Wall clock time and date at job start Tue Mar 31 2020 01:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33654 * 125.80540 * 2 1 4 4 C 1.34210 * 110.91172 * 180.02562 * 3 2 1 5 5 C 1.34184 * 109.12359 * 0.02562 * 4 3 2 6 6 C 1.36423 * 125.80170 * 180.02562 * 2 1 3 7 7 C 1.47383 * 127.18809 * 359.97438 * 6 2 1 8 8 O 1.21613 * 119.99870 * 359.97438 * 7 6 2 9 9 N 1.34780 * 119.99601 * 179.97438 * 7 6 2 10 10 C 1.46499 * 119.99544 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.88915 * 34.30075 * 10 9 7 12 12 C 1.54911 * 111.00429 * 270.41518 * 10 9 7 13 13 N 1.47461 * 104.81531 * 204.95078 * 12 10 9 14 14 C 1.36940 * 125.63482 * 204.14385 * 13 12 10 15 15 H 1.07996 * 119.99474 * 359.94169 * 14 13 12 16 16 C 1.38805 * 119.99883 * 179.97438 * 14 13 12 17 17 N 1.31618 * 120.00634 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99688 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47277 * 90.00231 * 18 16 14 20 20 H 1.48501 * 109.47556 * 210.00223 * 18 16 14 21 21 H 1.48498 * 109.47381 * 330.00313 * 18 16 14 22 22 C 1.47033 * 108.72059 * 24.07478 * 13 12 10 23 23 C 1.54320 * 107.26910 * 358.97010 * 22 13 12 24 24 H 1.09009 * 110.71561 * 96.17228 * 23 22 13 25 25 O 1.42892 * 110.72350 * 219.44334 * 23 22 13 26 26 H 1.09003 * 109.46762 * 269.94780 * 1 2 3 27 27 H 1.08999 * 109.46651 * 29.93930 * 1 2 3 28 28 H 1.08995 * 109.46962 * 149.94757 * 1 2 3 29 29 H 1.08001 * 125.44367 * 180.26703 * 4 3 2 30 30 H 1.07993 * 127.02047 * 179.97438 * 5 4 3 31 31 H 0.96995 * 120.00107 * 0.02562 * 9 7 6 32 32 H 1.09000 * 110.36634 * 323.75878 * 12 10 9 33 33 H 1.09001 * 110.36255 * 86.08211 * 12 10 9 34 34 H 0.97001 * 120.00491 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.87976 * 239.55518 * 22 13 12 36 36 H 1.08998 * 110.00892 * 118.45991 * 22 13 12 37 37 H 0.96703 * 114.00550 * 293.52828 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 -0.0006 5 6 3.6849 -0.5992 -0.0015 6 6 2.3051 -1.1065 -0.0005 7 6 1.8739 -2.5158 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7930 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 1 1.4460 -5.0277 -0.5758 12 6 2.1926 -5.4313 1.4436 13 7 2.3758 -6.8905 1.3357 14 6 1.8784 -7.8236 2.2058 15 1 1.2965 -7.5095 3.0597 16 6 2.1226 -9.1729 1.9907 17 7 2.8327 -9.5557 0.9507 18 14 1.4435 -10.4457 3.1773 19 1 0.0944 -10.8727 2.7265 20 1 2.3488 -11.6223 3.2129 21 1 1.3470 -9.8542 4.5360 22 6 3.1795 -7.1780 0.1384 23 6 3.4874 -5.8274 -0.5418 24 1 4.4682 -5.4589 -0.2410 25 8 3.4047 -5.9467 -1.9633 26 1 -0.3633 -0.0009 1.0277 27 1 -0.3632 0.8905 -0.5129 28 1 -0.3633 -0.8895 -0.5146 29 1 4.4174 1.4283 0.0034 30 1 4.5928 -1.1841 -0.0025 31 1 3.7381 -3.2835 -0.0019 32 1 2.9514 -5.0014 2.0974 33 1 1.1946 -5.2002 1.8159 34 1 3.0037 -10.4986 0.8006 35 1 2.6155 -7.8157 -0.5422 36 1 4.1094 -7.6703 0.4228 37 1 4.0849 -6.5147 -2.3506 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076724011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:58:00 Heat of formation + Delta-G solvation = -68.126929 kcal Electronic energy + Delta-G solvation = -21838.527893 eV Core-core repulsion = 18389.384862 eV Total energy + Delta-G solvation = -3449.143031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.51637 -40.88169 -39.31827 -36.69637 -35.62502 -34.13633 -33.49747 -32.71702 -30.27970 -28.94793 -27.75468 -26.38469 -24.32377 -22.51793 -22.27952 -21.62105 -20.80095 -19.17597 -18.80059 -18.23663 -17.36908 -17.28332 -16.83787 -16.52004 -15.91767 -15.72253 -15.61998 -14.98812 -14.48869 -14.45791 -14.25956 -14.04113 -13.84190 -13.80404 -13.67105 -13.17360 -13.16953 -12.77250 -12.73997 -12.65817 -12.09528 -11.89451 -11.55946 -11.22742 -10.88754 -10.82901 -10.77682 -10.19664 -9.51194 -8.98280 -7.89581 -5.27096 0.32920 1.15655 1.45669 1.48064 1.56456 1.81168 2.15708 2.30247 2.47976 3.10737 3.31212 3.52734 3.62701 3.73155 3.89143 3.93024 4.03582 4.16139 4.37338 4.42599 4.54000 4.62272 4.65907 4.76150 4.80520 4.88252 5.01029 5.22859 5.35122 5.38844 5.42549 5.46111 5.65048 6.05207 6.12278 6.52973 6.85650 7.03703 7.19422 7.67841 8.30453 9.20195 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.003872 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.489531 B = 7229.832016 C = 7688.930151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.069 3.931 3 O -0.180 6.180 4 C -0.027 4.027 5 C -0.198 4.198 6 C -0.270 4.270 7 C 0.584 3.416 8 O -0.580 6.580 9 N -0.694 5.694 10 C 0.155 3.845 11 H 0.072 0.928 12 C 0.132 3.868 13 N -0.622 5.622 14 C -0.251 4.251 15 H 0.081 0.919 16 C -0.059 4.059 17 N -0.948 5.948 18 Si 0.981 3.019 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.162 3.838 23 C 0.092 3.908 24 H 0.095 0.905 25 O -0.569 6.569 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.253 0.747 30 H 0.180 0.820 31 H 0.414 0.586 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.250 0.750 35 H 0.021 0.979 36 H 0.028 0.972 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.436 20.949 -3.555 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.016 3.984 3 O -0.076 6.076 4 C -0.092 4.092 5 C -0.217 4.217 6 C -0.275 4.275 7 C 0.374 3.626 8 O -0.461 6.461 9 N -0.345 5.345 10 C 0.048 3.952 11 H 0.090 0.910 12 C 0.005 3.995 13 N -0.349 5.349 14 C -0.379 4.379 15 H 0.099 0.901 16 C -0.253 4.253 17 N -0.596 5.596 18 Si 0.809 3.191 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.194 1.194 22 C 0.036 3.964 23 C 0.032 3.968 24 H 0.113 0.887 25 O -0.376 6.376 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.268 0.732 30 H 0.197 0.803 31 H 0.252 0.748 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.031 21.225 -3.451 21.878 hybrid contribution 0.616 -1.738 0.444 1.897 sum 4.646 19.486 -3.007 20.257 Atomic orbital electron populations 1.20615 0.83166 1.05164 1.04900 1.23061 0.94854 0.83254 0.97229 1.83789 1.18145 1.34412 1.71241 1.24720 0.83420 0.96732 1.04314 1.23177 0.95927 0.95435 1.07135 1.21162 0.95645 0.92369 1.18283 1.17655 0.85079 0.84879 0.74947 1.90745 1.18233 1.84745 1.52400 1.45440 1.10256 1.04271 1.74537 1.21744 0.97625 0.79877 0.95960 0.90963 1.21925 0.98765 0.84264 0.94536 1.44523 1.61671 1.00891 1.27851 1.19456 1.27393 0.87078 1.03982 0.90118 1.25643 1.00828 0.98714 1.00086 1.70123 1.44253 1.14946 1.30302 0.85047 0.77215 0.78314 0.78535 1.21454 1.21508 1.19356 1.21627 0.94475 0.92573 0.87743 1.23140 0.97662 0.94790 0.81247 0.88726 1.86436 1.59480 1.72597 1.19134 0.88693 0.87969 0.89418 0.73154 0.80253 0.74839 0.94134 0.94784 0.94092 0.96049 0.95395 0.75309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.69 9.89 71.24 0.70 -0.98 16 2 C 0.07 1.62 7.37 25.26 0.19 1.81 16 3 O -0.18 -3.44 10.52 4.50 0.05 -3.39 16 4 C -0.03 -0.37 12.03 66.89 0.80 0.44 16 5 C -0.20 -3.45 10.60 23.65 0.25 -3.20 16 6 C -0.27 -6.99 6.31 -18.99 -0.12 -7.11 16 7 C 0.58 19.31 7.81 86.65 0.68 19.99 16 8 O -0.58 -23.43 14.54 -4.07 -0.06 -23.49 16 9 N -0.69 -21.23 5.21 -439.25 -2.29 -23.52 16 10 C 0.15 5.98 3.09 46.38 0.14 6.13 16 11 H 0.07 3.30 7.63 -2.39 -0.02 3.29 16 12 C 0.13 5.82 6.93 86.85 0.60 6.42 16 13 N -0.62 -32.87 3.40 -691.88 -2.35 -35.22 16 14 C -0.25 -14.41 10.28 84.03 0.86 -13.55 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 17 N -0.95 -56.42 10.31 21.65 0.22 -56.19 16 18 Si 0.98 46.07 29.55 68.60 2.03 48.10 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.16 7.88 5.15 86.73 0.45 8.33 16 23 C 0.09 3.34 3.96 31.78 0.13 3.47 16 24 H 0.10 2.79 8.00 -2.38 -0.02 2.78 16 25 O -0.57 -19.21 13.39 -148.98 -1.99 -21.20 16 26 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.09 2.23 6.49 -2.39 -0.02 2.22 16 29 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 30 H 0.18 2.12 7.74 -2.91 -0.02 2.10 16 31 H 0.41 9.62 7.71 -92.71 -0.71 8.90 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.59 8.14 -2.39 -0.02 1.58 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.02 1.20 7.30 -2.39 -0.02 1.18 16 36 H 0.03 1.46 7.50 -2.39 -0.02 1.44 16 37 H 0.40 9.81 9.12 -74.06 -0.68 9.13 16 Total: -1.00 -76.91 315.40 0.48 -76.43 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.27 Total: 19.69 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 5.15 Total: 18.80 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -4.42 Total: -114.94 kcal Atomic # 8 Polarization: -46.08 SS G_CDS: -2.01 Total: -48.09 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -76.91 0.48 -76.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076724011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.306 kcal (2) G-P(sol) polarization free energy of solvation -76.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds