Wall clock time and date at job start Tue Mar 31 2020 01:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47523 * 240.00470 * 3 2 1 5 5 H 1.48499 * 109.47244 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46915 * 120.00403 * 3 2 1 7 7 C 1.38814 * 119.99864 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99602 * 196.90538 * 7 2 1 9 9 N 1.36929 * 120.00143 * 16.90482 * 7 2 1 10 10 C 1.47155 * 120.97906 * 206.25077 * 9 7 2 11 11 C 1.53304 * 108.38154 * 230.51133 * 10 9 7 12 12 O 1.42952 * 109.26536 * 307.72094 * 11 10 9 13 13 C 1.42960 * 114.17042 * 62.49970 * 12 11 10 14 14 H 1.08999 * 109.51425 * 57.45081 * 13 12 11 15 15 C 1.52999 * 109.51613 * 177.54976 * 13 12 11 16 16 N 1.46495 * 109.47419 * 299.90488 * 15 13 12 17 17 C 1.34777 * 120.00331 * 179.97438 * 16 15 13 18 18 O 1.21609 * 120.00094 * 359.97438 * 17 16 15 19 19 C 1.47381 * 119.99742 * 179.97438 * 17 16 15 20 20 C 1.47020 * 127.18846 * 179.97438 * 19 17 16 21 21 C 1.34180 * 105.95556 * 179.97438 * 20 19 17 22 22 O 1.34211 * 109.12023 * 359.97438 * 21 20 19 23 23 C 1.33648 * 110.91205 * 0.02562 * 22 21 20 24 24 C 1.47155 * 120.98717 * 26.22587 * 9 7 2 25 25 H 0.96999 * 119.99958 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.68387 * 350.23285 * 10 9 7 27 27 H 1.08996 * 109.68179 * 110.75562 * 10 9 7 28 28 H 1.08993 * 109.51149 * 67.62139 * 11 10 9 29 29 H 1.08998 * 109.50867 * 187.77695 * 11 10 9 30 30 H 1.08994 * 109.47802 * 179.89651 * 15 13 12 31 31 H 1.09007 * 109.46881 * 59.89706 * 15 13 12 32 32 H 0.97008 * 119.99989 * 359.97438 * 16 15 13 33 33 H 1.08004 * 127.02504 * 0.22397 * 20 19 17 34 34 H 1.08004 * 125.43923 * 179.97438 * 21 20 19 35 35 H 1.08008 * 125.80566 * 179.97438 * 23 22 21 36 36 H 1.09001 * 109.67952 * 9.76435 * 24 9 7 37 37 H 1.08991 * 109.71276 * 249.23196 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0553 -1.2225 0.2714 9 7 1.3700 -2.3622 -0.3459 10 6 1.8341 -3.6634 0.1612 11 6 1.9812 -4.6208 -1.0270 12 8 0.7654 -4.6296 -1.7790 13 6 0.4242 -3.3663 -2.3547 14 1 1.2368 -3.0276 -2.9973 15 6 -0.8550 -3.5104 -3.1817 16 7 -0.6381 -4.4887 -4.2503 17 6 -1.6346 -4.7801 -5.1097 18 8 -2.7140 -4.2312 -4.9979 19 6 -1.4160 -5.7639 -6.1851 20 6 -2.3846 -6.1985 -7.2022 21 6 -1.7424 -7.0988 -7.9622 22 8 -0.4895 -7.2467 -7.5045 23 6 -0.2726 -6.4608 -6.4454 24 6 0.1973 -2.3447 -1.2346 25 1 -0.4850 0.8400 0.0004 26 1 2.7976 -3.5420 0.6563 27 1 1.1062 -4.0629 0.8673 28 1 2.8001 -4.2871 -1.6642 29 1 2.1900 -5.6260 -0.6609 30 1 -1.1156 -2.5466 -3.6189 31 1 -1.6672 -3.8491 -2.5385 32 1 0.2228 -4.9268 -4.3394 33 1 -3.4035 -5.8592 -7.3170 34 1 -2.1662 -7.6210 -8.8073 35 1 0.6509 -6.3897 -5.8899 36 1 0.0768 -1.3500 -1.6638 37 1 -0.6960 -2.6114 -0.6699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035288476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:49 Heat of formation + Delta-G solvation = -63.257697 kcal Electronic energy + Delta-G solvation = -21647.679280 eV Core-core repulsion = 18198.747395 eV Total energy + Delta-G solvation = -3448.931885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.44983 -40.74133 -39.85937 -36.47855 -35.87051 -33.92044 -33.25408 -32.51859 -30.72220 -29.06002 -27.35618 -25.15001 -24.47722 -23.13591 -22.34150 -21.63233 -20.92346 -19.43486 -18.87871 -17.53448 -17.36514 -17.07200 -16.92549 -16.81173 -16.10857 -15.88773 -15.72672 -15.52123 -15.04959 -14.92155 -14.58974 -14.24550 -13.82548 -13.78028 -13.38295 -13.15211 -12.98412 -12.64649 -12.53529 -12.20167 -12.12351 -11.88135 -11.36288 -11.20250 -10.85393 -10.79968 -10.55211 -10.20849 -9.71413 -8.76471 -7.91840 -5.39542 0.36890 1.15119 1.46686 1.48928 1.56147 1.97460 2.15591 2.31567 2.47984 2.77730 3.23063 3.48961 3.64602 3.80172 4.00413 4.05659 4.16108 4.27133 4.45187 4.51151 4.56411 4.59540 4.68362 4.77984 4.83116 4.97009 5.03396 5.07013 5.22699 5.29840 5.35139 5.52095 5.59370 6.00616 6.25493 6.31821 6.50936 7.04619 7.16101 7.73860 8.27373 9.13849 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.003676 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.090497 B = 7614.966077 C = 8100.184377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.100 3.900 11 C 0.057 3.943 12 O -0.389 6.389 13 C 0.078 3.922 14 H 0.069 0.931 15 C 0.143 3.857 16 N -0.702 5.702 17 C 0.580 3.420 18 O -0.591 6.591 19 C -0.270 4.270 20 C -0.200 4.200 21 C -0.020 4.020 22 O -0.175 6.175 23 C 0.047 3.953 24 C 0.158 3.842 25 H 0.251 0.749 26 H 0.073 0.927 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.123 0.877 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.415 0.585 33 H 0.153 0.847 34 H 0.250 0.750 35 H 0.247 0.753 36 H 0.067 0.933 37 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -15.525 -14.657 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.093 0.907 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.020 4.020 12 O -0.309 6.309 13 C 0.018 3.982 14 H 0.086 0.914 15 C 0.019 3.981 16 N -0.353 5.353 17 C 0.370 3.630 18 O -0.473 6.473 19 C -0.274 4.274 20 C -0.220 4.220 21 C -0.085 4.085 22 O -0.069 6.069 23 C -0.023 4.023 24 C 0.032 3.968 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.141 0.859 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.252 0.748 33 H 0.170 0.830 34 H 0.266 0.734 35 H 0.263 0.737 36 H 0.085 0.915 37 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 2.458 -15.350 -14.682 21.383 hybrid contribution 0.135 1.557 0.740 1.730 sum 2.593 -13.792 -13.942 19.782 Atomic orbital electron populations 1.70182 1.06788 1.26172 1.55019 1.25864 0.96067 1.01752 1.00972 0.85286 0.77494 0.78837 0.78500 1.20017 1.22242 1.20012 1.19528 0.93098 0.85552 1.41566 0.90714 1.44351 1.33678 1.02466 1.53403 1.21847 0.98538 0.86476 0.95619 1.23098 0.85816 1.00728 0.92393 1.87790 1.43174 1.30475 1.69419 1.22732 0.95744 0.85504 0.94173 0.91355 1.21118 0.96518 0.92680 0.87807 1.45581 1.15869 1.43719 1.30163 1.17763 0.83316 0.81001 0.80943 1.90756 1.26970 1.54818 1.74753 1.21491 0.97887 1.05850 1.02203 1.22965 1.01256 1.01274 0.96512 1.24619 0.81232 1.00996 1.01687 1.83843 1.31660 1.53151 1.38239 1.25041 0.99563 0.89720 0.87989 1.21084 0.88271 0.97571 0.89906 0.93959 0.90877 0.96818 0.92460 0.85948 0.90637 0.92410 0.74783 0.82952 0.73404 0.73721 0.91481 0.98328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.28 11.14 21.65 0.24 -55.04 16 2 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 3 Si 0.97 44.06 29.59 68.60 2.03 46.09 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.27 -14.39 9.65 84.04 0.81 -13.58 16 8 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 9 N -0.61 -30.44 3.05 -697.54 -2.13 -32.57 16 10 C 0.10 3.98 6.74 86.36 0.58 4.56 16 11 C 0.06 1.74 6.98 72.08 0.50 2.24 16 12 O -0.39 -13.20 10.14 -148.98 -1.51 -14.71 16 13 C 0.08 2.85 2.86 30.69 0.09 2.94 16 14 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.14 4.97 5.37 86.38 0.46 5.43 16 16 N -0.70 -19.67 5.44 -466.43 -2.54 -22.21 16 17 C 0.58 18.23 7.81 86.65 0.68 18.91 16 18 O -0.59 -24.11 16.98 -4.06 -0.07 -24.18 16 19 C -0.27 -6.41 6.31 -18.99 -0.12 -6.53 16 20 C -0.20 -4.18 11.01 23.65 0.26 -3.92 16 21 C -0.02 -0.27 12.03 66.89 0.80 0.54 16 22 O -0.17 -2.60 10.52 4.55 0.05 -2.55 16 23 C 0.05 0.74 11.61 67.39 0.78 1.52 16 24 C 0.16 7.62 4.73 86.35 0.41 8.03 16 25 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.07 2.70 7.96 -2.39 -0.02 2.68 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 32 H 0.42 8.74 7.32 -92.70 -0.68 8.06 16 33 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.25 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.25 1.78 7.47 -2.91 -0.02 1.76 16 36 H 0.07 3.61 6.14 -2.39 -0.01 3.59 16 37 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -75.17 316.44 2.17 -73.00 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.41 Total: 14.41 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 5.68 Total: 17.75 kcal Atomic # 7 Polarization: -105.39 SS G_CDS: -4.42 Total: -109.81 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -1.53 Total: -41.44 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -75.17 2.17 -73.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035288476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.746 kcal (2) G-P(sol) polarization free energy of solvation -75.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds