Wall clock time and date at job start Tue Mar 31 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99622 * 2 1 4 4 H 1.48499 * 109.47140 * 270.00211 * 3 2 1 5 5 H 1.48496 * 109.47439 * 30.00438 * 3 2 1 6 6 H 1.48503 * 109.46841 * 150.00273 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65186 * 0.02640 * 9 7 2 11 11 C 1.54322 * 107.27269 * 178.90274 * 10 9 7 12 12 H 1.09002 * 110.71963 * 219.44477 * 11 10 9 13 13 O 1.42896 * 110.71801 * 96.34675 * 11 10 9 14 14 C 1.55164 * 102.94370 * 337.80987 * 11 10 9 15 15 H 1.09001 * 111.00047 * 277.42887 * 14 11 10 16 16 C 1.52995 * 111.00483 * 153.57714 * 14 11 10 17 17 N 1.46496 * 109.47280 * 175.00152 * 16 14 11 18 18 C 1.34777 * 120.00371 * 179.97438 * 17 16 14 19 19 O 1.21613 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.47375 * 120.00348 * 179.97438 * 18 17 16 21 21 C 1.47019 * 127.19415 * 179.70502 * 20 18 17 22 22 C 1.34182 * 105.95146 * 179.88908 * 21 20 18 23 23 O 1.34210 * 109.12810 * 0.38336 * 22 21 20 24 24 C 1.33662 * 110.90797 * 359.73998 * 23 22 21 25 25 C 1.47435 * 125.64724 * 179.97438 * 9 7 2 26 26 H 0.96995 * 120.00311 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.87665 * 59.48574 * 10 9 7 28 28 H 1.08996 * 110.00949 * 298.39749 * 10 9 7 29 29 H 0.96702 * 113.99631 * 63.84596 * 13 11 10 30 30 H 1.09004 * 109.46918 * 295.00017 * 16 14 11 31 31 H 1.08997 * 109.47200 * 54.99711 * 16 14 11 32 32 H 0.97005 * 119.99755 * 359.97438 * 17 16 14 33 33 H 1.07998 * 127.02239 * 0.02562 * 21 20 18 34 34 H 1.07997 * 125.43299 * 180.12327 * 22 21 20 35 35 H 1.07994 * 125.80014 * 180.02562 * 24 23 22 36 36 H 1.08997 * 110.36223 * 323.00847 * 25 9 7 37 37 H 1.09005 * 110.35921 * 85.32528 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5328 -0.0006 11 6 -0.4483 -4.0441 -0.0288 12 1 -1.2984 -4.2509 -0.6790 13 8 -0.6924 -4.5347 1.2909 14 6 0.8521 -4.6556 -0.6141 15 1 0.8570 -4.5947 -1.7024 16 6 1.0372 -6.1007 -0.1470 17 7 2.2061 -6.6826 -0.8111 18 6 2.5647 -7.9556 -0.5512 19 8 1.9180 -8.6210 0.2349 20 6 3.7403 -8.5412 -1.2197 21 6 4.2731 -9.9010 -1.0508 22 6 5.3424 -9.9809 -1.8574 23 8 5.5088 -8.8062 -2.4848 24 6 4.5651 -7.9328 -2.1201 25 6 1.9336 -3.7312 -0.0016 26 1 -0.4850 0.8400 0.0004 27 1 -0.5575 -2.0513 -0.8837 28 1 -0.5566 -2.0848 0.9004 29 1 -1.4730 -4.1522 1.7146 30 1 1.1869 -6.1172 0.9325 31 1 0.1495 -6.6807 -0.3996 32 1 2.7221 -6.1518 -1.4379 33 1 3.8822 -10.6777 -0.4103 34 1 5.9715 -10.8503 -1.9789 35 1 4.4713 -6.9180 -2.4776 36 1 2.8330 -3.7398 -0.6172 37 1 2.1666 -4.0428 1.0166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957873989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:35 Heat of formation + Delta-G solvation = -40.909992 kcal Electronic energy + Delta-G solvation = -21549.542528 eV Core-core repulsion = 18101.579712 eV Total energy + Delta-G solvation = -3447.962816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.71452 -39.45330 -38.21011 -34.94041 -34.58008 -33.07104 -32.13240 -30.39765 -29.32282 -27.73461 -25.64347 -24.17150 -22.74766 -21.64224 -20.55507 -20.09007 -19.68169 -18.44886 -17.34175 -16.55265 -16.33563 -16.13797 -15.51785 -14.96736 -14.90954 -14.79414 -14.05657 -13.75868 -13.53725 -13.21249 -13.10368 -12.74724 -12.62922 -12.54480 -11.90161 -11.43410 -11.24490 -10.85264 -10.65200 -10.50913 -10.20014 -10.07816 -9.99440 -9.86336 -9.78629 -9.20808 -9.07982 -8.86607 -8.69147 -6.89880 -5.77645 -3.10862 1.19642 1.89634 2.71171 3.22392 3.36367 3.37853 3.41816 3.43697 4.39489 4.43885 4.51678 4.68588 4.90689 5.09172 5.28085 5.32152 5.40803 5.46665 5.51843 5.57566 5.70669 5.88845 6.04550 6.06579 6.08990 6.35759 6.37367 6.45579 6.60077 6.72964 6.86521 7.35435 7.45077 7.56558 7.70928 8.17543 8.21548 8.28137 9.15108 9.75797 10.41282 11.34385 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.003792 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.772097 B = 7382.197583 C = 8410.659198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.153 3.847 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.564 6.564 14 C -0.109 4.109 15 H 0.089 0.911 16 C 0.142 3.858 17 N -0.723 5.723 18 C 0.583 3.417 19 O -0.539 6.539 20 C -0.232 4.232 21 C -0.166 4.166 22 C -0.044 4.044 23 O -0.175 6.175 24 C 0.020 3.980 25 C 0.145 3.855 26 H 0.252 0.748 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.376 0.624 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.397 0.603 33 H 0.159 0.841 34 H 0.208 0.792 35 H 0.212 0.788 36 H 0.036 0.964 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -15.934 -5.385 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.330 5.330 10 C 0.027 3.973 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.370 6.370 14 C -0.129 4.129 15 H 0.107 0.893 16 C 0.019 3.981 17 N -0.373 5.373 18 C 0.370 3.630 19 O -0.418 6.418 20 C -0.236 4.236 21 C -0.185 4.185 22 C -0.110 4.110 23 O -0.070 6.070 24 C -0.050 4.050 25 C 0.018 3.982 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.223 0.777 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.231 0.769 33 H 0.176 0.824 34 H 0.224 0.776 35 H 0.229 0.771 36 H 0.054 0.946 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.060 -16.452 -5.126 18.267 hybrid contribution -0.007 1.554 -0.071 1.556 sum 6.053 -14.898 -5.197 16.900 Atomic orbital electron populations 1.69927 1.04925 1.25118 1.57277 1.24797 0.95754 0.97729 1.02211 0.86093 0.78611 0.83353 0.77555 1.21585 1.21656 1.20671 1.19075 0.90480 0.82354 1.43687 0.90360 1.44377 1.01360 0.99975 1.87248 1.21865 0.85347 0.88386 1.01655 1.23116 0.95060 0.96215 0.83321 0.92529 1.86398 1.51472 1.69156 1.29969 1.22683 0.97173 0.93087 0.99973 0.89285 1.21195 0.86645 0.92178 0.98087 1.45976 1.31743 1.12861 1.46768 1.17255 0.83010 0.81438 0.81316 1.90784 1.54333 1.60972 1.35667 1.21631 1.00754 0.96551 1.04708 1.22802 0.96993 0.96381 1.02358 1.23936 1.01005 0.88334 0.97717 1.83795 1.45963 1.20942 1.56346 1.24522 0.88105 0.95358 0.97054 1.21592 0.93631 0.85742 0.97194 0.93720 0.92942 0.93219 0.77705 0.90216 0.91600 0.76895 0.82351 0.77554 0.77107 0.94561 0.95627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.52 10.31 55.49 0.57 -25.95 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 3 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.60 -15.01 3.39 -170.08 -0.58 -15.59 16 10 C 0.15 3.54 5.14 -3.06 -0.02 3.53 16 11 C 0.08 1.49 4.08 -24.89 -0.10 1.39 16 12 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 13 O -0.56 -9.83 12.26 -35.23 -0.43 -10.26 16 14 C -0.11 -1.82 2.98 -88.48 -0.26 -2.08 16 15 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 16 C 0.14 2.21 4.61 -4.05 -0.02 2.19 16 17 N -0.72 -9.63 5.49 -61.40 -0.34 -9.96 16 18 C 0.58 8.67 7.81 -12.54 -0.10 8.57 16 19 O -0.54 -10.13 16.98 5.27 0.09 -10.04 16 20 C -0.23 -2.78 6.31 -103.28 -0.65 -3.44 16 21 C -0.17 -1.75 11.01 -37.45 -0.41 -2.17 16 22 C -0.04 -0.36 12.03 29.30 0.35 0.00 16 23 O -0.18 -1.62 10.52 7.64 0.08 -1.54 16 24 C 0.02 0.18 11.61 30.08 0.35 0.53 16 25 C 0.14 2.90 6.64 -2.53 -0.02 2.88 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.05 1.33 7.38 -51.93 -0.38 0.95 16 28 H 0.05 1.28 7.43 -51.93 -0.39 0.90 16 29 H 0.38 5.20 9.12 45.56 0.42 5.62 16 30 H 0.08 1.43 7.56 -51.93 -0.39 1.04 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.40 4.20 7.44 -40.82 -0.30 3.90 16 33 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.21 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.21 1.20 7.47 -52.49 -0.39 0.81 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.55 7.91 -51.93 -0.41 0.14 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -34.85 316.96 -5.91 -40.76 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.94 Total: 6.40 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -1.13 Total: 4.68 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.34 Total: -51.50 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.26 Total: -21.84 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.85 -5.91 -40.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957873989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.147 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds