Wall clock time and date at job start Tue Mar 31 2020 01:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47244 * 274.98746 * 3 2 1 5 5 H 1.48499 * 109.47154 * 34.98793 * 3 2 1 6 6 H 1.48502 * 109.47322 * 154.98623 * 3 2 1 7 7 C 1.38817 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99478 * 186.82226 * 7 2 1 9 9 N 1.36935 * 120.00360 * 6.82796 * 7 2 1 10 10 C 1.47022 * 125.64544 * 353.84773 * 9 7 2 11 11 C 1.54323 * 107.26675 * 181.09622 * 10 9 7 12 12 H 1.09001 * 110.72072 * 263.83037 * 11 10 9 13 13 O 1.42907 * 110.71990 * 140.55693 * 11 10 9 14 14 C 1.55147 * 102.94568 * 22.19488 * 11 10 9 15 15 H 1.09005 * 111.04056 * 82.58067 * 14 11 10 16 16 C 1.53002 * 111.00760 * 206.42466 * 14 11 10 17 17 N 1.46503 * 109.47181 * 178.64857 * 16 14 11 18 18 C 1.34771 * 119.99672 * 180.27232 * 17 16 14 19 19 O 1.21616 * 120.00425 * 359.72610 * 18 17 16 20 20 C 1.47382 * 120.00024 * 179.72264 * 18 17 16 21 21 C 1.47021 * 127.19255 * 180.02562 * 20 18 17 22 22 C 1.34186 * 105.95374 * 180.02562 * 21 20 18 23 23 O 1.34217 * 109.12240 * 359.97438 * 22 21 20 24 24 C 1.33655 * 110.90797 * 359.72461 * 23 22 21 25 25 C 1.47423 * 125.64805 * 173.89108 * 9 7 2 26 26 H 0.96996 * 119.99651 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.88226 * 300.51515 * 10 9 7 28 28 H 1.09001 * 109.88109 * 61.52617 * 10 9 7 29 29 H 0.96707 * 113.99711 * 66.47625 * 13 11 10 30 30 H 1.08995 * 109.47400 * 58.64467 * 16 14 11 31 31 H 1.09001 * 109.46583 * 298.64590 * 16 14 11 32 32 H 0.97001 * 120.00085 * 359.97438 * 17 16 14 33 33 H 1.08000 * 127.02403 * 0.02562 * 21 20 18 34 34 H 1.07994 * 125.43716 * 179.97438 * 22 21 20 35 35 H 1.08000 * 125.80328 * 180.28008 * 24 23 22 36 36 H 1.09001 * 110.36582 * 36.99953 * 25 9 7 37 37 H 1.08996 * 110.45990 * 274.72073 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2056 0.1106 9 7 1.3328 -2.3839 -0.1420 10 6 -0.1293 -2.5348 -0.1738 11 6 -0.4312 -4.0411 -0.3202 12 1 -0.6020 -4.3004 -1.3651 13 8 -1.5524 -4.4126 0.4842 14 6 0.8669 -4.7085 0.2058 15 1 0.8611 -4.7718 1.2939 16 6 1.0655 -6.0905 -0.4200 17 7 2.3144 -6.6755 0.0742 18 6 2.7005 -7.8957 -0.3483 19 8 2.0096 -8.5133 -1.1359 20 6 3.9599 -8.4816 0.1441 21 6 4.5292 -9.7903 -0.2092 22 6 5.6767 -9.8913 0.4790 23 8 5.8523 -8.7774 1.2070 24 6 4.8443 -7.9204 1.0181 25 6 1.9489 -3.7153 -0.2869 26 1 -0.4849 0.8400 0.0004 27 1 -0.5610 -2.1586 0.7536 28 1 -0.5400 -1.9878 -1.0225 29 1 -2.3891 -4.0216 0.1973 30 1 1.1133 -5.9948 -1.5047 31 1 0.2298 -6.7356 -0.1487 32 1 2.8656 -6.1828 0.7021 33 1 4.1096 -10.5211 -0.8846 34 1 6.3512 -10.7342 0.4515 35 1 4.7449 -6.9499 1.4815 36 1 2.8423 -3.7894 0.3332 37 1 2.1952 -3.9097 -1.3307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957873990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:39 Heat of formation + Delta-G solvation = -42.866353 kcal Electronic energy + Delta-G solvation = -21477.757079 eV Core-core repulsion = 18029.709429 eV Total energy + Delta-G solvation = -3448.047650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.72687 -39.49601 -38.16983 -35.19046 -34.64905 -33.09671 -32.21478 -30.42692 -29.35359 -27.58926 -25.71100 -24.16152 -22.76412 -21.65556 -20.60737 -20.15503 -19.76553 -18.51195 -17.00202 -16.77247 -16.35211 -16.20871 -15.70685 -15.24812 -14.97603 -14.73022 -14.17888 -13.88338 -13.34962 -13.15501 -13.10956 -12.68733 -12.65686 -12.41864 -12.03106 -11.53034 -11.25514 -11.01960 -10.85466 -10.62390 -10.17240 -10.06845 -10.01131 -9.86032 -9.81186 -9.25431 -9.10919 -8.92369 -8.67207 -6.93719 -5.80831 -3.14525 1.17982 1.88112 2.70147 3.16848 3.34074 3.35544 3.40750 3.42863 4.37848 4.41126 4.49774 4.69615 4.86907 5.00965 5.17184 5.31749 5.39747 5.44472 5.46457 5.64696 5.69073 5.83830 5.99325 6.01578 6.06554 6.17642 6.31945 6.38876 6.51545 6.71842 6.78180 7.36413 7.45166 7.51966 7.70936 8.15123 8.16556 8.22719 9.11428 9.72305 10.36944 11.31145 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.003841 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.668638 B = 7287.970588 C = 8379.699187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.083 3.917 12 H 0.057 0.943 13 O -0.567 6.567 14 C -0.109 4.109 15 H 0.090 0.910 16 C 0.135 3.865 17 N -0.720 5.720 18 C 0.584 3.416 19 O -0.541 6.541 20 C -0.233 4.233 21 C -0.166 4.166 22 C -0.044 4.044 23 O -0.175 6.175 24 C 0.022 3.978 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.376 0.624 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.159 0.841 34 H 0.208 0.792 35 H 0.213 0.787 36 H 0.041 0.959 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -15.976 1.657 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.025 3.975 11 C 0.023 3.977 12 H 0.075 0.925 13 O -0.372 6.372 14 C -0.128 4.128 15 H 0.108 0.892 16 C 0.011 3.989 17 N -0.371 5.371 18 C 0.371 3.629 19 O -0.419 6.419 20 C -0.237 4.237 21 C -0.185 4.185 22 C -0.110 4.110 23 O -0.070 6.070 24 C -0.049 4.049 25 C 0.015 3.985 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.223 0.777 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.233 0.767 33 H 0.177 0.823 34 H 0.225 0.775 35 H 0.229 0.771 36 H 0.059 0.941 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.189 -16.468 1.606 18.041 hybrid contribution 0.092 1.493 -0.168 1.505 sum 7.281 -14.975 1.438 16.713 Atomic orbital electron populations 1.69956 1.04987 1.25219 1.56508 1.24840 0.95733 0.97798 1.01861 0.86092 0.78672 0.83405 0.77547 1.21542 1.21711 1.20569 1.19068 0.91121 0.82380 1.43539 0.90233 1.44301 1.01287 1.01170 1.86183 1.21844 0.85280 0.88556 1.01793 1.23111 0.84944 0.97111 0.92499 0.92463 1.86423 1.18561 1.74161 1.58007 1.22619 0.96229 0.92644 1.01335 0.89219 1.21388 0.85198 0.93435 0.98848 1.45881 1.25295 1.17994 1.47914 1.17260 0.83970 0.80890 0.80751 1.90779 1.55094 1.61277 1.34759 1.21600 0.98758 0.97971 1.05410 1.22797 0.95705 0.96895 1.03118 1.23942 1.00088 0.90285 0.96649 1.83799 1.42577 1.24871 1.55754 1.24534 0.86367 0.95411 0.98576 1.21601 0.93907 0.85513 0.97462 0.93645 0.92772 0.93275 0.77681 0.91235 0.91037 0.76665 0.82348 0.77540 0.77074 0.94078 0.95804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.39 10.36 55.49 0.57 -25.81 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 3 Si 0.91 21.61 29.56 -169.99 -5.02 16.58 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.23 -6.31 10.26 -15.06 -0.15 -6.47 16 8 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 9 N -0.60 -14.83 3.39 -170.07 -0.58 -15.41 16 10 C 0.15 3.53 5.16 -3.06 -0.02 3.51 16 11 C 0.08 1.53 3.80 -24.90 -0.09 1.44 16 12 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 13 O -0.57 -9.71 13.39 -35.23 -0.47 -10.19 16 14 C -0.11 -1.83 2.83 -88.47 -0.25 -2.08 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 16 C 0.13 2.02 5.12 -4.04 -0.02 1.99 16 17 N -0.72 -9.43 5.40 -61.40 -0.33 -9.76 16 18 C 0.58 8.51 7.81 -12.54 -0.10 8.41 16 19 O -0.54 -9.88 16.98 5.26 0.09 -9.79 16 20 C -0.23 -2.76 6.31 -103.27 -0.65 -3.41 16 21 C -0.17 -1.73 11.01 -37.45 -0.41 -2.14 16 22 C -0.04 -0.35 12.03 29.30 0.35 0.00 16 23 O -0.18 -1.61 10.52 7.64 0.08 -1.53 16 24 C 0.02 0.20 11.61 30.08 0.35 0.55 16 25 C 0.14 2.73 6.41 -2.53 -0.02 2.71 16 26 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 27 H 0.05 1.43 7.46 -51.93 -0.39 1.04 16 28 H 0.05 1.27 7.36 -51.93 -0.38 0.88 16 29 H 0.38 4.99 9.12 45.56 0.42 5.41 16 30 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.40 4.25 7.31 -40.82 -0.30 3.95 16 33 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.21 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.21 1.22 7.47 -52.49 -0.39 0.83 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.02 0.47 8.00 -51.93 -0.42 0.05 16 LS Contribution 318.32 15.07 4.80 4.80 Total: -1.00 -34.54 318.32 -5.93 -40.47 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -3.96 Total: 6.38 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -1.11 Total: 4.26 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.33 Total: -50.99 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.30 Total: -21.50 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.54 -5.93 -40.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957873990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.394 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds