Wall clock time and date at job start Tue Mar 31 2020 01:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99833 * 2 1 4 4 H 1.48503 * 109.47151 * 269.99997 * 3 2 1 5 5 H 1.48501 * 109.47086 * 29.99758 * 3 2 1 6 6 H 1.48505 * 109.47478 * 149.99804 * 3 2 1 7 7 C 1.38814 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99564 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00384 * 180.02562 * 7 2 1 10 10 C 1.46499 * 120.00069 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49508 * 324.92988 * 10 9 7 12 12 C 1.53044 * 109.49460 * 204.83394 * 10 9 7 13 13 C 1.53040 * 109.53662 * 178.68139 * 12 10 9 14 14 C 1.53197 * 109.31110 * 61.36306 * 13 12 10 15 15 N 1.46957 * 108.89063 * 305.44560 * 14 13 12 16 16 C 1.34780 * 120.64915 * 233.53185 * 15 14 13 17 17 O 1.21288 * 119.99578 * 179.81962 * 16 15 14 18 18 C 1.50697 * 120.00489 * 359.81927 * 16 15 14 19 19 C 1.52998 * 109.46984 * 179.97438 * 18 16 15 20 20 F 1.39899 * 109.47225 * 60.00548 * 19 18 16 21 21 F 1.39901 * 109.46874 * 179.97438 * 19 18 16 22 22 F 1.39892 * 109.47524 * 299.99705 * 19 18 16 23 23 C 1.46926 * 118.71783 * 53.35357 * 15 14 13 24 24 H 0.96996 * 119.99902 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99422 * 359.97438 * 9 7 2 26 26 H 1.08994 * 109.45986 * 298.69942 * 12 10 9 27 27 H 1.09000 * 109.45849 * 58.66031 * 12 10 9 28 28 H 1.08995 * 109.49643 * 181.31582 * 13 12 10 29 29 H 1.08996 * 109.49892 * 301.41776 * 13 12 10 30 30 H 1.09001 * 109.58145 * 65.15551 * 14 13 12 31 31 H 1.08998 * 109.58437 * 185.57393 * 14 13 12 32 32 H 1.09004 * 109.46922 * 300.00225 * 18 16 15 33 33 H 1.08997 * 109.46776 * 60.00082 * 18 16 15 34 34 H 1.09002 * 109.58861 * 186.78362 * 23 15 14 35 35 H 1.08996 * 109.58519 * 66.50253 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5478 1.4403 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1123 -2.4708 0.0011 11 1 3.5656 -3.2065 0.5911 12 6 5.5013 -2.2586 0.6076 13 6 6.2552 -3.5900 0.6382 14 6 6.4266 -4.1082 -0.7932 15 7 5.1067 -4.1766 -1.4357 16 6 4.6800 -5.3193 -2.0091 17 8 3.5870 -5.3634 -2.5332 18 6 5.5607 -6.5421 -1.9990 19 6 4.8442 -7.6924 -2.7092 20 9 4.5704 -7.3259 -4.0312 21 9 5.6621 -8.8274 -2.7003 22 9 3.6456 -7.9757 -2.0459 23 6 4.2594 -2.9763 -1.4375 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3620 0.0007 26 1 6.0558 -1.5411 0.0028 27 1 5.3995 -1.8754 1.6229 28 1 7.2354 -3.4427 1.0916 29 1 5.6889 -4.3154 1.2223 30 1 7.0685 -3.4284 -1.3534 31 1 6.8743 -5.1018 -0.7709 32 1 6.4949 -6.3213 -2.5154 33 1 5.7736 -6.8279 -0.9689 34 1 3.2771 -3.2230 -1.8405 35 1 4.7222 -2.2033 -2.0509 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998669872.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:08 Heat of formation + Delta-G solvation = -201.836835 kcal Electronic energy + Delta-G solvation = -22699.133324 eV Core-core repulsion = 18702.335456 eV Total energy + Delta-G solvation = -3996.797868 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.07154 -48.58690 -48.54969 -41.27464 -38.83099 -36.36305 -34.15976 -32.92822 -32.83490 -30.32360 -26.77155 -25.70614 -24.64413 -23.12807 -21.94721 -20.46625 -19.65948 -19.56322 -19.45638 -18.39486 -17.87801 -16.88011 -16.59802 -16.43243 -15.82956 -15.52677 -15.43221 -15.31646 -15.01808 -14.95633 -14.72567 -14.70859 -14.64988 -14.31909 -14.07934 -13.82913 -13.42473 -13.33984 -13.00424 -12.86739 -12.57476 -12.08514 -11.92650 -11.85010 -11.77630 -11.36943 -11.19478 -11.00332 -9.87118 -9.28091 -8.05466 -5.41966 1.35839 1.40777 1.43849 1.48870 1.52908 1.99780 2.46615 2.72296 2.99032 3.06721 3.25496 3.52760 3.62540 3.97762 4.06184 4.10694 4.16391 4.23197 4.28205 4.37723 4.63749 4.73895 4.86719 4.93288 5.03083 5.17440 5.38255 5.44519 5.47989 5.73332 6.18304 6.32412 7.00097 7.04612 7.76852 7.98343 9.16451 Molecular weight = 280.11amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.004412 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.397293 B = 6345.386427 C = 7012.449357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.242 1.242 7 C -0.239 4.239 8 H 0.043 0.957 9 N -0.744 5.744 10 C 0.168 3.832 11 H 0.030 0.970 12 C -0.123 4.123 13 C -0.124 4.124 14 C 0.094 3.906 15 N -0.598 5.598 16 C 0.502 3.498 17 O -0.584 6.584 18 C -0.177 4.177 19 C 0.463 3.537 20 F -0.192 7.192 21 F -0.175 7.175 22 F -0.194 7.194 23 C 0.105 3.895 24 H 0.259 0.741 25 H 0.371 0.629 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.183 0.817 33 H 0.178 0.822 34 H 0.041 0.959 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.051 -12.936 -1.005 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.256 4.256 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.166 1.166 7 C -0.370 4.370 8 H 0.061 0.939 9 N -0.388 5.388 10 C 0.059 3.941 11 H 0.048 0.952 12 C -0.161 4.161 13 C -0.163 4.163 14 C -0.026 4.026 15 N -0.331 5.331 16 C 0.290 3.710 17 O -0.464 6.464 18 C -0.217 4.217 19 C 0.409 3.591 20 F -0.173 7.173 21 F -0.156 7.156 22 F -0.176 7.176 23 C -0.021 4.021 24 H 0.068 0.932 25 H 0.205 0.795 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.200 0.800 33 H 0.195 0.805 34 H 0.060 0.940 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 23.262 -13.056 -1.269 26.706 hybrid contribution -1.030 0.940 -0.305 1.427 sum 22.232 -12.117 -1.574 25.369 Atomic orbital electron populations 1.69923 1.07546 1.26919 1.59208 1.25636 0.96163 1.01756 1.02045 0.85295 0.78854 0.78697 0.78188 1.20400 1.22248 1.16578 1.18962 0.82840 0.93110 1.42124 0.93859 1.42657 1.02276 1.03875 1.89959 1.20676 0.93353 0.86979 0.93134 0.95190 1.21820 0.93486 0.99547 1.01292 1.21905 1.02274 0.95506 0.96576 1.22332 0.81664 1.05314 0.93280 1.48218 1.19419 1.09957 1.55480 1.20653 0.86766 0.85215 0.78368 1.90837 1.24066 1.84524 1.46959 1.23108 1.01334 0.88929 1.08297 1.20234 0.77426 0.84007 0.77432 1.93189 1.94252 1.91550 1.38340 1.93206 1.72020 1.53978 1.96409 1.93196 1.49329 1.94432 1.80598 1.22198 0.94223 0.85999 0.99681 0.93237 0.79518 0.90433 0.91595 0.86491 0.91789 0.88686 0.85458 0.79964 0.80471 0.93997 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.97 13.97 21.65 0.30 -64.67 16 2 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 45.06 27.74 68.60 1.90 46.96 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.24 -9.79 6.52 99.48 0.65 -9.14 16 7 C -0.24 -14.02 10.41 84.03 0.87 -13.15 16 8 H 0.04 2.89 8.06 -2.91 -0.02 2.86 16 9 N -0.74 -34.14 4.93 -322.56 -1.59 -35.73 16 10 C 0.17 6.09 2.92 45.07 0.13 6.22 16 11 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 12 C -0.12 -2.90 5.35 30.62 0.16 -2.74 16 13 C -0.12 -1.71 6.08 30.67 0.19 -1.52 16 14 C 0.09 1.10 6.34 86.36 0.55 1.65 16 15 N -0.60 -14.64 2.98 -818.81 -2.44 -17.08 16 16 C 0.50 13.57 7.47 87.66 0.65 14.22 16 17 O -0.58 -23.49 14.25 -3.05 -0.04 -23.54 16 18 C -0.18 -2.45 4.10 29.85 0.12 -2.33 16 19 C 0.46 10.03 2.89 71.98 0.21 10.23 16 20 F -0.19 -5.26 16.40 44.97 0.74 -4.52 16 21 F -0.17 -3.10 17.32 44.97 0.78 -2.32 16 22 F -0.19 -5.58 16.40 44.97 0.74 -4.84 16 23 C 0.10 3.67 6.01 86.36 0.52 4.19 16 24 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 25 H 0.37 15.72 5.66 -92.71 -0.52 15.19 16 26 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.13 0.35 5.94 -2.39 -0.01 0.34 16 32 H 0.18 0.84 7.95 -2.38 -0.02 0.82 16 33 H 0.18 1.04 7.69 -2.39 -0.02 1.02 16 34 H 0.04 1.93 7.01 -2.39 -0.02 1.91 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -84.79 299.33 4.80 -79.99 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.54 Total: 12.37 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 3.88 Total: 13.38 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -3.73 Total: -117.48 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.04 Total: -23.54 kcal Atomic # 9 Polarization: -13.93 SS G_CDS: 2.25 Total: -11.68 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Total: -84.79 4.80 -79.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998669872.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.846 kcal (2) G-P(sol) polarization free energy of solvation -84.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds