Wall clock time and date at job start Tue Mar 31 2020 01:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99622 * 2 1 4 4 H 1.48499 * 109.47140 * 270.00211 * 3 2 1 5 5 H 1.48496 * 109.47439 * 30.00438 * 3 2 1 6 6 H 1.48503 * 109.46841 * 150.00273 * 3 2 1 7 7 C 1.38809 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00032 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.47022 * 125.65186 * 0.02640 * 9 7 2 11 11 C 1.54322 * 107.27269 * 178.90274 * 10 9 7 12 12 H 1.09002 * 110.71963 * 219.44477 * 11 10 9 13 13 O 1.42896 * 110.71801 * 96.34675 * 11 10 9 14 14 C 1.55164 * 102.94370 * 337.80987 * 11 10 9 15 15 H 1.09001 * 111.00047 * 277.42887 * 14 11 10 16 16 C 1.52995 * 111.00483 * 153.57714 * 14 11 10 17 17 N 1.46496 * 109.47280 * 175.00152 * 16 14 11 18 18 C 1.34777 * 120.00371 * 179.97438 * 17 16 14 19 19 O 1.21613 * 119.99609 * 359.97438 * 18 17 16 20 20 C 1.47375 * 120.00348 * 179.97438 * 18 17 16 21 21 C 1.47019 * 127.19415 * 179.70502 * 20 18 17 22 22 C 1.34182 * 105.95146 * 179.88908 * 21 20 18 23 23 O 1.34210 * 109.12810 * 0.38336 * 22 21 20 24 24 C 1.33662 * 110.90797 * 359.73998 * 23 22 21 25 25 C 1.47435 * 125.64724 * 179.97438 * 9 7 2 26 26 H 0.96995 * 120.00311 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.87665 * 59.48574 * 10 9 7 28 28 H 1.08996 * 110.00949 * 298.39749 * 10 9 7 29 29 H 0.96702 * 113.99631 * 63.84596 * 13 11 10 30 30 H 1.09004 * 109.46918 * 295.00017 * 16 14 11 31 31 H 1.08997 * 109.47200 * 54.99711 * 16 14 11 32 32 H 0.97005 * 119.99755 * 359.97438 * 17 16 14 33 33 H 1.07998 * 127.02239 * 0.02562 * 21 20 18 34 34 H 1.07997 * 125.43299 * 180.12327 * 22 21 20 35 35 H 1.07994 * 125.80014 * 180.02562 * 24 23 22 36 36 H 1.08997 * 110.36223 * 323.00847 * 25 9 7 37 37 H 1.09005 * 110.35921 * 85.32528 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1375 -2.5328 -0.0006 11 6 -0.4483 -4.0441 -0.0288 12 1 -1.2984 -4.2509 -0.6790 13 8 -0.6924 -4.5347 1.2909 14 6 0.8521 -4.6556 -0.6141 15 1 0.8570 -4.5947 -1.7024 16 6 1.0372 -6.1007 -0.1470 17 7 2.2061 -6.6826 -0.8111 18 6 2.5647 -7.9556 -0.5512 19 8 1.9180 -8.6210 0.2349 20 6 3.7403 -8.5412 -1.2197 21 6 4.2731 -9.9010 -1.0508 22 6 5.3424 -9.9809 -1.8574 23 8 5.5088 -8.8062 -2.4848 24 6 4.5651 -7.9328 -2.1201 25 6 1.9336 -3.7312 -0.0016 26 1 -0.4850 0.8400 0.0004 27 1 -0.5575 -2.0513 -0.8837 28 1 -0.5566 -2.0848 0.9004 29 1 -1.4730 -4.1522 1.7146 30 1 1.1869 -6.1172 0.9325 31 1 0.1495 -6.6807 -0.3996 32 1 2.7221 -6.1518 -1.4379 33 1 3.8822 -10.6777 -0.4103 34 1 5.9715 -10.8503 -1.9789 35 1 4.4713 -6.9180 -2.4776 36 1 2.8330 -3.7398 -0.6172 37 1 2.1666 -4.0428 1.0166 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957873989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:35 Heat of formation + Delta-G solvation = -68.875530 kcal Electronic energy + Delta-G solvation = -21550.755205 eV Core-core repulsion = 18101.579712 eV Total energy + Delta-G solvation = -3449.175493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.44158 -40.70420 -39.69922 -36.41196 -36.08771 -34.12563 -33.66219 -31.65406 -30.53342 -29.37682 -27.28931 -25.65513 -23.94538 -22.36352 -22.19726 -21.45088 -20.84212 -19.38398 -19.08116 -18.08004 -17.23551 -17.08684 -16.80478 -16.61519 -16.18253 -15.76975 -15.66679 -15.37041 -14.88217 -14.48480 -14.38257 -14.17740 -13.82198 -13.57269 -13.31769 -13.12447 -13.06165 -12.67455 -12.34393 -12.09762 -11.90726 -11.77980 -11.60867 -11.11630 -10.84109 -10.78851 -10.72065 -10.14343 -9.70409 -8.90944 -7.85839 -5.21037 0.38047 1.15828 1.47109 1.48588 1.57101 2.01216 2.19802 2.34047 2.49225 3.27231 3.36156 3.56777 3.65638 3.80583 3.90211 3.93696 4.01014 4.16546 4.43207 4.54785 4.60136 4.65753 4.79073 4.84261 4.91535 4.99940 5.05007 5.29717 5.35208 5.40744 5.42657 5.52948 5.70338 6.01588 6.17679 6.52399 6.92384 7.09313 7.18784 7.76027 8.40379 9.24394 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.022819 B = 0.003792 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.772097 B = 7382.197583 C = 8410.659198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.242 4.242 8 H 0.084 0.916 9 N -0.625 5.625 10 C 0.159 3.841 11 C 0.094 3.906 12 H 0.087 0.913 13 O -0.572 6.572 14 C -0.091 4.091 15 H 0.113 0.887 16 C 0.157 3.843 17 N -0.711 5.711 18 C 0.582 3.418 19 O -0.589 6.589 20 C -0.270 4.270 21 C -0.199 4.199 22 C -0.022 4.022 23 O -0.177 6.177 24 C 0.044 3.956 25 C 0.142 3.858 26 H 0.247 0.753 27 H 0.025 0.975 28 H 0.013 0.987 29 H 0.391 0.609 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.413 0.587 33 H 0.154 0.846 34 H 0.249 0.751 35 H 0.246 0.754 36 H 0.056 0.944 37 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.595 -16.729 -7.021 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.196 1.196 7 C -0.371 4.371 8 H 0.102 0.898 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.034 3.966 12 H 0.104 0.896 13 O -0.380 6.380 14 C -0.111 4.111 15 H 0.131 0.869 16 C 0.033 3.967 17 N -0.363 5.363 18 C 0.372 3.628 19 O -0.471 6.471 20 C -0.274 4.274 21 C -0.219 4.219 22 C -0.087 4.087 23 O -0.071 6.071 24 C -0.026 4.026 25 C 0.017 3.983 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.240 0.760 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.172 0.828 34 H 0.265 0.735 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 7.862 -17.258 -6.781 20.140 hybrid contribution -0.508 1.768 0.461 1.897 sum 7.353 -15.490 -6.320 18.274 Atomic orbital electron populations 1.70142 1.06226 1.25282 1.58397 1.25622 0.96642 1.00949 1.02619 0.85081 0.77564 0.79123 0.77572 1.20947 1.22357 1.19597 1.19477 0.91095 0.83648 1.42884 0.89843 1.44698 1.02301 1.01095 1.86999 1.21688 0.84556 0.91782 0.98585 1.22984 0.96834 0.92500 0.84265 0.89554 1.86381 1.52658 1.68961 1.29980 1.22577 0.94898 0.92646 1.00944 0.86932 1.20857 0.87649 0.91484 0.96691 1.45791 1.31188 1.12673 1.46601 1.17673 0.83281 0.81288 0.80592 1.90751 1.56156 1.62173 1.37994 1.21536 1.01118 0.97882 1.06892 1.22966 0.98604 0.96240 1.04096 1.24618 0.99959 0.88646 0.95512 1.83848 1.45709 1.21338 1.56191 1.25066 0.86455 0.96172 0.94924 1.21707 0.95338 0.84275 0.96977 0.94405 0.95730 0.96873 0.75999 0.92814 0.91321 0.75033 0.82838 0.73548 0.73810 0.92594 0.97235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.83 10.31 21.65 0.22 -55.61 16 2 C -0.07 -3.65 5.49 84.86 0.47 -3.18 16 3 Si 0.98 44.87 29.55 68.60 2.03 46.90 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.24 -13.26 10.28 84.03 0.86 -12.40 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -31.15 3.39 -692.00 -2.35 -33.49 16 10 C 0.16 7.51 5.14 86.73 0.45 7.95 16 11 C 0.09 3.29 4.08 31.78 0.13 3.42 16 12 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 13 O -0.57 -19.58 12.26 -148.98 -1.83 -21.41 16 14 C -0.09 -2.86 2.98 -9.41 -0.03 -2.89 16 15 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 16 C 0.16 4.69 4.61 86.38 0.40 5.08 16 17 N -0.71 -17.75 5.49 -466.43 -2.56 -20.32 16 18 C 0.58 16.97 7.81 86.65 0.68 17.65 16 19 O -0.59 -22.50 16.98 -4.07 -0.07 -22.57 16 20 C -0.27 -6.10 6.31 -18.99 -0.12 -6.22 16 21 C -0.20 -4.00 11.01 23.65 0.26 -3.74 16 22 C -0.02 -0.29 12.03 66.89 0.80 0.51 16 23 O -0.18 -2.65 10.52 4.44 0.05 -2.61 16 24 C 0.04 0.68 11.61 67.40 0.78 1.46 16 25 C 0.14 5.55 6.64 86.85 0.58 6.12 16 26 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 27 H 0.02 1.28 7.38 -2.39 -0.02 1.26 16 28 H 0.01 0.70 7.43 -2.39 -0.02 0.69 16 29 H 0.39 10.66 9.12 -74.06 -0.68 9.98 16 30 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 31 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.41 7.55 7.44 -92.70 -0.69 6.86 16 33 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.25 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.25 1.74 7.47 -2.91 -0.02 1.72 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.01 0.42 7.91 -2.38 -0.02 0.40 16 Total: -1.00 -77.94 316.96 0.49 -77.45 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.26 Total: 17.88 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 5.26 Total: 13.78 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.69 Total: -109.42 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -1.85 Total: -46.59 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -77.94 0.49 -77.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957873989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.572 kcal (2) G-P(sol) polarization free energy of solvation -77.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds