Wall clock time and date at job start Tue Mar 31 2020 01:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47177 * 240.00036 * 3 2 1 5 5 H 1.48505 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46722 * 119.99793 * 3 2 1 7 7 C 1.38809 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00354 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00263 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.65507 * 179.97438 * 9 7 2 11 11 C 1.54315 * 107.27241 * 178.99274 * 10 9 7 12 12 H 1.08999 * 110.72447 * 96.17468 * 11 10 9 13 13 C 1.53007 * 110.71722 * 219.44307 * 11 10 9 14 14 N 1.46500 * 109.47149 * 288.52141 * 13 11 10 15 15 C 1.34775 * 119.99538 * 179.97438 * 14 13 11 16 16 O 1.21610 * 120.00529 * 0.02562 * 15 14 13 17 17 C 1.47380 * 119.99789 * 179.97438 * 15 14 13 18 18 C 1.47020 * 127.19343 * 180.02562 * 17 15 14 19 19 C 1.34181 * 105.95660 * 179.97438 * 18 17 15 20 20 O 1.34219 * 109.12030 * 359.97438 * 19 18 17 21 21 C 1.33648 * 110.91246 * 359.76387 * 20 19 18 22 22 C 1.55149 * 102.94351 * 337.80728 * 11 10 9 23 23 H 1.09005 * 111.00864 * 277.38665 * 22 11 10 24 24 O 1.42903 * 111.00594 * 153.58080 * 22 11 10 25 25 C 1.47426 * 125.64510 * 0.06454 * 9 7 2 26 26 H 0.96999 * 120.00355 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.87762 * 59.57199 * 10 9 7 28 28 H 1.09000 * 109.88119 * 298.41507 * 10 9 7 29 29 H 1.09000 * 109.46690 * 48.52551 * 13 11 10 30 30 H 1.09007 * 109.46925 * 168.52442 * 13 11 10 31 31 H 0.96993 * 120.00177 * 0.02562 * 14 13 11 32 32 H 1.08003 * 127.02674 * 359.97438 * 18 17 15 33 33 H 1.07995 * 125.44070 * 180.02562 * 19 18 17 34 34 H 1.08001 * 125.80752 * 180.26953 * 21 20 19 35 35 H 0.96700 * 114.00311 * 180.02562 * 24 22 11 36 36 H 1.08994 * 110.37345 * 85.23508 * 25 9 7 37 37 H 1.09007 * 110.36591 * 322.90951 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.9319 -3.7275 -0.0016 11 6 0.7786 -4.7524 0.0247 12 1 0.5461 -5.0974 -0.9827 13 6 1.1233 -5.9319 0.9363 14 7 2.1570 -6.7536 0.3019 15 6 2.6206 -7.8541 0.9266 16 8 2.1805 -8.1654 2.0168 17 6 3.6600 -8.6811 0.2881 18 6 4.2748 -9.9050 0.8227 19 6 5.1615 -10.3062 -0.1011 20 8 5.1397 -9.4483 -1.1331 21 6 4.2482 -8.4746 -0.9254 22 6 -0.4015 -3.9327 0.6102 23 1 -0.3524 -3.8998 1.6987 24 8 -1.6566 -4.4575 0.1727 25 6 -0.1414 -2.5332 -0.0014 26 1 -0.4850 0.8400 0.0004 27 1 2.5584 -3.8515 0.8818 28 1 2.5284 -3.8637 -0.9037 29 1 1.4921 -5.5573 1.8912 30 1 0.2309 -6.5353 1.1029 31 1 2.5083 -6.5052 -0.5674 32 1 4.0572 -10.3835 1.7661 33 1 5.7914 -11.1802 -0.0264 34 1 4.0318 -7.6611 -1.6020 35 1 -2.4238 -3.9772 0.5129 36 1 -0.5268 -2.4864 -1.0198 37 1 -0.5995 -1.7591 0.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957873988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:32 Heat of formation + Delta-G solvation = -41.342245 kcal Electronic energy + Delta-G solvation = -21460.994595 eV Core-core repulsion = 18013.013035 eV Total energy + Delta-G solvation = -3447.981560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.73348 -39.49399 -38.14856 -35.18259 -34.66593 -33.10356 -32.24291 -30.42461 -29.35598 -27.56716 -25.70242 -24.16342 -22.74782 -21.65971 -20.67100 -20.08726 -19.72320 -18.49548 -17.06057 -16.81493 -16.35817 -16.21416 -15.65636 -15.23797 -14.96227 -14.80505 -14.09313 -13.84989 -13.37510 -13.12091 -13.04377 -12.85166 -12.66013 -12.36838 -11.98123 -11.59285 -11.27643 -10.98955 -10.82508 -10.67832 -10.14899 -10.10789 -10.01485 -9.88976 -9.69202 -9.19176 -9.11171 -8.92349 -8.73527 -6.94490 -5.74239 -3.17061 1.17375 1.87815 2.69267 3.17075 3.34248 3.36047 3.40316 3.41569 4.36494 4.39810 4.49383 4.68265 4.86399 5.02511 5.19406 5.31214 5.41459 5.44236 5.48540 5.64178 5.68599 5.91875 6.00784 6.03164 6.06646 6.18069 6.33631 6.43177 6.56771 6.71163 6.77754 7.32399 7.50935 7.51976 7.71270 8.13249 8.23058 8.26056 9.11700 9.72597 10.35600 11.29687 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.003704 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.907390 B = 7558.473883 C = 8418.499488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.010 4.010 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.141 3.859 11 C -0.105 4.105 12 H 0.086 0.914 13 C 0.134 3.866 14 N -0.720 5.720 15 C 0.584 3.416 16 O -0.540 6.540 17 C -0.232 4.232 18 C -0.165 4.165 19 C -0.044 4.044 20 O -0.175 6.175 21 C 0.021 3.979 22 C 0.081 3.919 23 H 0.061 0.939 24 O -0.569 6.569 25 C 0.128 3.872 26 H 0.254 0.746 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.159 0.841 33 H 0.208 0.792 34 H 0.212 0.788 35 H 0.377 0.623 36 H 0.022 0.978 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.708 -16.705 -1.577 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.747 3.253 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.015 3.985 11 C -0.124 4.124 12 H 0.105 0.895 13 C 0.011 3.989 14 N -0.371 5.371 15 C 0.371 3.629 16 O -0.418 6.418 17 C -0.237 4.237 18 C -0.185 4.185 19 C -0.110 4.110 20 O -0.070 6.070 21 C -0.050 4.050 22 C 0.021 3.979 23 H 0.079 0.921 24 O -0.374 6.374 25 C 0.003 3.997 26 H 0.065 0.935 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.232 0.768 32 H 0.177 0.823 33 H 0.225 0.775 34 H 0.229 0.771 35 H 0.224 0.776 36 H 0.040 0.960 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.903 -17.136 -1.337 18.173 hybrid contribution 0.198 1.397 -0.052 1.412 sum 6.101 -15.739 -1.389 16.937 Atomic orbital electron populations 1.69747 1.04958 1.25089 1.57340 1.24803 0.95760 0.97851 1.02109 0.86115 0.78409 0.82787 0.77959 1.21129 1.21504 1.21058 1.19046 0.90535 0.82273 1.43591 0.90317 1.44310 1.01609 0.99820 1.87086 1.21385 0.93301 0.85513 0.98314 1.22410 0.96262 0.94153 0.99613 0.89540 1.21463 0.90244 0.91022 0.96175 1.45892 1.41831 1.26401 1.22987 1.17263 0.80873 0.80049 0.84734 1.90781 1.59368 1.71127 1.20533 1.21609 1.04183 1.00610 0.97271 1.22801 0.98204 0.95983 1.01517 1.23942 1.03346 0.96768 0.86898 1.83794 1.49965 1.31484 1.41777 1.24517 0.90495 0.92609 0.97351 1.23314 0.82140 0.95484 0.96992 0.92085 1.86366 1.15742 1.58989 1.76317 1.22550 0.85338 0.92545 0.99276 0.93543 0.95267 0.95797 0.91069 0.91012 0.76758 0.82334 0.77527 0.77108 0.77593 0.95984 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.19 10.09 55.49 0.56 -25.63 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 3 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.23 -6.15 10.27 -15.06 -0.15 -6.31 16 8 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 9 N -0.60 -14.91 3.39 -170.06 -0.58 -15.49 16 10 C 0.14 2.77 6.75 -3.07 -0.02 2.75 16 11 C -0.11 -1.78 2.70 -88.79 -0.24 -2.02 16 12 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 13 C 0.13 2.06 5.02 -4.04 -0.02 2.04 16 14 N -0.72 -9.54 5.46 -61.39 -0.34 -9.88 16 15 C 0.58 8.60 7.81 -12.54 -0.10 8.50 16 16 O -0.54 -10.01 16.98 5.27 0.09 -9.92 16 17 C -0.23 -2.76 6.31 -103.27 -0.65 -3.42 16 18 C -0.17 -1.74 11.01 -37.45 -0.41 -2.15 16 19 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 20 O -0.18 -1.60 10.52 7.65 0.08 -1.52 16 21 C 0.02 0.19 11.61 30.08 0.35 0.54 16 22 C 0.08 1.52 3.88 -24.58 -0.10 1.42 16 23 H 0.06 1.12 8.05 -51.93 -0.42 0.71 16 24 O -0.57 -9.70 13.47 -35.23 -0.47 -10.17 16 25 C 0.13 3.02 5.62 -2.52 -0.01 3.00 16 26 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.03 0.58 7.68 -51.93 -0.40 0.18 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.40 4.20 7.44 -40.82 -0.30 3.90 16 32 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.21 1.17 7.47 -52.49 -0.39 0.78 16 35 H 0.38 4.99 9.12 45.56 0.42 5.40 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.11 2.85 5.87 -51.92 -0.31 2.54 16 LS Contribution 317.70 15.07 4.79 4.79 Total: -1.00 -34.22 317.70 -5.89 -40.11 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -3.90 Total: 7.14 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -1.10 Total: 4.00 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: -0.35 Total: -51.00 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.30 Total: -21.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.22 -5.89 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957873988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.233 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds