Wall clock time and date at job start Tue Mar 31 2020 01:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00058 * 2 1 4 4 H 1.48501 * 109.47244 * 274.98746 * 3 2 1 5 5 H 1.48499 * 109.47154 * 34.98793 * 3 2 1 6 6 H 1.48502 * 109.47322 * 154.98623 * 3 2 1 7 7 C 1.38817 * 119.99667 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99478 * 186.82226 * 7 2 1 9 9 N 1.36935 * 120.00360 * 6.82796 * 7 2 1 10 10 C 1.47022 * 125.64544 * 353.84773 * 9 7 2 11 11 C 1.54323 * 107.26675 * 181.09622 * 10 9 7 12 12 H 1.09001 * 110.72072 * 263.83037 * 11 10 9 13 13 O 1.42907 * 110.71990 * 140.55693 * 11 10 9 14 14 C 1.55147 * 102.94568 * 22.19488 * 11 10 9 15 15 H 1.09005 * 111.04056 * 82.58067 * 14 11 10 16 16 C 1.53002 * 111.00760 * 206.42466 * 14 11 10 17 17 N 1.46503 * 109.47181 * 178.64857 * 16 14 11 18 18 C 1.34771 * 119.99672 * 180.27232 * 17 16 14 19 19 O 1.21616 * 120.00425 * 359.72610 * 18 17 16 20 20 C 1.47382 * 120.00024 * 179.72264 * 18 17 16 21 21 C 1.47021 * 127.19255 * 180.02562 * 20 18 17 22 22 C 1.34186 * 105.95374 * 180.02562 * 21 20 18 23 23 O 1.34217 * 109.12240 * 359.97438 * 22 21 20 24 24 C 1.33655 * 110.90797 * 359.72461 * 23 22 21 25 25 C 1.47423 * 125.64805 * 173.89108 * 9 7 2 26 26 H 0.96996 * 119.99651 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.88226 * 300.51515 * 10 9 7 28 28 H 1.09001 * 109.88109 * 61.52617 * 10 9 7 29 29 H 0.96707 * 113.99711 * 66.47625 * 13 11 10 30 30 H 1.08995 * 109.47400 * 58.64467 * 16 14 11 31 31 H 1.09001 * 109.46583 * 298.64590 * 16 14 11 32 32 H 0.97001 * 120.00085 * 359.97438 * 17 16 14 33 33 H 1.08000 * 127.02403 * 0.02562 * 21 20 18 34 34 H 1.07994 * 125.43716 * 179.97438 * 22 21 20 35 35 H 1.08000 * 125.80328 * 180.28008 * 24 23 22 36 36 H 1.09001 * 110.36582 * 36.99953 * 25 9 7 37 37 H 1.08996 * 110.45990 * 274.72073 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 -0.0005 8 1 3.0845 -1.2056 0.1106 9 7 1.3328 -2.3839 -0.1420 10 6 -0.1293 -2.5348 -0.1738 11 6 -0.4312 -4.0411 -0.3202 12 1 -0.6020 -4.3004 -1.3651 13 8 -1.5524 -4.4126 0.4842 14 6 0.8669 -4.7085 0.2058 15 1 0.8611 -4.7718 1.2939 16 6 1.0655 -6.0905 -0.4200 17 7 2.3144 -6.6755 0.0742 18 6 2.7005 -7.8957 -0.3483 19 8 2.0096 -8.5133 -1.1359 20 6 3.9599 -8.4816 0.1441 21 6 4.5292 -9.7903 -0.2092 22 6 5.6767 -9.8913 0.4790 23 8 5.8523 -8.7774 1.2070 24 6 4.8443 -7.9204 1.0181 25 6 1.9489 -3.7153 -0.2869 26 1 -0.4849 0.8400 0.0004 27 1 -0.5610 -2.1586 0.7536 28 1 -0.5400 -1.9878 -1.0225 29 1 -2.3891 -4.0216 0.1973 30 1 1.1133 -5.9948 -1.5047 31 1 0.2298 -6.7356 -0.1487 32 1 2.8656 -6.1828 0.7021 33 1 4.1096 -10.5211 -0.8846 34 1 6.3512 -10.7342 0.4515 35 1 4.7449 -6.9499 1.4815 36 1 2.8423 -3.7894 0.3332 37 1 2.1952 -3.9097 -1.3307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957873990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:38 Heat of formation + Delta-G solvation = -70.474967 kcal Electronic energy + Delta-G solvation = -21478.954279 eV Core-core repulsion = 18029.709429 eV Total energy + Delta-G solvation = -3449.244850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.44381 -40.71592 -39.66484 -36.65364 -36.10969 -34.18636 -33.68403 -31.68598 -30.53060 -29.25272 -27.31134 -25.62333 -23.96081 -22.36611 -22.23498 -21.53485 -20.90371 -19.43544 -18.84204 -18.20724 -17.24119 -17.17020 -17.06566 -16.56919 -16.29498 -15.81905 -15.70898 -15.42568 -14.68130 -14.43485 -14.35145 -14.01910 -13.82026 -13.68044 -13.31772 -13.23098 -13.09542 -12.74497 -12.45377 -12.27566 -11.91845 -11.78463 -11.52727 -11.17890 -10.84352 -10.82496 -10.70842 -10.17297 -9.70781 -8.92975 -7.87549 -5.22995 0.37417 1.15771 1.47328 1.48992 1.57599 1.99485 2.17695 2.32889 2.48325 3.22489 3.35115 3.56557 3.61666 3.72646 3.81497 3.89144 4.14403 4.15359 4.39339 4.45357 4.55738 4.63205 4.74499 4.79377 4.87783 4.95545 5.04189 5.25779 5.34603 5.37344 5.44834 5.47298 5.70487 6.01502 6.16389 6.49872 6.87777 7.06740 7.15920 7.73856 8.37757 9.23184 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.021085 B = 0.003841 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.668638 B = 7287.970588 C = 8379.699187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.065 4.065 3 Si 0.978 3.022 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.264 1.264 7 C -0.244 4.244 8 H 0.089 0.911 9 N -0.625 5.625 10 C 0.160 3.840 11 C 0.096 3.904 12 H 0.074 0.926 13 O -0.570 6.570 14 C -0.089 4.089 15 H 0.090 0.910 16 C 0.148 3.852 17 N -0.710 5.710 18 C 0.584 3.416 19 O -0.587 6.587 20 C -0.270 4.270 21 C -0.198 4.198 22 C -0.023 4.023 23 O -0.177 6.177 24 C 0.044 3.956 25 C 0.139 3.861 26 H 0.247 0.753 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.393 0.607 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.413 0.587 33 H 0.155 0.845 34 H 0.248 0.752 35 H 0.245 0.755 36 H 0.062 0.938 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.243 -16.989 2.428 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.258 4.258 3 Si 0.806 3.194 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.352 5.352 10 C 0.034 3.966 11 C 0.036 3.964 12 H 0.092 0.908 13 O -0.377 6.377 14 C -0.109 4.109 15 H 0.108 0.892 16 C 0.024 3.976 17 N -0.361 5.361 18 C 0.374 3.626 19 O -0.469 6.469 20 C -0.274 4.274 21 C -0.218 4.218 22 C -0.088 4.088 23 O -0.071 6.071 24 C -0.027 4.027 25 C 0.014 3.986 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.243 0.757 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.250 0.750 33 H 0.173 0.827 34 H 0.264 0.736 35 H 0.261 0.739 36 H 0.080 0.920 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.408 -17.497 2.398 20.010 hybrid contribution -0.559 1.766 -0.386 1.892 sum 8.849 -15.731 2.012 18.160 Atomic orbital electron populations 1.70172 1.06398 1.25333 1.57986 1.25680 0.96585 1.01123 1.02457 0.85069 0.78003 0.79169 0.77163 1.21620 1.22383 1.18858 1.19509 0.91823 0.83557 1.42333 0.89306 1.44605 1.02009 1.02560 1.86020 1.21606 0.84872 0.91716 0.98408 1.22887 0.86163 0.93592 0.93759 0.90838 1.86392 1.19186 1.73982 1.58112 1.22417 0.94368 0.92879 1.01231 0.89211 1.21111 0.86081 0.92068 0.98369 1.45722 1.24754 1.17794 1.47864 1.17639 0.84428 0.80652 0.79918 1.90749 1.56715 1.62460 1.36969 1.21529 0.98706 0.99380 1.07794 1.22966 0.97161 0.96942 1.04711 1.24629 0.99380 0.90353 0.94436 1.83849 1.42373 1.25209 1.55693 1.25057 0.85022 0.95930 0.96688 1.21782 0.95107 0.83535 0.98143 0.94404 0.96550 0.96632 0.75741 0.91701 0.91320 0.75039 0.82731 0.73565 0.73949 0.92026 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.10 10.36 21.65 0.22 -55.87 16 2 C -0.07 -3.63 5.48 84.86 0.47 -3.16 16 3 Si 0.98 44.61 29.56 68.60 2.03 46.64 16 4 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.24 -13.14 10.26 84.04 0.86 -12.27 16 8 H 0.09 4.50 7.84 -2.91 -0.02 4.47 16 9 N -0.62 -30.73 3.39 -691.99 -2.35 -33.08 16 10 C 0.16 7.65 5.16 86.73 0.45 8.10 16 11 C 0.10 3.47 3.80 31.78 0.12 3.59 16 12 H 0.07 2.44 8.04 -2.39 -0.02 2.43 16 13 O -0.57 -18.96 13.39 -148.98 -1.99 -20.96 16 14 C -0.09 -2.87 2.83 -9.40 -0.03 -2.89 16 15 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 16 C 0.15 4.19 5.12 86.38 0.44 4.63 16 17 N -0.71 -17.31 5.40 -466.41 -2.52 -19.82 16 18 C 0.58 16.50 7.81 86.65 0.68 17.17 16 19 O -0.59 -21.55 16.98 -4.08 -0.07 -21.62 16 20 C -0.27 -5.98 6.31 -18.99 -0.12 -6.10 16 21 C -0.20 -3.88 11.01 23.65 0.26 -3.62 16 22 C -0.02 -0.30 12.03 66.89 0.80 0.51 16 23 O -0.18 -2.66 10.52 4.42 0.05 -2.61 16 24 C 0.04 0.67 11.61 67.39 0.78 1.45 16 25 C 0.14 5.14 6.41 86.86 0.56 5.70 16 26 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 27 H 0.02 0.89 7.46 -2.39 -0.02 0.88 16 28 H 0.02 0.83 7.36 -2.39 -0.02 0.82 16 29 H 0.39 10.13 9.12 -74.05 -0.68 9.45 16 30 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 31 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.41 7.64 7.31 -92.71 -0.68 6.97 16 33 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 34 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.24 1.82 7.47 -2.91 -0.02 1.79 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.03 1.06 8.00 -2.39 -0.02 1.04 16 Total: -1.00 -76.58 318.32 0.40 -76.18 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.25 Total: 18.04 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.27 Total: 13.10 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -4.64 Total: -108.77 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -2.02 Total: -45.19 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -76.58 0.40 -76.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957873990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.705 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds