Wall clock time and date at job start Tue Mar 31 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35133 * 125.61437 * 2 1 4 4 C 1.40364 * 107.11157 * 179.71158 * 3 2 1 5 5 C 1.36546 * 106.71233 * 0.41307 * 4 3 2 6 6 C 1.46653 * 125.99125 * 179.85394 * 5 4 3 7 7 O 1.21703 * 119.99933 * 359.71575 * 6 5 4 8 8 N 1.34775 * 120.00260 * 179.70808 * 6 5 4 9 9 C 1.46504 * 120.00212 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.88216 * 37.43022 * 9 8 6 11 11 C 1.54905 * 111.00570 * 273.55450 * 9 8 6 12 12 N 1.47425 * 104.83192 * 204.87750 * 11 9 8 13 13 C 1.36936 * 125.64932 * 204.08983 * 12 11 9 14 14 H 1.07997 * 120.00015 * 26.01017 * 13 12 11 15 15 C 1.38810 * 119.99782 * 206.00870 * 13 12 11 16 16 N 1.31628 * 119.99789 * 214.47366 * 15 13 12 17 17 Si 1.86792 * 120.00337 * 34.48312 * 15 13 12 18 18 H 1.48500 * 109.47151 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47142 * 239.99823 * 17 15 13 20 20 H 1.48508 * 109.47417 * 119.99705 * 17 15 13 21 21 C 1.47024 * 108.70208 * 24.35539 * 12 11 9 22 22 C 1.54338 * 107.26406 * 358.58720 * 21 12 11 23 23 H 1.08993 * 110.51632 * 96.45399 * 22 21 12 24 24 O 1.42903 * 110.99933 * 219.60129 * 22 21 12 25 25 O 1.33931 * 125.61705 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46697 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46870 * 300.01370 * 1 2 3 28 28 H 1.09003 * 109.47317 * 60.01850 * 1 2 3 29 29 H 1.07990 * 126.44181 * 359.96608 * 3 2 1 30 30 H 1.08002 * 126.64345 * 180.29561 * 4 3 2 31 31 H 0.97004 * 119.99707 * 0.02562 * 8 6 5 32 32 H 1.08996 * 110.37003 * 86.03685 * 11 9 8 33 33 H 1.09008 * 110.46088 * 323.76050 * 11 9 8 34 34 H 0.97000 * 119.99944 * 5.09675 * 16 15 13 35 35 H 1.08994 * 109.88192 * 118.13329 * 21 12 11 36 36 H 1.08998 * 109.88047 * 239.29799 * 21 12 11 37 37 H 0.96697 * 114.00240 * 293.78166 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 0.0068 5 6 3.5824 -0.7116 0.0012 6 6 4.7415 -1.6101 0.0020 7 8 5.8681 -1.1499 0.0029 8 7 4.5591 -2.9454 0.0019 9 6 5.7170 -3.8430 0.0022 10 1 6.5194 -3.4418 0.6215 11 6 6.2112 -4.1123 -1.4410 12 7 6.9012 -5.4129 -1.3670 13 6 7.8744 -5.8500 -2.2255 14 1 8.4897 -5.1361 -2.7528 15 6 8.0700 -7.2107 -2.4180 16 7 9.2824 -7.6780 -2.6288 17 14 6.6129 -8.3787 -2.3781 18 1 5.3683 -7.6090 -2.1255 19 1 6.8067 -9.3751 -1.2943 20 1 6.5052 -9.0807 -3.6824 21 6 6.3669 -6.1657 -0.2227 22 6 5.3165 -5.2685 0.4655 23 1 4.3140 -5.5193 0.1189 24 8 5.4004 -5.3802 1.8877 25 8 2.2870 -1.0888 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3634 0.5136 -0.8902 29 1 1.9612 2.1259 -0.0005 30 1 4.5112 1.2704 0.0130 31 1 3.6611 -3.3123 0.0009 32 1 6.9043 -3.3325 -1.7563 33 1 5.3671 -4.1692 -2.1284 34 1 10.0472 -7.0836 -2.5764 35 1 5.8997 -7.0869 -0.5706 36 1 7.1703 -6.3963 0.4769 37 1 5.1602 -6.2526 2.2286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076714055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:57 Heat of formation + Delta-G solvation = -37.567993 kcal Electronic energy + Delta-G solvation = -21756.452651 eV Core-core repulsion = 18308.634755 eV Total energy + Delta-G solvation = -3447.817896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.87893 -39.69744 -38.06603 -35.34779 -34.35410 -33.41635 -32.30859 -31.98122 -29.03748 -27.84940 -26.96273 -24.08853 -22.46518 -21.77573 -20.90765 -20.46175 -20.17349 -18.48958 -17.53377 -17.11297 -16.65127 -16.20166 -15.70857 -14.86845 -14.77022 -14.47342 -13.97574 -13.63127 -13.55137 -13.33853 -13.21148 -13.16966 -12.98818 -12.74684 -12.57611 -12.24365 -11.82555 -11.62668 -11.11126 -10.81609 -10.41364 -10.31507 -10.21820 -9.92985 -9.52860 -9.34277 -9.10323 -8.65691 -8.37056 -7.06230 -6.43230 -3.30714 0.91563 2.13103 2.42637 3.14237 3.17909 3.40705 3.49246 3.61531 4.26667 4.34491 4.58320 4.68605 4.71076 4.81133 4.97844 5.04053 5.14246 5.25374 5.27342 5.35378 5.43505 5.46971 5.62815 5.74150 5.83788 5.86536 6.16624 6.28611 6.39026 6.54609 6.61197 6.63416 6.78045 7.48981 7.77845 7.81694 8.11601 8.33244 8.94761 9.52227 10.24032 10.99661 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027942 B = 0.003970 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.829017 B = 7051.750580 C = 7229.853894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.014 3.986 3 C -0.224 4.224 4 C -0.119 4.119 5 C -0.074 4.074 6 C 0.603 3.397 7 O -0.515 6.515 8 N -0.704 5.704 9 C 0.140 3.860 10 H 0.108 0.892 11 C 0.122 3.878 12 N -0.596 5.596 13 C -0.343 4.343 14 H 0.072 0.928 15 C 0.002 3.998 16 N -0.897 5.897 17 Si 1.035 2.965 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.295 1.295 21 C 0.098 3.902 22 C 0.085 3.915 23 H 0.067 0.933 24 O -0.559 6.559 25 O -0.163 6.163 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.403 0.597 32 H 0.057 0.943 33 H 0.027 0.973 34 H 0.269 0.731 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.550 12.926 7.498 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.038 4.038 3 C -0.243 4.243 4 C -0.140 4.140 5 C -0.126 4.126 6 C 0.388 3.612 7 O -0.393 6.393 8 N -0.354 5.354 9 C 0.035 3.965 10 H 0.126 0.874 11 C -0.005 4.005 12 N -0.324 5.324 13 C -0.470 4.470 14 H 0.090 0.910 15 C -0.202 4.202 16 N -0.534 5.534 17 Si 0.866 3.134 18 H -0.208 1.208 19 H -0.219 1.219 20 H -0.223 1.223 21 C -0.028 4.028 22 C 0.025 3.975 23 H 0.084 0.916 24 O -0.364 6.364 25 O -0.059 6.059 26 H 0.098 0.902 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.173 0.827 30 H 0.178 0.822 31 H 0.237 0.763 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -18.958 11.947 7.168 23.527 hybrid contribution -0.214 0.933 0.145 0.968 sum -19.172 12.880 7.314 24.226 Atomic orbital electron populations 1.20408 0.84612 1.04478 1.03929 1.22807 0.94277 0.84153 1.02586 1.21564 0.92363 0.99787 1.10575 1.21953 0.98637 0.92950 1.00455 1.22131 0.81727 0.94731 1.13982 1.16514 0.86029 0.81546 0.77070 1.90911 1.21918 1.75981 1.50443 1.45784 1.10365 1.05311 1.73952 1.22279 0.87899 0.87331 0.98960 0.87362 1.21989 0.95814 0.90815 0.91841 1.44471 1.44147 1.14742 1.29083 1.19849 1.09510 0.92889 1.24765 0.91033 1.26063 1.01387 0.95546 0.97189 1.70847 0.98204 1.37171 1.47139 0.84296 0.76956 0.75716 0.76474 1.20777 1.21934 1.22272 1.22286 0.95111 0.94717 0.90723 1.23048 0.98223 0.95364 0.80909 0.91553 1.86518 1.92090 1.37490 1.20266 1.84010 1.16072 1.34991 1.70805 0.90226 0.89258 0.89218 0.82701 0.82173 0.76273 0.92489 0.95535 0.92057 0.94582 0.93158 0.77473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 36.01 0.37 -0.02 16 2 C 0.01 0.13 7.31 -35.41 -0.26 -0.12 16 3 C -0.22 -2.15 10.77 -39.89 -0.43 -2.58 16 4 C -0.12 -1.46 10.62 -39.39 -0.42 -1.88 16 5 C -0.07 -1.02 7.13 -36.80 -0.26 -1.28 16 6 C 0.60 9.92 7.78 -12.87 -0.10 9.82 16 7 O -0.52 -10.17 16.61 5.19 0.09 -10.09 16 8 N -0.70 -10.89 5.23 -53.04 -0.28 -11.17 16 9 C 0.14 2.58 3.04 -65.78 -0.20 2.38 16 10 H 0.11 2.23 7.73 -51.93 -0.40 1.82 16 11 C 0.12 2.63 6.93 -2.53 -0.02 2.61 16 12 N -0.60 -14.86 3.06 -170.07 -0.52 -15.38 16 13 C -0.34 -9.91 10.24 -15.06 -0.15 -10.06 16 14 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 15 C 0.00 0.07 5.29 -17.43 -0.09 -0.03 16 16 N -0.90 -27.61 13.70 55.49 0.76 -26.85 16 17 Si 1.04 25.49 26.22 -169.99 -4.46 21.03 16 18 H -0.28 -6.44 6.16 56.52 0.35 -6.09 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 C 0.10 2.09 5.82 -3.06 -0.02 2.08 16 22 C 0.08 1.44 3.94 -24.89 -0.10 1.34 16 23 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 24 O -0.56 -8.56 13.40 -35.23 -0.47 -9.03 16 25 O -0.16 -1.96 10.40 4.99 0.05 -1.91 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.16 1.83 8.06 -52.49 -0.42 1.40 16 31 H 0.40 5.17 8.27 -40.82 -0.34 4.83 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 34 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 35 H 0.04 0.79 3.83 -51.93 -0.20 0.59 16 36 H 0.05 1.13 8.06 -51.93 -0.42 0.72 16 37 H 0.38 4.01 9.12 45.56 0.42 4.42 16 LS Contribution 316.91 15.07 4.78 4.78 Total: -1.00 -34.85 316.91 -5.67 -40.52 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.94 Total: 5.85 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.67 Total: 2.24 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.04 Total: -53.40 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.33 Total: -21.03 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -4.46 Total: 21.03 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.85 -5.67 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076714055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.956 kcal (2) G-P(sol) polarization free energy of solvation -34.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds