Wall clock time and date at job start Tue Mar 31 2020 01:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48501 * 109.47254 * 270.00282 * 3 2 1 5 5 H 1.48500 * 109.47231 * 30.00498 * 3 2 1 6 6 H 1.48503 * 109.47035 * 150.00295 * 3 2 1 7 7 C 1.38814 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99700 * 190.76884 * 7 2 1 9 9 N 1.36937 * 120.00157 * 10.77907 * 7 2 1 10 10 C 1.47170 * 120.99403 * 31.07006 * 9 7 2 11 11 C 1.53297 * 108.41281 * 129.51074 * 10 9 7 12 12 O 1.42965 * 109.22045 * 52.28424 * 11 10 9 13 13 C 1.42960 * 114.16689 * 297.41663 * 12 11 10 14 14 C 1.47152 * 120.98065 * 211.05642 * 9 7 2 15 15 H 1.08996 * 109.68197 * 110.74619 * 14 9 7 16 16 C 1.53000 * 109.68332 * 350.22594 * 14 9 7 17 17 N 1.46504 * 109.46490 * 61.29049 * 16 14 9 18 18 C 1.34784 * 119.99555 * 180.02562 * 17 16 14 19 19 O 1.21618 * 119.99934 * 359.97438 * 18 17 16 20 20 C 1.47378 * 119.99826 * 180.02562 * 18 17 16 21 21 C 1.47018 * 127.18985 * 180.02562 * 20 18 17 22 22 C 1.34178 * 105.95033 * 179.97438 * 21 20 18 23 23 O 1.34208 * 109.12997 * 359.97438 * 22 21 20 24 24 C 1.33658 * 110.90612 * 359.76004 * 23 22 21 25 25 H 0.96997 * 119.99675 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.67906 * 9.77058 * 10 9 7 27 27 H 1.08997 * 109.65037 * 249.24045 * 10 9 7 28 28 H 1.08997 * 109.50920 * 292.35721 * 11 10 9 29 29 H 1.08996 * 109.50873 * 172.20745 * 11 10 9 30 30 H 1.08999 * 109.51421 * 302.65783 * 13 12 11 31 31 H 1.08993 * 109.55502 * 182.52950 * 13 12 11 32 32 H 1.08998 * 109.47364 * 301.29644 * 16 14 9 33 33 H 1.08994 * 109.47192 * 181.28771 * 16 14 9 34 34 H 0.97000 * 120.00523 * 359.97438 * 17 16 14 35 35 H 1.08001 * 127.02810 * 359.93859 * 21 20 18 36 36 H 1.08007 * 125.43230 * 180.02562 * 22 21 20 37 37 H 1.08000 * 125.80326 * 180.26564 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0759 -1.2105 0.1742 9 7 1.3436 -2.3775 -0.2229 10 6 0.1526 -2.4217 -1.0863 11 6 0.3380 -3.5480 -2.1096 12 8 0.6699 -4.7574 -1.4234 13 6 1.9023 -4.7013 -0.7012 14 6 1.7972 -3.6340 0.3943 15 1 1.0785 -3.9525 1.1493 16 6 3.1671 -3.4246 1.0428 17 7 3.0600 -2.4084 2.0927 18 6 4.1495 -2.0573 2.8043 19 8 5.2213 -2.5844 2.5751 20 6 4.0417 -1.0355 3.8608 21 6 5.1194 -0.5355 4.7268 22 6 4.5538 0.3802 5.5280 23 8 3.2490 0.4796 5.2299 24 6 2.9225 -0.3512 4.2351 25 1 -0.4849 0.8400 0.0004 26 1 0.0396 -1.4695 -1.6047 27 1 -0.7321 -2.6178 -0.4806 28 1 1.1426 -3.2866 -2.7968 29 1 -0.5875 -3.6883 -2.6679 30 1 2.7127 -4.4442 -1.3833 31 1 2.1032 -5.6712 -0.2464 32 1 3.8797 -3.0930 0.2876 33 1 3.5099 -4.3628 1.4788 34 1 2.2052 -1.9877 2.2752 35 1 6.1547 -0.8429 4.7200 36 1 5.0669 0.9474 6.2906 37 1 1.9392 -0.4636 3.8029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050822426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:53 Heat of formation + Delta-G solvation = -33.640846 kcal Electronic energy + Delta-G solvation = -22711.722548 eV Core-core repulsion = 19264.074946 eV Total energy + Delta-G solvation = -3447.647602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.30976 -39.15821 -38.20175 -35.32681 -33.61414 -32.66958 -31.56960 -30.52053 -29.50123 -27.24782 -25.68926 -23.49834 -23.00494 -21.62058 -21.21291 -19.79834 -19.50479 -18.15630 -16.71898 -16.01778 -15.87767 -15.77135 -15.55871 -14.86768 -14.64388 -14.45080 -14.30488 -13.81797 -13.68436 -13.23130 -12.86570 -12.74926 -12.56349 -12.19068 -11.89533 -11.58061 -11.07746 -10.93172 -10.78007 -10.44494 -10.27150 -10.08726 -9.70861 -9.60221 -9.57090 -9.01394 -8.72878 -8.63859 -8.28119 -6.78271 -5.95576 -3.45706 1.65242 2.26236 3.11952 3.25688 3.34379 3.37851 3.71170 3.88160 4.30696 4.50753 4.83468 4.95987 5.10934 5.21765 5.35718 5.56084 5.66584 5.73764 5.80965 5.86626 6.00076 6.07477 6.13201 6.14867 6.22257 6.30308 6.45144 6.49682 6.72418 7.03895 7.05687 7.13060 7.45274 7.66648 7.83883 8.18069 8.24598 8.79581 9.01166 9.61077 10.20297 11.10447 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.016643 B = 0.006982 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.969931 B = 4009.523656 C = 5154.146857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.010 3.990 3 Si 0.892 3.108 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.256 4.256 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.143 3.857 11 C 0.035 3.965 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.042 0.958 16 C 0.137 3.863 17 N -0.691 5.691 18 C 0.580 3.420 19 O -0.561 6.561 20 C -0.230 4.230 21 C -0.166 4.166 22 C -0.052 4.052 23 O -0.178 6.178 24 C 0.027 3.973 25 H 0.256 0.744 26 H 0.092 0.908 27 H 0.030 0.970 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.047 0.953 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.412 0.588 35 H 0.156 0.844 36 H 0.205 0.795 37 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.245 -2.315 6.034 7.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.721 3.279 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.060 0.940 16 C 0.013 3.987 17 N -0.342 5.342 18 C 0.367 3.633 19 O -0.441 6.441 20 C -0.234 4.234 21 C -0.186 4.186 22 C -0.118 4.118 23 O -0.073 6.073 24 C -0.043 4.043 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.250 0.750 35 H 0.174 0.826 36 H 0.221 0.779 37 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.560 -2.513 6.006 7.420 hybrid contribution 0.290 1.400 -0.150 1.437 sum 3.849 -1.113 5.856 7.096 Atomic orbital electron populations 1.69981 1.05118 1.25710 1.53524 1.25120 0.95277 0.98111 1.00406 0.86441 0.79461 0.83842 0.78170 1.21241 1.21461 1.20080 1.19265 0.91403 0.83309 1.44518 0.90842 1.44097 1.31900 1.02853 1.52848 1.21428 0.88847 0.96856 0.91058 1.23353 0.99147 0.86518 0.95313 1.87802 1.40171 1.36061 1.67061 1.22858 0.86673 0.98700 0.94070 1.21440 0.93649 0.89322 0.93835 0.94042 1.21177 0.97602 0.90251 0.89697 1.45837 1.11889 1.41244 1.35197 1.17223 0.84156 0.81239 0.80633 1.90714 1.27973 1.55908 1.69554 1.21608 0.94382 1.04336 1.03102 1.22746 1.00068 0.98942 0.96819 1.23849 0.81350 1.03037 1.03582 1.83781 1.26881 1.52355 1.44277 1.24674 1.00252 0.90438 0.88950 0.93401 0.88938 0.95221 0.94112 0.90224 0.93471 0.89857 0.91357 0.92160 0.75014 0.82635 0.77870 0.76827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.48 11.13 55.49 0.62 -22.86 16 2 C 0.01 0.26 5.06 -17.43 -0.09 0.17 16 3 Si 0.89 20.54 29.57 -169.99 -5.03 15.52 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.26 -6.18 7.11 -15.06 -0.11 -6.29 16 8 H 0.07 1.84 5.81 -52.49 -0.30 1.54 16 9 N -0.59 -13.25 3.03 -164.28 -0.50 -13.75 16 10 C 0.14 3.19 5.38 -3.52 -0.02 3.17 16 11 C 0.03 0.65 6.99 37.31 0.26 0.91 16 12 O -0.39 -7.51 10.74 -35.23 -0.38 -7.89 16 13 C 0.06 0.97 6.29 37.31 0.23 1.21 16 14 C 0.12 2.38 3.20 -67.42 -0.22 2.17 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.52 4.44 -4.04 -0.02 2.50 16 17 N -0.69 -13.03 3.79 -61.40 -0.23 -13.26 16 18 C 0.58 11.40 7.81 -12.54 -0.10 11.30 16 19 O -0.56 -12.48 16.98 5.26 0.09 -12.39 16 20 C -0.23 -3.97 6.31 -103.28 -0.65 -4.62 16 21 C -0.17 -2.46 11.01 -37.46 -0.41 -2.87 16 22 C -0.05 -0.65 12.03 29.30 0.35 -0.29 16 23 O -0.18 -2.54 10.52 7.66 0.08 -2.46 16 24 C 0.03 0.42 11.61 30.08 0.35 0.77 16 25 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 26 H 0.09 2.27 6.32 -51.93 -0.33 1.94 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.41 7.82 6.34 -40.82 -0.26 7.56 16 35 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 36 H 0.20 1.57 8.06 -52.48 -0.42 1.14 16 37 H 0.22 2.97 7.47 -52.49 -0.39 2.57 16 LS Contribution 309.22 15.07 4.66 4.66 Total: -1.00 -29.91 309.22 -5.72 -35.62 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -4.62 Total: 8.70 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.41 Total: 8.12 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.11 Total: -49.88 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.21 Total: -22.74 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.91 -5.72 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050822426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.981 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds