33 Total: 20.00 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.02 Total: 14.77 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -4.69 Total: -111.63 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: -2.12 Total: -44.20 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.71 -0.09 -73.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957784146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.794 kcal (2) G-P(sol) polarization free energy of solvation -73.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds