Wall clock time and date at job start Tue Mar 31 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47523 * 240.00470 * 3 2 1 5 5 H 1.48499 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46915 * 120.00403 * 3 2 1 7 7 C 1.38814 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99602 * 196.90538 * 7 2 1 9 9 N 1.36929 * 120.00143 * 16.90482 * 7 2 1 10 10 C 1.47155 * 120.97906 * 206.25077 * 9 7 2 11 11 C 1.53304 * 108.38154 * 230.51133 * 10 9 7 12 12 O 1.42952 * 109.26536 * 307.72094 * 11 10 9 13 13 C 1.42960 * 114.17042 * 62.49970 * 12 11 10 14 14 H 1.08999 * 109.51425 * 57.45081 * 13 12 11 15 15 C 1.52999 * 109.51613 * 177.54976 * 13 12 11 16 16 N 1.46495 * 109.47419 * 299.90488 * 15 13 12 17 17 C 1.34777 * 120.00331 * 179.97438 * 16 15 13 18 18 O 1.21609 * 120.00094 * 359.97438 * 17 16 15 19 19 C 1.47381 * 119.99742 * 179.97438 * 17 16 15 20 20 C 1.47020 * 127.18846 * 179.97438 * 19 17 16 21 21 C 1.34180 * 105.95556 * 179.97438 * 20 19 17 22 22 O 1.34211 * 109.12023 * 359.97438 * 21 20 19 23 23 C 1.33648 * 110.91205 * 0.02562 * 22 21 20 24 24 C 1.47155 * 120.98717 * 26.22587 * 9 7 2 25 25 H 0.96999 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.68387 * 350.23285 * 10 9 7 27 27 H 1.08996 * 109.68179 * 110.75562 * 10 9 7 28 28 H 1.08993 * 109.51149 * 67.62139 * 11 10 9 29 29 H 1.08998 * 109.50867 * 187.77695 * 11 10 9 30 30 H 1.08994 * 109.47802 * 179.89651 * 15 13 12 31 31 H 1.09007 * 109.46881 * 59.89706 * 15 13 12 32 32 H 0.97008 * 119.99989 * 359.97438 * 16 15 13 33 33 H 1.08004 * 127.02504 * 0.22397 * 20 19 17 34 34 H 1.08004 * 125.43923 * 179.97438 * 21 20 19 35 35 H 1.08008 * 125.80566 * 179.97438 * 23 22 21 36 36 H 1.09001 * 109.67952 * 9.76435 * 24 9 7 37 37 H 1.08991 * 109.71276 * 249.23196 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2714 9 7 1.3700 -2.3622 -0.3459 10 6 1.8341 -3.6634 0.1612 11 6 1.9812 -4.6208 -1.0270 12 8 0.7654 -4.6296 -1.7790 13 6 0.4242 -3.3663 -2.3547 14 1 1.2368 -3.0276 -2.9973 15 6 -0.8550 -3.5104 -3.1817 16 7 -0.6381 -4.4887 -4.2503 17 6 -1.6346 -4.7801 -5.1097 18 8 -2.7140 -4.2312 -4.9979 19 6 -1.4160 -5.7639 -6.1851 20 6 -2.3846 -6.1985 -7.2022 21 6 -1.7424 -7.0988 -7.9622 22 8 -0.4895 -7.2467 -7.5045 23 6 -0.2726 -6.4608 -6.4454 24 6 0.1973 -2.3447 -1.2346 25 1 -0.4850 0.8400 0.0004 26 1 2.7976 -3.5420 0.6563 27 1 1.1062 -4.0629 0.8673 28 1 2.8001 -4.2871 -1.6642 29 1 2.1900 -5.6260 -0.6609 30 1 -1.1156 -2.5466 -3.6189 31 1 -1.6672 -3.8491 -2.5385 32 1 0.2228 -4.9268 -4.3394 33 1 -3.4035 -5.8592 -7.3170 34 1 -2.1662 -7.6210 -8.8073 35 1 0.6509 -6.3897 -5.8899 36 1 0.0768 -1.3500 -1.6638 37 1 -0.6960 -2.6114 -0.6699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035288476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:50 Heat of formation + Delta-G solvation = -38.591353 kcal Electronic energy + Delta-G solvation = -21646.609667 eV Core-core repulsion = 18198.747395 eV Total energy + Delta-G solvation = -3447.862272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.69679 -39.40040 -38.36661 -34.82658 -34.33236 -33.03116 -31.42475 -31.06056 -29.81596 -27.40758 -25.72676 -23.52693 -23.17646 -21.75934 -21.49728 -20.24062 -19.58848 -18.49202 -17.00093 -16.34073 -16.24674 -16.00471 -15.58811 -15.13536 -14.92778 -14.54087 -14.33985 -13.98995 -13.56050 -13.28448 -13.09464 -12.88300 -12.82392 -12.57105 -12.24945 -11.54823 -11.12699 -10.85838 -10.76846 -10.45417 -10.31679 -10.09088 -9.97109 -9.91926 -9.68964 -9.12941 -9.05576 -8.84039 -8.57707 -6.79453 -5.87475 -3.31474 1.22180 1.91994 2.72460 3.26070 3.33896 3.39807 3.40448 3.42264 4.21046 4.41314 4.42355 4.55259 4.94671 5.15443 5.31517 5.34871 5.47829 5.52116 5.59418 5.72304 5.82274 5.89498 5.99502 6.07326 6.11120 6.20651 6.33419 6.46355 6.62416 6.74517 6.74868 7.03145 7.44501 7.63291 7.67462 7.79554 8.29667 8.33318 9.07487 9.70464 10.27385 11.20618 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.003676 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.090497 B = 7614.966077 C = 8100.184377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.109 3.891 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.133 3.867 16 N -0.715 5.715 17 C 0.581 3.419 18 O -0.540 6.540 19 C -0.229 4.229 20 C -0.165 4.165 21 C -0.045 4.045 22 O -0.176 6.176 23 C 0.019 3.981 24 C 0.152 3.848 25 H 0.257 0.743 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.399 0.601 33 H 0.159 0.841 34 H 0.208 0.792 35 H 0.212 0.788 36 H 0.096 0.904 37 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -13.504 -13.065 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.074 0.926 15 C 0.010 3.990 16 N -0.366 5.366 17 C 0.368 3.632 18 O -0.418 6.418 19 C -0.234 4.234 20 C -0.185 4.185 21 C -0.111 4.111 22 O -0.071 6.071 23 C -0.052 4.052 24 C 0.026 3.974 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.233 0.767 33 H 0.177 0.823 34 H 0.224 0.776 35 H 0.228 0.772 36 H 0.115 0.885 37 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.025 -13.273 -13.080 18.635 hybrid contribution 0.851 1.021 0.207 1.345 sum 0.877 -12.251 -12.873 17.793 Atomic orbital electron populations 1.70008 1.05251 1.25951 1.53299 1.25067 0.95362 0.98532 1.00590 0.86320 0.78894 0.83103 0.78159 1.20946 1.21474 1.20816 1.19140 0.92632 0.84502 1.42536 0.91378 1.44040 1.33728 1.01378 1.52669 1.21602 0.98641 0.87554 0.93962 1.23010 0.86138 0.99636 0.94024 1.87772 1.42267 1.31509 1.69462 1.23157 0.94958 0.86484 0.95872 0.92579 1.21451 0.97831 0.92308 0.87432 1.45818 1.15172 1.44393 1.31208 1.17280 0.84148 0.81149 0.80646 1.90789 1.24966 1.52729 1.73333 1.21634 0.95556 1.04502 1.01695 1.22813 1.00962 0.99338 0.95374 1.23930 0.82286 1.02770 1.02082 1.83783 1.31251 1.53581 1.38528 1.24491 0.99717 0.92016 0.88951 1.21305 0.89508 0.97608 0.88997 0.93298 0.91965 0.95533 0.93858 0.89984 0.89798 0.90545 0.76683 0.82325 0.77554 0.77176 0.88548 0.94997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.14 55.49 0.62 -25.07 16 2 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 3 Si 0.91 21.23 29.59 -169.99 -5.03 16.20 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.94 9.65 -15.06 -0.15 -7.09 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.64 3.05 -171.83 -0.52 -15.17 16 10 C 0.11 2.22 6.74 -3.53 -0.02 2.20 16 11 C 0.05 0.84 6.98 37.31 0.26 1.10 16 12 O -0.39 -7.04 10.14 -35.23 -0.36 -7.39 16 13 C 0.05 1.01 2.86 -26.58 -0.08 0.94 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.13 2.26 5.37 -4.04 -0.02 2.24 16 16 N -0.72 -10.30 5.44 -61.40 -0.33 -10.63 16 17 C 0.58 9.08 7.81 -12.54 -0.10 8.98 16 18 O -0.54 -10.54 16.98 5.27 0.09 -10.45 16 19 C -0.23 -2.86 6.31 -103.28 -0.65 -3.51 16 20 C -0.17 -1.81 11.01 -37.45 -0.41 -2.22 16 21 C -0.04 -0.37 12.03 29.30 0.35 -0.02 16 22 O -0.18 -1.65 10.52 7.67 0.08 -1.57 16 23 C 0.02 0.17 11.61 30.07 0.35 0.52 16 24 C 0.15 3.55 4.73 -3.53 -0.02 3.53 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.40 4.70 7.32 -40.82 -0.30 4.40 16 33 H 0.16 1.64 8.06 -52.48 -0.42 1.21 16 34 H 0.21 0.85 8.06 -52.48 -0.42 0.42 16 35 H 0.21 1.25 7.47 -52.48 -0.39 0.86 16 36 H 0.10 2.47 6.14 -51.93 -0.32 2.15 16 37 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 316.44 15.07 4.77 4.77 Total: -1.00 -33.20 316.44 -6.03 -39.24 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.78 Total: 3.38 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -0.57 Total: 6.70 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.24 Total: -50.87 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.19 Total: -19.41 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.20 -6.03 -39.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035288476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.644 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds