Wall clock time and date at job start Tue Mar 31 2020 01:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99833 * 2 1 4 4 H 1.48503 * 109.47151 * 269.99997 * 3 2 1 5 5 H 1.48501 * 109.47086 * 29.99758 * 3 2 1 6 6 H 1.48505 * 109.47478 * 149.99804 * 3 2 1 7 7 C 1.38814 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99564 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00384 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00069 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49508 * 324.92988 * 10 9 7 12 12 C 1.53044 * 109.49460 * 204.83394 * 10 9 7 13 13 C 1.53040 * 109.53662 * 178.68139 * 12 10 9 14 14 C 1.53197 * 109.31110 * 61.36306 * 13 12 10 15 15 N 1.46957 * 108.89063 * 305.44560 * 14 13 12 16 16 C 1.34780 * 120.64915 * 233.53185 * 15 14 13 17 17 O 1.21288 * 119.99578 * 179.81962 * 16 15 14 18 18 C 1.50697 * 120.00489 * 359.81927 * 16 15 14 19 19 C 1.52998 * 109.46984 * 179.97438 * 18 16 15 20 20 F 1.39899 * 109.47225 * 60.00548 * 19 18 16 21 21 F 1.39901 * 109.46874 * 179.97438 * 19 18 16 22 22 F 1.39892 * 109.47524 * 299.99705 * 19 18 16 23 23 C 1.46926 * 118.71783 * 53.35357 * 15 14 13 24 24 H 0.96996 * 119.99902 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99422 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.45986 * 298.69942 * 12 10 9 27 27 H 1.09000 * 109.45849 * 58.66031 * 12 10 9 28 28 H 1.08995 * 109.49643 * 181.31582 * 13 12 10 29 29 H 1.08996 * 109.49892 * 301.41776 * 13 12 10 30 30 H 1.09001 * 109.58145 * 65.15551 * 14 13 12 31 31 H 1.08998 * 109.58437 * 185.57393 * 14 13 12 32 32 H 1.09004 * 109.46922 * 300.00225 * 18 16 15 33 33 H 1.08997 * 109.46776 * 60.00082 * 18 16 15 34 34 H 1.09002 * 109.58861 * 186.78362 * 23 15 14 35 35 H 1.08996 * 109.58519 * 66.50253 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4708 0.0011 11 1 3.5656 -3.2065 0.5911 12 6 5.5013 -2.2586 0.6076 13 6 6.2552 -3.5900 0.6382 14 6 6.4266 -4.1082 -0.7932 15 7 5.1067 -4.1766 -1.4357 16 6 4.6800 -5.3193 -2.0091 17 8 3.5870 -5.3634 -2.5332 18 6 5.5607 -6.5421 -1.9990 19 6 4.8442 -7.6924 -2.7092 20 9 4.5704 -7.3259 -4.0312 21 9 5.6621 -8.8274 -2.7003 22 9 3.6456 -7.9757 -2.0459 23 6 4.2594 -2.9763 -1.4375 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3620 0.0007 26 1 6.0558 -1.5411 0.0028 27 1 5.3995 -1.8754 1.6229 28 1 7.2354 -3.4427 1.0916 29 1 5.6889 -4.3154 1.2223 30 1 7.0685 -3.4284 -1.3534 31 1 6.8743 -5.1018 -0.7709 32 1 6.4949 -6.3213 -2.5154 33 1 5.7736 -6.8279 -0.9689 34 1 3.2771 -3.2230 -1.8405 35 1 4.7222 -2.2033 -2.0509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998669872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:09 Heat of formation + Delta-G solvation = -176.563991 kcal Electronic energy + Delta-G solvation = -22698.037411 eV Core-core repulsion = 18702.335456 eV Total energy + Delta-G solvation = -3995.701955 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.14196 -47.69434 -47.53660 -40.16169 -37.57488 -34.76561 -32.64481 -31.92872 -31.31939 -28.81362 -25.67543 -24.18370 -23.46949 -21.85972 -20.58997 -19.35421 -18.63726 -18.58956 -17.61109 -17.45312 -16.81249 -15.67806 -15.46834 -14.73653 -14.55408 -14.48026 -14.39290 -14.18447 -13.98292 -13.72995 -13.71221 -13.66485 -13.25006 -13.17124 -12.72056 -12.59102 -12.36052 -12.14049 -11.69564 -11.30069 -10.99367 -10.82213 -10.75494 -10.34508 -9.98785 -9.93632 -9.62143 -9.18748 -8.54944 -7.35353 -5.80535 -3.18799 2.41836 2.47827 2.96424 3.33264 3.35854 3.42199 3.57674 3.86619 3.90713 4.45354 4.54357 4.63791 4.79293 4.81605 4.88724 5.03310 5.25188 5.35125 5.37745 5.61920 5.69562 5.78586 5.91620 5.97567 6.13259 6.28403 6.47888 6.63515 6.79643 7.36004 7.94125 8.06259 8.37808 9.14559 9.85975 10.03761 11.37333 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.004412 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.397293 B = 6345.386427 C = 7012.449357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.103 3.897 15 N -0.601 5.601 16 C 0.513 3.487 17 O -0.518 6.518 18 C -0.195 4.195 19 C 0.471 3.529 20 F -0.173 7.173 21 F -0.186 7.186 22 F -0.171 7.171 23 C 0.092 3.908 24 H 0.260 0.740 25 H 0.363 0.637 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.097 0.903 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.928 -12.972 -1.697 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.188 4.188 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.169 4.169 14 C -0.020 4.020 15 N -0.335 5.335 16 C 0.298 3.702 17 O -0.393 6.393 18 C -0.236 4.236 19 C 0.417 3.583 20 F -0.155 7.155 21 F -0.168 7.168 22 F -0.153 7.153 23 C -0.032 4.032 24 H 0.071 0.929 25 H 0.196 0.804 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.116 0.884 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.028 -13.046 -1.983 22.341 hybrid contribution 0.589 1.099 -0.082 1.250 sum 18.617 -11.947 -2.065 22.217 Atomic orbital electron populations 1.69706 1.05147 1.25927 1.56838 1.24687 0.95211 0.97215 1.01638 0.86563 0.79179 0.85011 0.77810 1.21000 1.21652 1.20316 1.19100 0.80329 0.94914 1.43766 0.89017 1.42718 1.04175 1.01668 1.89802 1.20462 0.91000 0.89630 0.92723 0.92153 1.21873 0.96666 0.96378 1.01961 1.21878 1.01006 0.98326 0.95696 1.21834 0.84219 1.01770 0.94183 1.48171 1.18237 1.11595 1.55497 1.19717 0.86968 0.83826 0.79689 1.90855 1.20888 1.83363 1.44182 1.23031 1.01775 0.93253 1.05576 1.19755 0.77780 0.82742 0.78043 1.93225 1.94063 1.91337 1.36840 1.93186 1.72697 1.54375 1.96509 1.93238 1.47586 1.94169 1.80269 1.22791 0.95671 0.83881 1.00825 0.92936 0.80420 0.92051 0.91182 0.90672 0.91233 0.90931 0.90255 0.84702 0.84585 0.88424 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 3 Si 0.88 21.63 27.74 -169.99 -4.71 16.92 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.27 6.52 56.52 0.37 -5.91 16 7 C -0.25 -7.00 10.41 -15.06 -0.16 -7.16 16 8 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 9 N -0.74 -16.84 4.93 -53.30 -0.26 -17.10 16 10 C 0.17 3.12 2.92 -67.81 -0.20 2.92 16 11 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 12 C -0.13 -1.74 5.35 -26.69 -0.14 -1.88 16 13 C -0.13 -1.23 6.08 -26.61 -0.16 -1.39 16 14 C 0.10 0.89 6.34 -3.69 -0.02 0.87 16 15 N -0.60 -7.97 2.98 -172.74 -0.51 -8.48 16 16 C 0.51 7.24 7.47 -10.99 -0.08 7.15 16 17 O -0.52 -9.93 14.25 5.55 0.08 -9.85 16 18 C -0.20 -1.74 4.10 -27.89 -0.11 -1.86 16 19 C 0.47 5.49 2.89 37.16 0.11 5.60 16 20 F -0.17 -2.40 16.40 2.25 0.04 -2.36 16 21 F -0.19 -1.90 17.32 2.25 0.04 -1.86 16 22 F -0.17 -2.45 16.40 2.25 0.04 -2.41 16 23 C 0.09 1.59 6.01 -3.71 -0.02 1.57 16 24 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 25 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.42 5.94 -51.93 -0.31 0.11 16 32 H 0.13 0.75 7.95 -51.93 -0.41 0.34 16 33 H 0.14 0.81 7.69 -51.93 -0.40 0.41 16 34 H 0.10 2.07 7.01 -51.93 -0.36 1.71 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 299.33 15.07 4.51 4.51 Total: -1.00 -34.18 299.33 -5.17 -39.35 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.26 Total: 3.71 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.89 Total: 5.98 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.00 Total: -53.98 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.85 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.11 Total: -6.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -34.18 -5.17 -39.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998669872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.216 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds