Wall clock time and date at job start Tue Mar 31 2020 01:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99799 * 2 1 4 4 H 1.48492 * 109.47339 * 264.33586 * 3 2 1 5 5 H 1.48504 * 109.46932 * 24.33686 * 3 2 1 6 6 H 1.48507 * 109.47319 * 144.33445 * 3 2 1 7 7 C 1.38811 * 120.00609 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99491 * 8.91114 * 7 2 1 9 9 N 1.36932 * 120.00665 * 188.90867 * 7 2 1 10 10 C 1.47172 * 120.98426 * 49.91997 * 9 7 2 11 11 C 1.53296 * 108.41199 * 129.51106 * 10 9 7 12 12 O 1.42969 * 109.22323 * 52.27663 * 11 10 9 13 13 C 1.42957 * 114.16560 * 297.42057 * 12 11 10 14 14 C 1.47150 * 120.98559 * 229.89644 * 9 7 2 15 15 H 1.09004 * 109.67907 * 110.74968 * 14 9 7 16 16 C 1.52997 * 109.68085 * 350.23397 * 14 9 7 17 17 N 1.46508 * 109.47060 * 61.07483 * 16 14 9 18 18 C 1.34774 * 119.99635 * 179.97438 * 17 16 14 19 19 O 1.21699 * 120.00370 * 0.02562 * 18 17 16 20 20 C 1.46656 * 119.99721 * 179.97438 * 18 17 16 21 21 C 1.36544 * 125.98774 * 180.30216 * 20 18 17 22 22 C 1.40363 * 106.70783 * 180.12601 * 21 20 18 23 23 C 1.35135 * 107.11599 * 359.63574 * 22 21 20 24 24 O 1.33926 * 108.76315 * 0.22867 * 23 22 21 25 25 H 0.96992 * 120.00213 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.68804 * 9.76413 * 10 9 7 27 27 H 1.09000 * 109.64641 * 249.22537 * 10 9 7 28 28 H 1.09005 * 109.51116 * 292.35621 * 11 10 9 29 29 H 1.08993 * 109.51366 * 172.19964 * 11 10 9 30 30 H 1.09000 * 109.51433 * 302.65590 * 13 12 11 31 31 H 1.09004 * 109.55638 * 182.53098 * 13 12 11 32 32 H 1.09001 * 109.47152 * 301.07164 * 16 14 9 33 33 H 1.08996 * 109.46952 * 181.07176 * 16 14 9 34 34 H 0.96992 * 119.99827 * 359.97438 * 17 16 14 35 35 H 1.07999 * 126.64692 * 0.03264 * 21 20 18 36 36 H 1.08002 * 126.44396 * 179.89624 * 22 21 20 37 37 H 1.07998 * 125.61875 * 180.24341 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6173 1.9774 -1.3931 5 1 1.3928 2.6843 0.5770 6 1 3.4828 1.4778 0.8163 7 6 2.0104 -1.2021 -0.0005 8 1 1.4801 -2.1318 -0.1459 9 7 3.3673 -1.2093 0.1831 10 6 3.9844 -0.4786 1.3017 11 6 4.9316 -1.4321 2.0390 12 8 5.8281 -2.0265 1.0972 13 6 5.1859 -2.8301 0.1046 14 6 4.2516 -1.9483 -0.7319 15 1 4.8404 -1.2452 -1.3210 16 6 3.4125 -2.8251 -1.6635 17 7 2.5223 -1.9778 -2.4610 18 6 1.6850 -2.5362 -3.3574 19 8 1.6680 -3.7442 -3.5040 20 6 0.7935 -1.6881 -4.1554 21 6 -0.1032 -2.1220 -5.0893 22 6 -0.7350 -0.9790 -5.6037 23 6 -0.2087 0.0884 -4.9635 24 8 0.7119 -0.3430 -4.0917 25 1 -0.4850 0.8400 0.0004 26 1 3.2096 -0.1300 1.9845 27 1 4.5463 0.3728 0.9177 28 1 4.3517 -2.2123 2.5320 29 1 5.5016 -0.8758 2.7831 30 1 4.6069 -3.6154 0.5906 31 1 5.9381 -3.2804 -0.5432 32 1 2.8178 -3.5200 -1.0705 33 1 4.0716 -3.3851 -2.3267 34 1 2.5356 -1.0151 -2.3439 35 1 -0.2892 -3.1460 -5.3775 36 1 -1.5010 -0.9570 -6.3648 37 1 -0.4852 1.1194 -5.1276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050786548.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:21 Heat of formation + Delta-G solvation = -24.582171 kcal Electronic energy + Delta-G solvation = -22902.668879 eV Core-core repulsion = 19455.414091 eV Total energy + Delta-G solvation = -3447.254789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.27620 -39.21548 -38.34410 -35.44754 -33.65285 -32.70337 -31.81596 -31.11523 -29.49970 -27.51944 -25.67372 -23.36432 -22.88932 -21.84521 -21.33967 -20.04839 -19.66402 -18.07001 -16.77124 -16.06108 -15.97328 -15.87103 -15.66607 -15.07483 -14.91756 -14.42419 -14.06955 -13.81304 -13.67825 -13.15779 -12.68073 -12.66672 -12.62819 -12.35000 -12.11758 -11.89696 -11.57502 -10.93397 -10.83629 -10.78791 -10.25706 -9.92104 -9.78451 -9.74050 -9.55560 -9.17208 -8.64613 -8.46708 -8.16362 -6.72420 -6.09502 -3.74372 1.50636 2.66599 3.12722 3.24938 3.35785 3.38923 3.70015 3.88490 4.31642 4.40607 4.71624 5.05878 5.17184 5.18991 5.35148 5.45195 5.57677 5.67770 5.83246 5.90705 5.93561 5.94578 6.01139 6.05638 6.13258 6.21146 6.28326 6.42468 6.61249 6.61695 6.75738 7.00823 7.23211 7.61634 7.95309 8.18498 8.30963 8.72403 8.77962 9.51912 9.98698 11.02795 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.007207 C = 0.005643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.136860 B = 3884.191961 C = 4960.854206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.050 3.950 3 Si 0.847 3.153 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.236 1.236 7 C -0.274 4.274 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.102 3.898 11 C 0.042 3.958 12 O -0.389 6.389 13 C 0.056 3.944 14 C 0.122 3.878 15 H 0.045 0.955 16 C 0.139 3.861 17 N -0.675 5.675 18 C 0.597 3.403 19 O -0.547 6.547 20 C -0.053 4.053 21 C -0.139 4.139 22 C -0.229 4.229 23 C -0.014 4.014 24 O -0.152 6.152 25 H 0.265 0.735 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.415 0.585 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 0.093 -5.800 7.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.153 4.153 3 Si 0.676 3.324 4 H -0.210 1.210 5 H -0.226 1.226 6 H -0.161 1.161 7 C -0.402 4.402 8 H 0.095 0.905 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.036 4.036 12 O -0.308 6.308 13 C -0.023 4.023 14 C 0.016 3.984 15 H 0.063 0.937 16 C 0.015 3.985 17 N -0.324 5.324 18 C 0.382 3.618 19 O -0.428 6.428 20 C -0.105 4.105 21 C -0.160 4.160 22 C -0.248 4.248 23 C -0.085 4.085 24 O -0.046 6.046 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.253 0.747 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.816 -0.438 -5.646 7.434 hybrid contribution -0.427 1.531 -0.032 1.589 sum 4.389 1.093 -5.678 7.259 Atomic orbital electron populations 1.69780 1.06013 1.26890 1.50620 1.25746 0.95053 0.98018 0.96495 0.87641 0.81417 0.83996 0.79363 1.20966 1.22575 1.16115 1.18635 0.80004 0.93374 1.48232 0.90491 1.44346 1.03211 1.59379 1.26346 1.22374 0.95662 0.93594 0.90644 1.23154 0.92674 0.96668 0.91067 1.87821 1.33824 1.66849 1.42266 1.22879 0.96039 0.92727 0.90660 1.21575 0.91884 0.93658 0.91281 0.93708 1.21160 0.91847 0.93024 0.92501 1.45797 1.37929 1.12158 1.36500 1.16510 0.79568 0.86098 0.79581 1.90800 1.69742 1.12774 1.69481 1.22238 1.04223 0.80733 1.03350 1.21835 0.96533 1.00437 0.97201 1.21734 1.05441 0.92032 1.05607 1.24292 0.92119 1.00233 0.91834 1.84158 1.48648 1.21756 1.50026 0.92546 0.90797 0.94031 0.93331 0.89961 0.93012 0.89454 0.90907 0.91884 0.74670 0.82677 0.83117 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.97 55.49 0.78 -24.78 16 2 C 0.05 1.31 5.36 -17.43 -0.09 1.22 16 3 Si 0.85 19.69 26.73 -169.99 -4.54 15.14 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.24 -5.04 3.87 56.52 0.22 -4.82 16 7 C -0.27 -6.88 6.66 -15.06 -0.10 -6.98 16 8 H 0.08 2.21 7.11 -52.48 -0.37 1.84 16 9 N -0.61 -13.01 2.45 -164.29 -0.40 -13.42 16 10 C 0.10 2.03 4.27 -3.52 -0.02 2.01 16 11 C 0.04 0.72 6.99 37.31 0.26 0.98 16 12 O -0.39 -6.85 10.74 -35.23 -0.38 -7.23 16 13 C 0.06 0.91 6.29 37.31 0.23 1.14 16 14 C 0.12 2.25 3.20 -67.43 -0.22 2.04 16 15 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 16 C 0.14 2.57 4.50 -4.04 -0.02 2.56 16 17 N -0.67 -13.79 4.12 -61.62 -0.25 -14.04 16 18 C 0.60 12.56 7.79 -12.86 -0.10 12.46 16 19 O -0.55 -12.31 16.87 5.19 0.09 -12.23 16 20 C -0.05 -1.03 7.13 -36.80 -0.26 -1.29 16 21 C -0.14 -2.34 10.62 -39.39 -0.42 -2.76 16 22 C -0.23 -3.23 10.87 -39.89 -0.43 -3.66 16 23 C -0.01 -0.21 12.08 29.63 0.36 0.15 16 24 O -0.15 -2.88 10.40 5.01 0.05 -2.83 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H 0.07 1.54 6.86 -51.93 -0.36 1.18 16 27 H 0.04 0.85 6.13 -51.93 -0.32 0.53 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.07 1.48 7.56 -51.93 -0.39 1.09 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.42 8.96 7.09 -40.82 -0.29 8.67 16 35 H 0.16 2.39 8.06 -52.49 -0.42 1.96 16 36 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -30.71 305.18 -5.72 -36.43 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.85 Total: 10.49 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -0.80 Total: 7.87 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.12 Total: -52.25 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.24 Total: -22.28 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.54 Total: 15.14 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.71 -5.72 -36.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050786548.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.850 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds