Wall clock time and date at job start Tue Mar 31 2020 01:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48499 * 109.47238 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.46796 * 239.99589 * 3 2 1 6 6 H 1.48504 * 109.47019 * 119.99958 * 3 2 1 7 7 C 1.38812 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99889 * 206.50852 * 7 2 1 9 9 N 1.36928 * 120.00090 * 26.50724 * 7 2 1 10 10 C 1.43464 * 118.94256 * 207.14914 * 9 7 2 11 11 C 1.53796 * 107.96114 * 273.61113 * 10 9 7 12 12 C 1.47137 * 111.84151 * 281.66696 * 11 10 9 13 13 N 1.48218 * 110.34476 * 58.29079 * 12 11 10 14 14 C 1.34776 * 119.96452 * 102.47100 * 13 12 11 15 15 O 1.21275 * 120.00194 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99649 * 180.02562 * 14 13 12 17 17 C 1.53001 * 109.47378 * 180.02562 * 16 14 13 18 18 F 1.39900 * 109.46934 * 59.99775 * 17 16 14 19 19 F 1.39894 * 109.47185 * 180.02562 * 17 16 14 20 20 F 1.39904 * 109.46621 * 300.00125 * 17 16 14 21 21 C 1.43619 * 120.05898 * 282.49474 * 13 12 11 22 22 C 1.48859 * 118.93944 * 26.87536 * 9 7 2 23 23 H 0.96999 * 119.99502 * 185.78644 * 1 2 3 24 24 H 1.09004 * 109.76324 * 33.22463 * 10 9 7 25 25 H 1.08999 * 109.76572 * 153.93981 * 10 9 7 26 26 H 1.09000 * 109.00663 * 42.26850 * 11 10 9 27 27 H 1.09001 * 109.01011 * 161.13296 * 11 10 9 28 28 H 1.09002 * 109.32601 * 178.56168 * 12 11 10 29 29 H 1.09008 * 109.32067 * 298.20227 * 12 11 10 30 30 H 1.09005 * 109.47556 * 300.00125 * 16 14 13 31 31 H 1.09003 * 109.47379 * 60.00027 * 16 14 13 32 32 H 1.08999 * 108.86836 * 211.44104 * 21 13 12 33 33 H 1.08994 * 108.88087 * 329.98281 * 21 13 12 34 34 H 1.09001 * 109.48325 * 260.62545 * 22 9 7 35 35 H 1.09000 * 109.47886 * 20.66341 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1040 1.6964 -1.2125 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0051 -1.2511 0.4180 9 7 1.4336 -2.3259 -0.5282 10 6 1.8364 -3.6111 -0.0340 11 6 3.0771 -4.0563 -0.8264 12 6 2.7202 -4.5747 -2.1564 13 7 1.9915 -3.5437 -2.9328 14 6 2.6302 -2.8494 -3.8953 15 8 3.8005 -3.0687 -4.1260 16 6 1.8902 -1.8006 -4.6848 17 6 2.8378 -1.1675 -5.7056 18 9 3.3146 -2.1551 -6.5743 19 9 2.1509 -0.1935 -6.4381 20 9 3.9146 -0.5748 -5.0374 21 6 0.6056 -3.2837 -2.6600 22 6 0.4044 -2.1745 -1.5930 23 1 -0.4849 -0.8358 0.0847 24 1 2.0824 -3.5381 1.0254 25 1 1.0297 -4.3301 -0.1762 26 1 3.7468 -3.2046 -0.9454 27 1 3.5929 -4.8379 -0.2686 28 1 3.6286 -4.8536 -2.6905 29 1 2.0847 -5.4531 -2.0425 30 1 1.0514 -2.2624 -5.2058 31 1 1.5183 -1.0313 -4.0079 32 1 0.1160 -2.9771 -3.5843 33 1 0.1386 -4.2009 -2.3015 34 1 -0.5891 -2.2641 -1.1537 35 1 0.5078 -1.1959 -2.0619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980790011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:57 Heat of formation + Delta-G solvation = -181.394435 kcal Electronic energy + Delta-G solvation = -23921.931242 eV Core-core repulsion = 19926.019823 eV Total energy + Delta-G solvation = -3995.911419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.12813 -48.64480 -48.58796 -41.34967 -38.81947 -36.21264 -34.76032 -32.92979 -32.26400 -29.29155 -27.11446 -25.55034 -25.36331 -23.26898 -21.53744 -20.45317 -19.68507 -19.57929 -19.22896 -18.48039 -17.85040 -17.25803 -16.57165 -16.10590 -15.96674 -15.54115 -15.52001 -15.29943 -15.11706 -14.99342 -14.76628 -14.72563 -14.49842 -14.25985 -13.97408 -13.90750 -13.39501 -13.00744 -12.93599 -12.78194 -12.55477 -12.04954 -12.02152 -11.88611 -11.80797 -11.30327 -11.07651 -10.39270 -9.70803 -8.86833 -8.18981 -5.35926 1.35567 1.54803 1.55919 1.59695 1.78960 2.03135 2.62417 2.66981 2.95562 3.01069 3.18981 3.54572 3.60891 3.99879 4.02731 4.10713 4.18252 4.22608 4.37554 4.49107 4.63181 4.69481 4.82401 4.96663 5.00804 5.17653 5.20527 5.40053 5.64021 5.89644 6.30247 6.46491 6.97542 7.15911 7.83959 8.20115 9.02883 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.015103 B = 0.008416 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.447661 B = 3326.235430 C = 4373.939494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.059 4.059 3 Si 1.090 2.910 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.353 4.353 8 H 0.031 0.969 9 N -0.610 5.610 10 C 0.160 3.840 11 C -0.155 4.155 12 C 0.128 3.872 13 N -0.579 5.579 14 C 0.517 3.483 15 O -0.574 6.574 16 C -0.191 4.191 17 C 0.471 3.529 18 F -0.180 7.180 19 F -0.177 7.177 20 F -0.193 7.193 21 C 0.090 3.910 22 C 0.137 3.863 23 H 0.260 0.740 24 H 0.029 0.971 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.105 0.895 30 H 0.180 0.820 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.073 -8.521 -9.646 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.258 4.258 3 Si 0.917 3.083 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.483 4.483 8 H 0.049 0.951 9 N -0.334 5.334 10 C 0.033 3.967 11 C -0.196 4.196 12 C 0.008 3.992 13 N -0.309 5.309 14 C 0.305 3.695 15 O -0.454 6.454 16 C -0.231 4.231 17 C 0.417 3.583 18 F -0.162 7.162 19 F -0.158 7.158 20 F -0.174 7.174 21 C -0.035 4.035 22 C 0.012 3.988 23 H 0.071 0.929 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.042 0.958 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.123 0.877 30 H 0.197 0.803 31 H 0.157 0.843 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.049 0.951 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.632 -7.018 -9.833 12.097 hybrid contribution 0.562 -1.047 0.439 1.267 sum -0.069 -8.065 -9.395 12.382 Atomic orbital electron populations 1.70924 1.06946 1.29624 1.50049 1.26578 0.96583 1.03502 0.99098 0.83160 0.74295 0.74013 0.76826 1.21151 1.21708 1.20990 1.19972 0.97670 0.90913 1.39769 0.95090 1.43909 1.47085 1.01956 1.40409 1.20430 0.94530 0.86703 0.95044 1.21653 1.00228 1.00199 0.97483 1.20734 0.97811 0.89744 0.90961 1.47408 1.12200 1.37435 1.33846 1.20109 0.86697 0.81669 0.81016 1.90727 1.17208 1.67850 1.69605 1.23091 1.00136 1.01151 0.98683 1.19959 0.80379 0.76533 0.81452 1.93180 1.89533 1.61772 1.71704 1.93195 1.79132 1.64440 1.79052 1.93196 1.58878 1.84831 1.80523 1.22115 0.80826 1.00521 1.00032 1.22166 0.91006 0.97207 0.88442 0.92940 0.95268 0.91883 0.95787 0.89648 0.90702 0.87700 0.80288 0.84280 0.87390 0.88155 0.95143 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.76 12.63 21.65 0.27 -52.49 16 2 C -0.06 -3.23 4.60 84.86 0.39 -2.84 16 3 Si 1.09 50.93 29.99 68.60 2.06 52.99 16 4 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 5 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.35 -18.98 9.12 84.04 0.77 -18.21 16 8 H 0.03 1.78 7.96 -2.91 -0.02 1.76 16 9 N -0.61 -27.35 2.38 -697.37 -1.66 -29.01 16 10 C 0.16 5.92 5.63 87.21 0.49 6.41 16 11 C -0.15 -5.14 5.64 29.04 0.16 -4.97 16 12 C 0.13 3.62 5.70 84.23 0.48 4.10 16 13 N -0.58 -17.39 2.46 -830.48 -2.04 -19.43 16 14 C 0.52 17.28 7.44 87.66 0.65 17.93 16 15 O -0.57 -23.33 14.27 -3.01 -0.04 -23.37 16 16 C -0.19 -5.05 4.31 29.85 0.13 -4.92 16 17 C 0.47 14.17 2.89 71.98 0.21 14.38 16 18 F -0.18 -5.57 16.40 44.97 0.74 -4.83 16 19 F -0.18 -4.81 17.32 44.97 0.78 -4.03 16 20 F -0.19 -7.17 16.40 44.97 0.74 -6.44 16 21 C 0.09 2.34 5.06 87.68 0.44 2.79 16 22 C 0.14 5.28 5.09 86.69 0.44 5.72 16 23 H 0.26 14.62 6.37 -92.71 -0.59 14.03 16 24 H 0.03 1.17 8.02 -2.39 -0.02 1.15 16 25 H 0.06 1.95 7.59 -2.39 -0.02 1.93 16 26 H 0.02 1.01 7.91 -2.39 -0.02 0.99 16 27 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.07 2.25 7.12 -2.39 -0.02 2.23 16 29 H 0.10 2.17 8.05 -2.38 -0.02 2.15 16 30 H 0.18 2.93 7.37 -2.38 -0.02 2.92 16 31 H 0.14 3.90 7.34 -2.39 -0.02 3.88 16 32 H 0.11 2.04 6.38 -2.39 -0.02 2.02 16 33 H 0.10 2.11 7.72 -2.39 -0.02 2.09 16 34 H 0.03 1.22 7.11 -2.39 -0.02 1.21 16 35 H 0.04 1.76 6.22 -2.39 -0.01 1.74 16 Total: -1.00 -69.41 291.94 6.30 -63.11 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: 1.29 Total: 3.12 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 4.17 Total: 20.37 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -3.43 Total: -100.93 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 9 Polarization: -17.55 SS G_CDS: 2.25 Total: -15.30 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.06 Total: 52.99 kcal Total: -69.41 6.30 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980790011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.282 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds