Wall clock time and date at job start Tue Mar 31 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00230 * 2 1 4 4 H 1.48504 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47341 * 299.99625 * 3 2 1 6 6 H 1.48494 * 109.47095 * 59.99833 * 3 2 1 7 7 C 1.38814 * 119.99771 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00365 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00227 * 0.02562 * 7 2 1 10 10 C 1.47027 * 125.64458 * 359.96049 * 9 7 2 11 11 C 1.54330 * 107.26750 * 181.09568 * 10 9 7 12 12 H 1.08994 * 110.71756 * 140.55689 * 11 10 9 13 13 O 1.42905 * 110.71816 * 263.82834 * 11 10 9 14 14 C 1.55152 * 102.94483 * 22.19097 * 11 10 9 15 15 H 1.08996 * 111.03511 * 82.58660 * 14 11 10 16 16 C 1.53003 * 111.00456 * 206.42469 * 14 11 10 17 17 N 1.46495 * 109.47033 * 178.64965 * 16 14 11 18 18 C 1.34778 * 120.00257 * 179.97438 * 17 16 14 19 19 O 1.21703 * 119.99404 * 0.02562 * 18 17 16 20 20 C 1.46650 * 120.00431 * 179.97438 * 18 17 16 21 21 C 1.36548 * 125.99044 * 180.02562 * 20 18 17 22 22 C 1.40360 * 106.70846 * 180.28893 * 21 20 18 23 23 C 1.35139 * 107.11532 * 359.57258 * 22 21 20 24 24 O 1.33926 * 108.76311 * 0.43407 * 23 22 21 25 25 C 1.47423 * 125.65336 * 179.97438 * 9 7 2 26 26 H 0.97005 * 119.99895 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.88177 * 300.50890 * 10 9 7 28 28 H 1.08997 * 109.88154 * 61.52488 * 10 9 7 29 29 H 0.96700 * 113.99790 * 293.52048 * 13 11 10 30 30 H 1.09002 * 109.47078 * 58.65028 * 16 14 11 31 31 H 1.08993 * 109.47145 * 298.65154 * 16 14 11 32 32 H 0.97008 * 120.00231 * 359.97438 * 17 16 14 33 33 H 1.08002 * 126.64113 * 0.02562 * 21 20 18 34 34 H 1.08007 * 126.44102 * 179.73700 * 22 21 20 35 35 H 1.07998 * 125.61056 * 180.15550 * 23 22 21 36 36 H 1.09004 * 110.36297 * 36.99671 * 25 9 7 37 37 H 1.08997 * 110.36713 * 274.67850 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1376 -2.5327 -0.0014 11 6 -0.4486 -4.0441 0.0253 12 1 -1.2985 -4.2515 0.6754 13 8 -0.6890 -4.5342 -1.2954 14 6 0.8518 -4.6562 0.6097 15 1 0.8574 -4.5970 1.6980 16 6 1.0367 -6.1009 0.1410 17 7 2.2880 -6.6344 0.6850 18 6 2.6605 -7.8986 0.4033 19 8 1.9576 -8.5969 -0.3035 20 6 3.9133 -8.4325 0.9474 21 6 4.4067 -9.6889 0.7413 22 6 5.6158 -9.7689 1.4497 23 6 5.8099 -8.5697 2.0418 24 8 4.7801 -7.7685 1.7398 25 6 1.9333 -3.7312 -0.0028 26 1 -0.4850 0.8401 -0.0004 27 1 -0.5575 -2.0522 0.8823 28 1 -0.5548 -2.0819 -0.9019 29 1 -1.4906 -4.1819 -1.7058 30 1 1.0734 -6.1277 -0.9481 31 1 0.2009 -6.7064 0.4914 32 1 2.8484 -6.0777 1.2481 33 1 3.9522 -10.4711 0.1513 34 1 6.2696 -10.6266 1.5081 35 1 6.6539 -8.3032 2.6606 36 1 2.8332 -3.7409 0.6122 37 1 2.1656 -4.0416 -1.0215 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957784147.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:06 Heat of formation + Delta-G solvation = -66.414123 kcal Electronic energy + Delta-G solvation = -21637.987228 eV Core-core repulsion = 18188.918470 eV Total energy + Delta-G solvation = -3449.068758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.62052 -40.77007 -39.74580 -36.42914 -36.20222 -34.12880 -33.87647 -31.84323 -30.62471 -29.38040 -27.31751 -25.61076 -23.77142 -22.67070 -22.19545 -21.48295 -21.05388 -19.56283 -19.09703 -18.11877 -17.36607 -17.29962 -16.84837 -16.77809 -16.13491 -15.74881 -15.46816 -15.21999 -14.84378 -14.40039 -14.32582 -14.05907 -13.90703 -13.58535 -13.52151 -13.14780 -13.10668 -12.71064 -12.33280 -12.09777 -11.92298 -11.79100 -11.72731 -11.31525 -11.03119 -10.79933 -10.73540 -10.28724 -9.62568 -8.92217 -7.87054 -5.22327 0.04008 1.44875 1.46002 1.46880 1.57090 1.68416 2.09806 2.21162 2.48098 3.26667 3.35175 3.53936 3.71986 3.89377 3.93538 3.97465 3.99295 4.13922 4.40882 4.56721 4.60348 4.64494 4.80946 4.86681 4.92959 4.97007 4.98118 5.21600 5.34722 5.41244 5.42420 5.51960 5.69459 5.85832 6.16744 6.40282 6.92608 6.97672 7.08440 7.74581 8.38974 9.23307 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.003923 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.144661 B = 7136.155418 C = 8211.826055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.625 5.625 10 C 0.159 3.841 11 C 0.097 3.903 12 H 0.090 0.910 13 O -0.571 6.571 14 C -0.094 4.094 15 H 0.108 0.892 16 C 0.153 3.847 17 N -0.708 5.708 18 C 0.598 3.402 19 O -0.563 6.563 20 C -0.110 4.110 21 C -0.125 4.125 22 C -0.233 4.233 23 C 0.009 3.991 24 O -0.173 6.173 25 C 0.142 3.858 26 H 0.247 0.753 27 H 0.024 0.976 28 H 0.015 0.985 29 H 0.391 0.609 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.414 0.586 33 H 0.160 0.840 34 H 0.186 0.814 35 H 0.254 0.746 36 H 0.049 0.951 37 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.280 -17.333 5.922 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.100 0.900 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.037 3.963 12 H 0.107 0.893 13 O -0.378 6.378 14 C -0.113 4.113 15 H 0.126 0.874 16 C 0.030 3.970 17 N -0.358 5.358 18 C 0.386 3.614 19 O -0.444 6.444 20 C -0.162 4.162 21 C -0.145 4.145 22 C -0.252 4.252 23 C -0.060 4.060 24 O -0.069 6.069 25 C 0.017 3.983 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.033 0.967 29 H 0.241 0.759 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.250 0.750 33 H 0.178 0.822 34 H 0.203 0.797 35 H 0.270 0.730 36 H 0.068 0.932 37 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 8.219 -17.590 5.624 20.213 hybrid contribution -0.107 1.666 -0.186 1.679 sum 8.112 -15.924 5.438 18.681 Atomic orbital electron populations 1.70150 1.06204 1.25240 1.58370 1.25625 0.96678 1.00934 1.02545 0.85004 0.78184 0.79396 0.76706 1.19065 1.22133 1.21649 1.19508 0.91052 0.83695 1.42926 0.90018 1.44705 1.02400 1.01017 1.87001 1.21704 0.84409 0.91908 0.98627 1.22944 0.96708 0.92345 0.84320 0.89256 1.86382 1.50184 1.71149 1.30125 1.22584 0.95140 0.92782 1.00807 0.87378 1.20999 0.85243 0.92119 0.98677 1.45925 1.24813 1.13113 1.51922 1.16805 0.82988 0.81807 0.79784 1.90848 1.54035 1.59697 1.39818 1.21821 0.95055 0.94564 1.04768 1.22269 0.96447 0.95663 1.00159 1.22232 0.98970 1.00983 1.03004 1.25413 0.91201 0.89121 1.00297 1.84077 1.28499 1.41519 1.52799 1.21675 0.95204 0.84466 0.96930 0.94359 0.95767 0.96696 0.75908 0.91939 0.90453 0.75000 0.82229 0.79701 0.72991 0.93249 0.97019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.27 10.31 21.65 0.22 -56.05 16 2 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 3 Si 0.98 45.44 29.55 68.60 2.03 47.47 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.24 -13.58 10.28 84.03 0.86 -12.72 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 N -0.62 -31.90 3.39 -691.93 -2.35 -34.25 16 10 C 0.16 7.59 5.14 86.73 0.45 8.04 16 11 C 0.10 3.42 4.09 31.78 0.13 3.55 16 12 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 13 O -0.57 -19.36 12.10 -148.98 -1.80 -21.16 16 14 C -0.09 -3.06 3.03 -9.40 -0.03 -3.09 16 15 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 16 C 0.15 4.64 4.74 86.38 0.41 5.05 16 17 N -0.71 -19.57 5.40 -467.11 -2.52 -22.10 16 18 C 0.60 17.98 7.79 86.44 0.67 18.65 16 19 O -0.56 -20.45 16.87 -4.36 -0.07 -20.52 16 20 C -0.11 -2.76 7.13 24.07 0.17 -2.58 16 21 C -0.12 -2.63 10.62 22.39 0.24 -2.39 16 22 C -0.23 -3.28 10.87 22.07 0.24 -3.04 16 23 C 0.01 0.12 12.08 67.11 0.81 0.93 16 24 O -0.17 -3.58 10.40 -4.99 -0.05 -3.63 16 25 C 0.14 5.80 6.40 86.86 0.56 6.35 16 26 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 27 H 0.02 1.28 7.38 -2.39 -0.02 1.26 16 28 H 0.01 0.81 7.43 -2.39 -0.02 0.79 16 29 H 0.39 10.42 9.12 -74.06 -0.68 9.74 16 30 H 0.06 2.20 7.42 -2.39 -0.02 2.18 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.41 10.07 8.09 -92.70 -0.75 9.32 16 33 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.25 0.68 8.06 -2.91 -0.02 0.65 16 36 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.01 0.52 8.00 -2.39 -0.02 0.50 16 Total: -1.00 -74.69 317.32 0.11 -74.58 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -0.32 Total: 20.11 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 4.97 Total: 15.54 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.65 Total: -112.40 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -1.93 Total: -45.31 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -74.69 0.11 -74.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957784147.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.166 kcal (2) G-P(sol) polarization free energy of solvation -74.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds