Wall clock time and date at job start Tue Mar 31 2020 01:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35133 * 125.61437 * 2 1 4 4 C 1.40364 * 107.11157 * 179.71158 * 3 2 1 5 5 C 1.36546 * 106.71233 * 0.41307 * 4 3 2 6 6 C 1.46653 * 125.99125 * 179.85394 * 5 4 3 7 7 O 1.21703 * 119.99933 * 359.71575 * 6 5 4 8 8 N 1.34775 * 120.00260 * 179.70808 * 6 5 4 9 9 C 1.46504 * 120.00212 * 179.97438 * 8 6 5 10 10 H 1.09004 * 110.88216 * 37.43022 * 9 8 6 11 11 C 1.54905 * 111.00570 * 273.55450 * 9 8 6 12 12 N 1.47425 * 104.83192 * 204.87750 * 11 9 8 13 13 C 1.36936 * 125.64932 * 204.08983 * 12 11 9 14 14 H 1.07997 * 120.00015 * 26.01017 * 13 12 11 15 15 C 1.38810 * 119.99782 * 206.00870 * 13 12 11 16 16 N 1.31628 * 119.99789 * 214.47366 * 15 13 12 17 17 Si 1.86792 * 120.00337 * 34.48312 * 15 13 12 18 18 H 1.48500 * 109.47151 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47142 * 239.99823 * 17 15 13 20 20 H 1.48508 * 109.47417 * 119.99705 * 17 15 13 21 21 C 1.47024 * 108.70208 * 24.35539 * 12 11 9 22 22 C 1.54338 * 107.26406 * 358.58720 * 21 12 11 23 23 H 1.08993 * 110.51632 * 96.45399 * 22 21 12 24 24 O 1.42903 * 110.99933 * 219.60129 * 22 21 12 25 25 O 1.33931 * 125.61705 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46697 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46870 * 300.01370 * 1 2 3 28 28 H 1.09003 * 109.47317 * 60.01850 * 1 2 3 29 29 H 1.07990 * 126.44181 * 359.96608 * 3 2 1 30 30 H 1.08002 * 126.64345 * 180.29561 * 4 3 2 31 31 H 0.97004 * 119.99707 * 0.02562 * 8 6 5 32 32 H 1.08996 * 110.37003 * 86.03685 * 11 9 8 33 33 H 1.09008 * 110.46088 * 323.76050 * 11 9 8 34 34 H 0.97000 * 119.99944 * 5.09675 * 16 15 13 35 35 H 1.08994 * 109.88192 * 118.13329 * 21 12 11 36 36 H 1.08998 * 109.88047 * 239.29799 * 21 12 11 37 37 H 0.96697 * 114.00240 * 293.78166 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6531 0.0068 5 6 3.5824 -0.7116 0.0012 6 6 4.7415 -1.6101 0.0020 7 8 5.8681 -1.1499 0.0029 8 7 4.5591 -2.9454 0.0019 9 6 5.7170 -3.8430 0.0022 10 1 6.5194 -3.4418 0.6215 11 6 6.2112 -4.1123 -1.4410 12 7 6.9012 -5.4129 -1.3670 13 6 7.8744 -5.8500 -2.2255 14 1 8.4897 -5.1361 -2.7528 15 6 8.0700 -7.2107 -2.4180 16 7 9.2824 -7.6780 -2.6288 17 14 6.6129 -8.3787 -2.3781 18 1 5.3683 -7.6090 -2.1255 19 1 6.8067 -9.3751 -1.2943 20 1 6.5052 -9.0807 -3.6824 21 6 6.3669 -6.1657 -0.2227 22 6 5.3165 -5.2685 0.4655 23 1 4.3140 -5.5193 0.1189 24 8 5.4004 -5.3802 1.8877 25 8 2.2870 -1.0888 0.0005 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 -0.3634 0.5136 -0.8902 29 1 1.9612 2.1259 -0.0005 30 1 4.5112 1.2704 0.0130 31 1 3.6611 -3.3123 0.0009 32 1 6.9043 -3.3325 -1.7563 33 1 5.3671 -4.1692 -2.1284 34 1 10.0472 -7.0836 -2.5764 35 1 5.8997 -7.0869 -0.5706 36 1 7.1703 -6.3963 0.4769 37 1 5.1602 -6.2526 2.2286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076714055.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:56 Heat of formation + Delta-G solvation = -66.685194 kcal Electronic energy + Delta-G solvation = -21757.715268 eV Core-core repulsion = 18308.634755 eV Total energy + Delta-G solvation = -3449.080513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.73950 -41.08292 -39.54621 -36.83852 -35.83820 -34.36206 -34.03787 -32.95081 -30.64147 -29.38252 -28.02666 -25.86007 -23.60945 -22.69882 -22.55369 -21.96560 -21.31441 -19.89408 -19.36501 -18.45456 -17.71423 -17.54624 -16.76558 -16.45374 -16.15494 -15.86294 -15.53142 -15.14749 -14.71147 -14.55444 -14.37278 -14.14431 -14.04830 -13.98252 -13.71627 -13.39945 -13.33247 -12.97178 -12.79434 -12.71770 -12.04730 -11.71895 -11.65345 -11.26739 -11.07718 -11.05479 -10.66973 -10.39363 -9.50198 -9.16346 -8.72659 -5.56241 -0.06206 1.31648 1.42820 1.46721 1.54554 1.71928 1.98292 2.01163 2.53187 2.83515 2.97701 3.34604 3.49015 3.65768 3.78839 3.87818 3.91608 3.96889 4.23104 4.36237 4.50864 4.57870 4.68738 4.72110 4.76556 4.76605 4.83290 4.94014 4.94436 5.13439 5.20728 5.45138 5.64547 5.80760 6.07171 6.32183 6.72244 6.80072 6.89690 7.37563 8.08441 8.68167 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027942 B = 0.003970 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.829017 B = 7051.750580 C = 7229.853894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.028 3.972 3 C -0.231 4.231 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.602 3.398 7 O -0.562 6.562 8 N -0.691 5.691 9 C 0.152 3.848 10 H 0.080 0.920 11 C 0.124 3.876 12 N -0.616 5.616 13 C -0.348 4.348 14 H 0.028 0.972 15 C -0.049 4.049 16 N -0.929 5.929 17 Si 1.088 2.912 18 H -0.249 1.249 19 H -0.278 1.278 20 H -0.294 1.294 21 C 0.089 3.911 22 C 0.108 3.892 23 H 0.107 0.893 24 O -0.563 6.563 25 O -0.168 6.168 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.186 0.814 30 H 0.159 0.841 31 H 0.419 0.581 32 H 0.027 0.973 33 H 0.043 0.957 34 H 0.253 0.747 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.337 13.040 8.655 28.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 C -0.249 4.249 4 C -0.138 4.138 5 C -0.161 4.161 6 C 0.390 3.610 7 O -0.442 6.442 8 N -0.342 5.342 9 C 0.046 3.954 10 H 0.098 0.902 11 C -0.003 4.003 12 N -0.344 5.344 13 C -0.476 4.476 14 H 0.046 0.954 15 C -0.247 4.247 16 N -0.567 5.567 17 Si 0.911 3.089 18 H -0.173 1.173 19 H -0.204 1.204 20 H -0.221 1.221 21 C -0.036 4.036 22 C 0.048 3.952 23 H 0.125 0.875 24 O -0.372 6.372 25 O -0.065 6.065 26 H 0.104 0.896 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.204 0.796 30 H 0.177 0.823 31 H 0.257 0.743 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -23.800 12.063 8.359 27.961 hybrid contribution 1.265 1.076 -0.199 1.673 sum -22.535 13.139 8.160 27.332 Atomic orbital electron populations 1.20693 0.81133 1.05626 1.05952 1.23787 0.96001 0.83347 0.99290 1.21922 0.90883 1.01507 1.10622 1.22236 1.00161 0.92570 0.98868 1.21564 0.81956 0.94530 1.18038 1.16849 0.86387 0.81854 0.75907 1.90880 1.24009 1.76769 1.52588 1.45542 1.10196 1.04777 1.73662 1.21813 0.88447 0.88997 0.96193 0.90177 1.21988 0.95336 0.88454 0.94495 1.44463 1.44163 1.16206 1.29606 1.19652 1.10052 0.92548 1.25376 0.95438 1.27426 1.02972 0.97709 0.96615 1.70978 0.98691 1.37026 1.50045 0.83623 0.74316 0.73980 0.76953 1.17336 1.20360 1.22135 1.22502 0.95902 0.95751 0.89453 1.22792 0.98396 0.92443 0.81612 0.87504 1.86489 1.92249 1.39610 1.18823 1.83994 1.15316 1.36080 1.71126 0.89574 0.86995 0.87133 0.79646 0.82315 0.74331 0.95432 0.93971 0.93770 0.93553 0.94912 0.74650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.41 71.24 0.74 0.30 16 2 C 0.03 0.44 7.31 24.97 0.18 0.62 16 3 C -0.23 -3.77 10.77 22.07 0.24 -3.53 16 4 C -0.12 -2.76 10.62 22.39 0.24 -2.52 16 5 C -0.11 -2.95 7.13 24.07 0.17 -2.78 16 6 C 0.60 19.98 7.78 86.44 0.67 20.65 16 7 O -0.56 -23.21 16.61 -4.36 -0.07 -23.28 16 8 N -0.69 -20.65 5.23 -439.94 -2.30 -22.95 16 9 C 0.15 5.52 3.04 46.38 0.14 5.66 16 10 H 0.08 3.40 7.73 -2.39 -0.02 3.38 16 11 C 0.12 5.40 6.93 86.85 0.60 6.01 16 12 N -0.62 -31.08 3.06 -691.97 -2.12 -33.19 16 13 C -0.35 -20.92 10.24 84.03 0.86 -20.06 16 14 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 15 C -0.05 -2.93 5.29 84.86 0.45 -2.48 16 16 N -0.93 -59.21 13.70 21.65 0.30 -58.92 16 17 Si 1.09 50.65 26.22 68.60 1.80 52.45 16 18 H -0.25 -10.18 6.16 99.48 0.61 -9.57 16 19 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 21 C 0.09 3.69 5.82 86.73 0.50 4.20 16 22 C 0.11 3.36 3.94 31.79 0.13 3.49 16 23 H 0.11 2.58 8.00 -2.39 -0.02 2.56 16 24 O -0.56 -15.50 13.40 -148.98 -2.00 -17.50 16 25 O -0.17 -3.68 10.40 -5.07 -0.05 -3.73 16 26 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.19 1.76 8.06 -2.92 -0.02 1.74 16 30 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 31 H 0.42 9.68 8.27 -92.71 -0.77 8.91 16 32 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 34 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 35 H 0.05 1.86 3.83 -2.39 -0.01 1.85 16 36 H 0.03 1.46 8.06 -2.39 -0.02 1.44 16 37 H 0.40 6.89 9.12 -74.06 -0.68 6.21 16 Total: -1.00 -80.57 316.91 0.02 -80.55 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -0.46 Total: 17.01 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.93 Total: 9.56 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -4.12 Total: -115.06 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -2.12 Total: -44.51 kcal Atomic # 14 Polarization: 50.65 SS G_CDS: 1.80 Total: 52.45 kcal Total: -80.57 0.02 -80.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076714055.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.866 kcal (2) G-P(sol) polarization free energy of solvation -80.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds