Wall clock time and date at job start Tue Mar 31 2020 01:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47177 * 240.00036 * 3 2 1 5 5 H 1.48505 * 109.46838 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46722 * 119.99793 * 3 2 1 7 7 C 1.38809 * 120.00277 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00354 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00263 * 359.97438 * 7 2 1 10 10 C 1.47023 * 125.65507 * 179.97438 * 9 7 2 11 11 C 1.54315 * 107.27241 * 178.99274 * 10 9 7 12 12 H 1.08999 * 110.72447 * 96.17468 * 11 10 9 13 13 C 1.53007 * 110.71722 * 219.44307 * 11 10 9 14 14 N 1.46500 * 109.47149 * 288.52141 * 13 11 10 15 15 C 1.34775 * 119.99538 * 179.97438 * 14 13 11 16 16 O 1.21610 * 120.00529 * 0.02562 * 15 14 13 17 17 C 1.47380 * 119.99789 * 179.97438 * 15 14 13 18 18 C 1.47020 * 127.19343 * 180.02562 * 17 15 14 19 19 C 1.34181 * 105.95660 * 179.97438 * 18 17 15 20 20 O 1.34219 * 109.12030 * 359.97438 * 19 18 17 21 21 C 1.33648 * 110.91246 * 359.76387 * 20 19 18 22 22 C 1.55149 * 102.94351 * 337.80728 * 11 10 9 23 23 H 1.09005 * 111.00864 * 277.38665 * 22 11 10 24 24 O 1.42903 * 111.00594 * 153.58080 * 22 11 10 25 25 C 1.47426 * 125.64510 * 0.06454 * 9 7 2 26 26 H 0.96999 * 120.00355 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.87762 * 59.57199 * 10 9 7 28 28 H 1.09000 * 109.88119 * 298.41507 * 10 9 7 29 29 H 1.09000 * 109.46690 * 48.52551 * 13 11 10 30 30 H 1.09007 * 109.46925 * 168.52442 * 13 11 10 31 31 H 0.96993 * 120.00177 * 0.02562 * 14 13 11 32 32 H 1.08003 * 127.02674 * 359.97438 * 18 17 15 33 33 H 1.07995 * 125.44070 * 180.02562 * 19 18 17 34 34 H 1.08001 * 125.80752 * 180.26953 * 21 20 19 35 35 H 0.96700 * 114.00311 * 180.02562 * 24 22 11 36 36 H 1.08994 * 110.37345 * 85.23508 * 25 9 7 37 37 H 1.09007 * 110.36591 * 322.90951 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 1.9319 -3.7275 -0.0016 11 6 0.7786 -4.7524 0.0247 12 1 0.5461 -5.0974 -0.9827 13 6 1.1233 -5.9319 0.9363 14 7 2.1570 -6.7536 0.3019 15 6 2.6206 -7.8541 0.9266 16 8 2.1805 -8.1654 2.0168 17 6 3.6600 -8.6811 0.2881 18 6 4.2748 -9.9050 0.8227 19 6 5.1615 -10.3062 -0.1011 20 8 5.1397 -9.4483 -1.1331 21 6 4.2482 -8.4746 -0.9254 22 6 -0.4015 -3.9327 0.6102 23 1 -0.3524 -3.8998 1.6987 24 8 -1.6566 -4.4575 0.1727 25 6 -0.1414 -2.5332 -0.0014 26 1 -0.4850 0.8400 0.0004 27 1 2.5584 -3.8515 0.8818 28 1 2.5284 -3.8637 -0.9037 29 1 1.4921 -5.5573 1.8912 30 1 0.2309 -6.5353 1.1029 31 1 2.5083 -6.5052 -0.5674 32 1 4.0572 -10.3835 1.7661 33 1 5.7914 -11.1802 -0.0264 34 1 4.0318 -7.6611 -1.6020 35 1 -2.4238 -3.9772 0.5129 36 1 -0.5268 -2.4864 -1.0198 37 1 -0.5995 -1.7591 0.6144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957873988.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:31 Heat of formation + Delta-G solvation = -68.608563 kcal Electronic energy + Delta-G solvation = -21462.176951 eV Core-core repulsion = 18013.013035 eV Total energy + Delta-G solvation = -3449.163916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.45183 -40.72965 -39.65887 -36.65703 -36.13511 -34.21400 -33.69503 -31.68874 -30.54152 -29.23703 -27.31936 -25.62637 -23.95281 -22.37216 -22.30000 -21.47757 -20.88593 -19.42696 -18.89253 -18.29301 -17.25829 -17.14767 -17.04871 -16.63537 -16.29597 -15.76895 -15.65740 -15.40482 -14.74429 -14.44807 -14.33998 -14.05225 -13.83555 -13.65842 -13.33196 -13.26039 -13.10299 -12.72084 -12.39268 -12.36250 -11.89787 -11.88416 -11.46700 -11.16497 -10.85221 -10.81315 -10.73215 -10.19252 -9.71594 -8.92490 -7.79628 -5.24958 0.36531 1.14957 1.48040 1.50658 1.56967 1.98406 2.16635 2.31735 2.48080 3.19700 3.31043 3.57912 3.64937 3.73178 3.80462 3.91207 4.10138 4.14799 4.41809 4.45665 4.55069 4.61571 4.74345 4.79415 4.87803 4.96243 5.03397 5.23306 5.33480 5.36190 5.42805 5.48290 5.73664 6.00637 6.24740 6.48982 6.87760 7.07460 7.14997 7.73988 8.36498 9.22036 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.003704 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.907390 B = 7558.473883 C = 8418.499488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.981 3.019 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.085 0.915 9 N -0.624 5.624 10 C 0.139 3.861 11 C -0.087 4.087 12 H 0.097 0.903 13 C 0.147 3.853 14 N -0.709 5.709 15 C 0.583 3.417 16 O -0.588 6.588 17 C -0.270 4.270 18 C -0.199 4.199 19 C -0.022 4.022 20 O -0.176 6.176 21 C 0.045 3.955 22 C 0.096 3.904 23 H 0.066 0.934 24 O -0.569 6.569 25 C 0.134 3.866 26 H 0.248 0.752 27 H 0.031 0.969 28 H 0.041 0.959 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.413 0.587 32 H 0.154 0.846 33 H 0.249 0.751 34 H 0.246 0.754 35 H 0.394 0.606 36 H -0.006 1.006 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.362 -17.909 -2.673 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.809 3.191 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.103 0.897 9 N -0.351 5.351 10 C 0.014 3.986 11 C -0.106 4.106 12 H 0.115 0.885 13 C 0.023 3.977 14 N -0.361 5.361 15 C 0.373 3.627 16 O -0.470 6.470 17 C -0.275 4.275 18 C -0.219 4.219 19 C -0.087 4.087 20 O -0.071 6.071 21 C -0.026 4.026 22 C 0.035 3.965 23 H 0.084 0.916 24 O -0.376 6.376 25 C 0.008 3.992 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.250 0.750 32 H 0.172 0.828 33 H 0.265 0.735 34 H 0.262 0.738 35 H 0.244 0.756 36 H 0.012 0.988 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.576 -18.362 -2.463 20.015 hybrid contribution -0.301 1.725 0.254 1.769 sum 7.275 -16.637 -2.209 18.292 Atomic orbital electron populations 1.69995 1.06218 1.25230 1.58398 1.25634 0.96643 1.01035 1.02487 0.85114 0.77118 0.78640 0.78218 1.20318 1.22057 1.20317 1.19445 0.91158 0.83521 1.42902 0.89725 1.44591 1.02331 1.01103 1.87081 1.21543 0.94234 0.83869 0.98935 1.22234 0.94336 0.93676 1.00341 0.88509 1.21160 0.90735 0.90450 0.95330 1.45717 1.41151 1.25788 1.23435 1.17669 0.80864 0.80037 0.84147 1.90749 1.61173 1.72363 1.22690 1.21524 1.05178 1.01701 0.99067 1.22966 0.99870 0.96480 1.02542 1.24625 1.02083 0.96738 0.85276 1.83847 1.49660 1.31546 1.42011 1.25064 0.88691 0.92494 0.96339 1.22995 0.83581 0.93031 0.96904 0.91631 1.86340 1.15810 1.58933 1.76496 1.22317 0.84885 0.94711 0.97304 0.94232 0.95088 0.94147 0.92225 0.91270 0.74969 0.82800 0.73532 0.73824 0.75640 0.98826 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.12 10.09 21.65 0.22 -54.90 16 2 C -0.07 -3.61 5.49 84.86 0.47 -3.15 16 3 Si 0.98 44.53 29.55 68.60 2.03 46.56 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.24 -13.14 10.27 84.03 0.86 -12.27 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 N -0.62 -30.98 3.39 -691.96 -2.35 -33.33 16 10 C 0.14 5.30 6.75 86.73 0.59 5.88 16 11 C -0.09 -2.81 2.70 -9.61 -0.03 -2.84 16 12 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 13 C 0.15 4.34 5.02 86.38 0.43 4.77 16 14 N -0.71 -17.64 5.46 -466.40 -2.55 -20.19 16 15 C 0.58 16.81 7.81 86.65 0.68 17.49 16 16 O -0.59 -22.10 16.98 -4.06 -0.07 -22.17 16 17 C -0.27 -6.06 6.31 -18.99 -0.12 -6.18 16 18 C -0.20 -3.94 11.01 23.65 0.26 -3.68 16 19 C -0.02 -0.29 12.03 66.89 0.80 0.52 16 20 O -0.18 -2.62 10.52 4.47 0.05 -2.57 16 21 C 0.04 0.67 11.61 67.40 0.78 1.46 16 22 C 0.10 3.52 3.88 31.99 0.12 3.64 16 23 H 0.07 2.38 8.05 -2.38 -0.02 2.36 16 24 O -0.57 -18.68 13.47 -148.98 -2.01 -20.69 16 25 C 0.13 6.39 5.62 86.86 0.49 6.87 16 26 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 27 H 0.03 1.18 7.68 -2.39 -0.02 1.17 16 28 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.92 7.93 -2.39 -0.02 1.91 16 30 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.41 7.61 7.44 -92.71 -0.69 6.92 16 32 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 33 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 34 H 0.25 1.71 7.47 -2.91 -0.02 1.68 16 35 H 0.39 10.01 9.12 -74.06 -0.68 9.34 16 36 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 37 H 0.08 4.22 5.87 -2.38 -0.01 4.21 16 Total: -1.00 -75.58 317.70 0.41 -75.17 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.25 Total: 19.59 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.34 Total: 12.52 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -4.68 Total: -108.41 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -2.03 Total: -45.43 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -75.58 0.41 -75.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957873988.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.564 kcal (2) G-P(sol) polarization free energy of solvation -75.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds