Wall clock time and date at job start Tue Mar 31 2020 01:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99844 * 2 1 4 4 H 1.48500 * 109.47360 * 240.00353 * 3 2 1 5 5 H 1.48503 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47192 * 120.00213 * 3 2 1 7 7 C 1.38815 * 120.00364 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99979 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99577 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.65127 * 0.03856 * 9 7 2 11 11 C 1.55126 * 104.94474 * 203.96999 * 10 9 7 12 12 H 1.09002 * 111.16602 * 205.13092 * 11 10 9 13 13 O 1.42899 * 110.93347 * 81.21318 * 11 10 9 14 14 C 1.55155 * 101.48283 * 323.22191 * 11 10 9 15 15 H 1.09004 * 110.71804 * 276.82836 * 14 11 10 16 16 C 1.53004 * 110.72043 * 153.73310 * 14 11 10 17 17 N 1.46499 * 109.47198 * 177.44014 * 16 14 11 18 18 C 1.34777 * 119.99665 * 180.27868 * 17 16 14 19 19 O 1.21693 * 120.00200 * 359.72115 * 18 17 16 20 20 C 1.46658 * 119.99639 * 179.72443 * 18 17 16 21 21 C 1.36545 * 125.98797 * 179.97438 * 20 18 17 22 22 C 1.40362 * 106.71183 * 179.97438 * 21 20 18 23 23 C 1.35135 * 107.10950 * 0.02562 * 22 21 20 24 24 O 1.33922 * 108.77032 * 359.76841 * 23 22 21 25 25 C 1.47020 * 125.64585 * 179.97438 * 9 7 2 26 26 H 0.97000 * 120.00012 * 359.97438 * 1 2 3 27 27 H 1.09002 * 110.36938 * 322.93233 * 10 9 7 28 28 H 1.09002 * 110.37126 * 85.14617 * 10 9 7 29 29 H 0.96695 * 113.99966 * 67.96640 * 13 11 10 30 30 H 1.09009 * 109.46730 * 57.43801 * 16 14 11 31 31 H 1.08998 * 109.46846 * 297.44345 * 16 14 11 32 32 H 0.97001 * 119.99790 * 359.97438 * 17 16 14 33 33 H 1.08007 * 126.64433 * 0.02562 * 21 20 18 34 34 H 1.07993 * 126.44536 * 179.97438 * 22 21 20 35 35 H 1.08005 * 125.61421 * 180.02562 * 23 22 21 36 36 H 1.08997 * 109.88257 * 59.55560 * 25 9 7 37 37 H 1.09003 * 109.88420 * 298.39107 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0016 10 6 -0.1414 -2.5331 -0.0031 11 6 -0.4052 -3.9356 0.6051 12 1 -1.3606 -4.3375 0.2677 13 8 -0.3452 -3.8928 2.0322 14 6 0.7786 -4.7524 0.0230 15 1 0.5490 -5.0996 -0.9845 16 6 1.1225 -5.9320 0.9347 17 7 2.2008 -6.7182 0.3302 18 6 2.6675 -7.8161 0.9575 19 8 2.1967 -8.1513 2.0284 20 6 3.7427 -8.6066 0.3494 21 6 4.3054 -9.7341 0.8752 22 6 5.2871 -10.1571 -0.0345 23 6 5.2810 -9.2799 -1.0624 24 8 4.3460 -8.3499 -0.8297 25 6 1.9319 -3.7274 -0.0028 26 1 -0.4850 0.8400 0.0004 27 1 -0.5998 -1.7593 0.6127 28 1 -0.5265 -2.4841 -1.0216 29 1 -1.0649 -3.3931 2.4412 30 1 0.2416 -6.5612 1.0626 31 1 1.4461 -5.5580 1.9061 32 1 2.5757 -6.4512 -0.5236 33 1 4.0450 -10.2091 1.8096 34 1 5.9275 -11.0206 0.0682 35 1 5.9217 -9.3242 -1.9308 36 1 2.5580 -3.8517 0.8808 37 1 2.5289 -3.8633 -0.9047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957784148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:09 Heat of formation + Delta-G solvation = -64.215365 kcal Electronic energy + Delta-G solvation = -21662.055393 eV Core-core repulsion = 18213.081980 eV Total energy + Delta-G solvation = -3448.973413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.62931 -40.77641 -39.71138 -36.35480 -36.21120 -34.15205 -33.89600 -31.84393 -30.64405 -29.34549 -27.31237 -25.60432 -23.76865 -22.67754 -22.22200 -21.44537 -21.01124 -19.54894 -19.09600 -18.08280 -17.37190 -17.31415 -16.82268 -16.81816 -16.21475 -15.75671 -15.61073 -15.26114 -14.69244 -14.43430 -14.11864 -13.97933 -13.90122 -13.69434 -13.52472 -13.17585 -13.04157 -12.62986 -12.37446 -12.06665 -11.89989 -11.83547 -11.77575 -11.32148 -11.03966 -10.80795 -10.65995 -10.30627 -9.63497 -8.86310 -7.78907 -5.21471 0.03081 1.44149 1.46103 1.49028 1.55205 1.67208 2.08642 2.20462 2.48952 3.27368 3.35120 3.59303 3.72488 3.88404 3.94088 3.97349 3.99242 4.13394 4.42024 4.57861 4.61736 4.64051 4.80590 4.87778 4.92695 4.96932 4.99013 5.21581 5.32296 5.39452 5.41670 5.50296 5.77166 5.84859 6.28792 6.39621 6.94505 6.98725 7.11055 7.77536 8.40374 9.22932 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.024638 B = 0.003791 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.202562 B = 7384.881240 C = 8161.507693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.979 3.021 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.621 5.621 10 C 0.127 3.873 11 C 0.094 3.906 12 H 0.093 0.907 13 O -0.570 6.570 14 C -0.092 4.092 15 H 0.115 0.885 16 C 0.154 3.846 17 N -0.707 5.707 18 C 0.598 3.402 19 O -0.563 6.563 20 C -0.110 4.110 21 C -0.125 4.125 22 C -0.233 4.233 23 C 0.010 3.990 24 O -0.173 6.173 25 C 0.142 3.858 26 H 0.248 0.752 27 H 0.080 0.920 28 H 0.002 0.998 29 H 0.389 0.611 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.414 0.586 33 H 0.159 0.841 34 H 0.186 0.814 35 H 0.255 0.745 36 H 0.012 0.988 37 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.342 -19.001 -3.722 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.346 5.346 10 C 0.001 3.999 11 C 0.034 3.966 12 H 0.110 0.890 13 O -0.377 6.377 14 C -0.111 4.111 15 H 0.133 0.867 16 C 0.030 3.970 17 N -0.358 5.358 18 C 0.385 3.615 19 O -0.445 6.445 20 C -0.162 4.162 21 C -0.146 4.146 22 C -0.252 4.252 23 C -0.060 4.060 24 O -0.068 6.068 25 C 0.016 3.984 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.020 0.980 29 H 0.238 0.762 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.251 0.749 33 H 0.177 0.823 34 H 0.203 0.797 35 H 0.271 0.729 36 H 0.030 0.970 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.401 -19.082 -3.256 20.388 hybrid contribution 0.071 1.513 -0.127 1.520 sum 6.472 -17.569 -3.383 19.026 Atomic orbital electron populations 1.69978 1.05989 1.25103 1.58580 1.25564 0.96704 1.00736 1.02636 0.85144 0.77186 0.78881 0.78057 1.20376 1.21702 1.20730 1.19388 0.90916 0.83952 1.42724 0.90640 1.44632 1.02651 1.00674 1.86682 1.22496 0.84630 0.95305 0.97440 1.23146 0.97207 0.95116 0.81164 0.88960 1.86376 1.55361 1.76964 1.19010 1.22459 0.95329 0.93386 0.99900 0.86732 1.21035 0.89421 0.90671 0.95862 1.45925 1.38284 1.26354 1.25193 1.16826 0.80673 0.80163 0.83788 1.90848 1.60127 1.71108 1.22391 1.21801 1.02904 1.01950 0.89544 1.22272 0.96377 0.94427 1.01500 1.22229 1.03081 1.04631 0.95257 1.25422 0.91407 0.87152 1.01969 1.84072 1.41964 1.47117 1.33682 1.21436 0.94623 0.84827 0.97465 0.94256 0.90169 0.98022 0.76208 0.90403 0.92603 0.74940 0.82298 0.79693 0.72897 0.96951 0.95171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.39 10.09 21.65 0.22 -55.17 16 2 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.24 -13.66 10.27 84.03 0.86 -12.80 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.62 -31.98 3.40 -691.57 -2.35 -34.33 16 10 C 0.13 5.99 5.62 86.93 0.49 6.48 16 11 C 0.09 3.34 4.19 32.06 0.13 3.48 16 12 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 13 O -0.57 -20.69 12.28 -148.98 -1.83 -22.52 16 14 C -0.09 -3.00 2.91 -9.60 -0.03 -3.02 16 15 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 16 C 0.15 4.79 4.54 86.38 0.39 5.18 16 17 N -0.71 -19.80 5.43 -467.09 -2.53 -22.33 16 18 C 0.60 18.25 7.79 86.44 0.67 18.92 16 19 O -0.56 -20.93 16.86 -4.33 -0.07 -21.00 16 20 C -0.11 -2.77 7.13 24.07 0.17 -2.60 16 21 C -0.12 -2.67 10.62 22.39 0.24 -2.43 16 22 C -0.23 -3.29 10.88 22.07 0.24 -3.05 16 23 C 0.01 0.12 12.08 67.10 0.81 0.93 16 24 O -0.17 -3.53 10.40 -4.96 -0.05 -3.59 16 25 C 0.14 5.87 6.64 86.73 0.58 6.45 16 26 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 27 H 0.08 4.32 5.87 -2.39 -0.01 4.30 16 28 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.39 11.50 9.12 -74.06 -0.68 10.82 16 30 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.06 2.09 7.49 -2.39 -0.02 2.07 16 32 H 0.41 9.98 8.16 -92.71 -0.76 9.22 16 33 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 35 H 0.26 0.59 8.06 -2.91 -0.02 0.56 16 36 H 0.01 0.55 7.73 -2.39 -0.02 0.54 16 37 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -74.75 316.86 0.11 -74.64 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.32 Total: 22.15 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.03 Total: 14.40 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -4.66 Total: -111.83 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.95 Total: -47.11 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.75 0.11 -74.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957784148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.425 kcal (2) G-P(sol) polarization free energy of solvation -74.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds