Wall clock time and date at job start Tue Mar 31 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99985 * 2 1 4 4 H 1.48503 * 109.46963 * 270.00005 * 3 2 1 5 5 H 1.48501 * 109.46947 * 29.99637 * 3 2 1 6 6 H 1.48496 * 109.47250 * 149.99867 * 3 2 1 7 7 C 1.38815 * 119.99956 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99890 * 189.10054 * 7 2 1 9 9 N 1.36938 * 120.00144 * 9.10136 * 7 2 1 10 10 C 1.48146 * 127.83468 * 15.57931 * 9 7 2 11 11 C 1.54397 * 104.61474 * 140.39383 * 10 9 7 12 12 H 1.08997 * 117.61571 * 242.76156 * 11 10 9 13 13 C 1.54281 * 104.95831 * 23.86695 * 11 10 9 14 14 H 1.09002 * 121.81282 * 222.17275 * 13 11 10 15 15 C 1.48141 * 127.83925 * 195.55555 * 9 7 2 16 16 C 1.52997 * 59.72319 * 114.13712 * 13 11 10 17 17 H 1.08997 * 117.41030 * 252.33357 * 16 13 11 18 18 N 1.46503 * 117.44444 * 107.64274 * 16 13 11 19 19 C 1.34778 * 119.99917 * 135.75837 * 18 16 13 20 20 O 1.21738 * 119.99955 * 0.02562 * 19 18 16 21 21 C 1.46372 * 119.99968 * 180.02562 * 19 18 16 22 22 C 1.33977 * 119.23473 * 0.02562 * 21 19 18 23 23 O 1.34995 * 121.68878 * 180.35008 * 22 21 19 24 24 C 1.43249 * 116.76738 * 342.81069 * 23 22 21 25 25 C 1.53558 * 108.08252 * 45.49170 * 24 23 22 26 26 O 1.36220 * 119.23245 * 179.72965 * 21 19 18 27 27 H 0.97001 * 119.99692 * 0.02562 * 1 2 3 28 28 H 1.08996 * 110.41422 * 21.61202 * 10 9 7 29 29 H 1.08997 * 110.41243 * 259.17456 * 10 9 7 30 30 H 1.08991 * 110.40969 * 100.82469 * 15 9 7 31 31 H 1.09001 * 110.40652 * 338.39082 * 15 9 7 32 32 H 0.96997 * 120.00184 * 315.76705 * 18 16 13 33 33 H 1.08000 * 119.15268 * 0.36224 * 22 21 19 34 34 H 1.09000 * 109.73696 * 165.13673 * 24 23 22 35 35 H 1.08994 * 109.73862 * 285.80026 * 24 23 22 36 36 H 1.09005 * 109.75272 * 61.47689 * 25 24 23 37 37 H 1.08998 * 109.75020 * 182.16779 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2022 0.0005 8 1 3.0801 -1.2080 0.1485 9 7 1.3386 -2.3807 -0.1865 10 6 -0.0340 -2.5711 -0.7103 11 6 0.0642 -3.8171 -1.6167 12 1 -0.1479 -3.6879 -2.6780 13 6 1.2865 -4.5974 -1.0899 14 1 2.0101 -5.0553 -1.7643 15 6 1.8198 -3.7546 0.0885 16 6 -0.1179 -5.1932 -0.9731 17 1 -0.5671 -5.2281 0.0193 18 7 -0.4520 -6.3129 -1.8568 19 6 -1.1024 -7.3870 -1.3671 20 8 -1.4127 -7.4265 -0.1906 21 6 -1.4357 -8.5060 -2.2499 22 6 -1.0865 -8.4466 -3.5419 23 8 -1.3751 -9.4469 -4.4012 24 6 -1.7187 -10.7129 -3.8256 25 6 -2.7148 -10.4628 -2.6840 26 8 -2.0884 -9.5861 -1.7372 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3432 -1.7021 -1.2912 29 1 -0.7316 -2.7503 0.1077 30 1 1.4117 -4.1186 1.0313 31 1 2.9093 -3.7784 0.1105 32 1 -0.2050 -6.2813 -2.7943 33 1 -0.5604 -7.5762 -3.9053 34 1 -2.1780 -11.3488 -4.5824 35 1 -0.8227 -11.1946 -3.4344 36 1 -3.6190 -9.9995 -3.0790 37 1 -2.9657 -11.4070 -2.2007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958135004.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:41 Heat of formation + Delta-G solvation = -42.283155 kcal Electronic energy + Delta-G solvation = -21408.969734 eV Core-core repulsion = 17960.947374 eV Total energy + Delta-G solvation = -3448.022361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.15224 -40.96405 -39.69979 -37.98933 -36.15375 -34.69814 -33.09878 -31.88863 -29.78463 -28.92282 -27.56453 -26.38062 -24.07411 -22.70521 -22.05470 -20.91119 -20.54135 -19.43394 -19.33546 -18.82780 -17.54327 -17.33430 -16.71484 -16.68008 -16.06068 -15.78988 -15.54721 -15.30542 -15.12262 -15.03741 -14.64313 -14.40365 -13.75157 -13.34992 -13.32227 -13.12422 -12.89466 -12.70519 -12.15698 -12.02985 -11.98843 -11.88718 -11.71851 -11.67613 -11.09166 -10.85284 -10.70451 -9.86352 -9.27229 -8.92207 -7.91158 -5.28248 0.18468 1.41183 1.48476 1.50683 1.59209 1.97792 2.19243 2.48457 2.64058 2.84844 3.29235 3.39092 3.55998 3.66454 3.81651 3.86614 3.96542 3.98822 4.13128 4.24896 4.38597 4.43766 4.52222 4.64107 4.74749 4.83169 4.88424 4.99870 5.27294 5.36576 5.44442 5.51304 5.65196 5.75207 6.15573 6.17335 6.49482 7.00729 7.06284 7.67569 8.45862 9.22758 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.050372 B = 0.003037 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.725855 B = 9217.608631 C = 9324.624225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.983 3.017 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.241 4.241 8 H 0.084 0.916 9 N -0.616 5.616 10 C 0.187 3.813 11 C -0.174 4.174 12 H 0.134 0.866 13 C -0.162 4.162 14 H 0.142 0.858 15 C 0.147 3.853 16 C 0.114 3.886 17 H 0.104 0.896 18 N -0.671 5.671 19 C 0.575 3.425 20 O -0.577 6.577 21 C -0.100 4.100 22 C 0.046 3.954 23 O -0.304 6.304 24 C 0.011 3.989 25 C 0.010 3.990 26 O -0.323 6.323 27 H 0.250 0.750 28 H 0.061 0.939 29 H -0.006 1.006 30 H 0.017 0.983 31 H 0.066 0.934 32 H 0.418 0.582 33 H 0.207 0.793 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 -22.004 -13.188 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.811 3.189 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.192 1.192 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.340 5.340 10 C 0.061 3.939 11 C -0.195 4.195 12 H 0.152 0.848 13 C -0.183 4.183 14 H 0.159 0.841 15 C 0.021 3.979 16 C 0.007 3.993 17 H 0.122 0.878 18 N -0.323 5.323 19 C 0.364 3.636 20 O -0.457 6.457 21 C -0.149 4.149 22 C -0.021 4.021 23 O -0.216 6.216 24 C -0.063 4.063 25 C -0.065 4.065 26 O -0.238 6.238 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.012 0.988 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.257 0.743 33 H 0.224 0.776 34 H 0.175 0.825 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.580 -21.857 -12.344 25.234 hybrid contribution 0.060 1.020 0.106 1.028 sum -2.519 -20.837 -12.238 24.296 Atomic orbital electron populations 1.70105 1.06594 1.25801 1.57104 1.25780 0.96503 1.01397 1.01992 0.85018 0.77654 0.78637 0.77633 1.20905 1.22275 1.19207 1.19413 0.91446 0.83424 1.42695 0.89841 1.45479 1.13759 1.01127 1.73684 1.20823 0.86042 0.93850 0.93221 1.24372 1.03513 0.90648 1.00933 0.84803 1.24310 0.90894 1.01373 1.01678 0.84066 1.21267 0.98140 0.84420 0.94058 1.21393 0.98177 0.84763 0.94963 0.87771 1.44864 1.58047 1.16178 1.13240 1.17561 0.77424 0.81768 0.86807 1.90835 1.55019 1.80955 1.18930 1.19998 1.08559 0.92541 0.93762 1.23536 0.96754 0.93865 0.87958 1.86115 1.81802 1.19852 1.33800 1.24062 1.00147 0.83441 0.98657 1.24047 0.95328 0.95760 0.91364 1.86411 1.67683 1.34101 1.35572 0.94087 0.92015 0.98777 0.96516 0.91568 0.74257 0.77627 0.82469 0.89347 0.90056 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.27 10.87 21.65 0.24 -57.04 16 2 C -0.06 -3.58 5.40 84.86 0.46 -3.12 16 3 Si 0.98 45.34 29.56 68.60 2.03 47.37 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.24 -13.51 10.35 84.03 0.87 -12.64 16 8 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 9 N -0.62 -32.01 3.38 -688.17 -2.33 -34.34 16 10 C 0.19 9.23 5.70 86.54 0.49 9.72 16 11 C -0.17 -6.23 7.06 -9.89 -0.07 -6.30 16 12 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 13 C -0.16 -5.36 7.06 -9.89 -0.07 -5.43 16 14 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 15 C 0.15 6.16 7.04 86.54 0.61 6.77 16 16 C 0.11 3.76 5.98 44.99 0.27 4.03 16 17 H 0.10 4.18 7.40 -2.39 -0.02 4.16 16 18 N -0.67 -16.87 5.49 -446.77 -2.45 -19.33 16 19 C 0.57 17.50 7.73 86.36 0.67 18.16 16 20 O -0.58 -23.86 16.48 10.08 0.17 -23.69 16 21 C -0.10 -2.37 6.61 23.42 0.15 -2.22 16 22 C 0.05 0.72 10.57 66.85 0.71 1.43 16 23 O -0.30 -4.21 10.47 -69.17 -0.72 -4.93 16 24 C 0.01 0.10 7.29 72.17 0.53 0.62 16 25 C 0.01 0.12 7.32 72.17 0.53 0.65 16 26 O -0.32 -8.05 10.29 -71.84 -0.74 -8.79 16 27 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.06 3.40 6.51 -2.39 -0.02 3.39 16 29 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.42 6.76 6.67 -92.71 -0.62 6.14 16 33 H 0.21 1.83 6.08 -2.91 -0.02 1.82 16 34 H 0.16 0.23 8.14 -2.39 -0.02 0.22 16 35 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 37 H 0.15 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -79.63 312.05 1.81 -77.81 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.48 Total: 11.25 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.14 Total: 11.67 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -4.54 Total: -110.70 kcal Atomic # 8 Polarization: -36.11 SS G_CDS: -1.30 Total: -37.41 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -79.63 1.81 -77.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958135004.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.531 kcal (2) G-P(sol) polarization free energy of solvation -79.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds