Wall clock time and date at job start Tue Mar 31 2020 02:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35124 * 126.44599 * 2 1 4 4 O 1.33925 * 108.77056 * 179.97438 * 3 2 1 5 5 C 1.34918 * 109.38281 * 0.02562 * 4 3 2 6 6 C 1.46657 * 125.98647 * 179.97438 * 5 4 3 7 7 O 1.21695 * 120.00196 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99883 * 0.02562 * 6 5 4 9 9 C 1.46503 * 119.99722 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.64210 * 34.30892 * 9 8 6 11 11 C 1.54321 * 110.72330 * 271.16208 * 9 8 6 12 12 N 1.47021 * 107.27578 * 219.44448 * 11 9 8 13 13 C 1.36931 * 125.65261 * 178.97482 * 12 11 9 14 14 H 1.07997 * 119.99919 * 349.94107 * 13 12 11 15 15 C 1.38811 * 120.00009 * 169.93940 * 13 12 11 16 16 N 1.31616 * 120.00300 * 350.42941 * 15 13 12 17 17 Si 1.86797 * 119.99855 * 170.42278 * 15 13 12 18 18 H 1.48496 * 109.47183 * 94.14364 * 17 15 13 19 19 H 1.48505 * 109.47305 * 214.14185 * 17 15 13 20 20 H 1.48496 * 109.47460 * 334.14251 * 17 15 13 21 21 C 1.47428 * 108.69633 * 358.94079 * 12 11 9 22 22 C 1.55119 * 104.94751 * 24.00594 * 21 12 11 23 23 H 1.08999 * 110.93558 * 81.21097 * 22 21 12 24 24 O 1.42899 * 111.16454 * 205.13076 * 22 21 12 25 25 C 1.36544 * 108.02456 * 359.97438 * 5 4 3 26 26 H 1.09002 * 109.47110 * 90.01667 * 1 2 3 27 27 H 1.09000 * 109.47443 * 210.01804 * 1 2 3 28 28 H 1.09002 * 109.46776 * 330.02256 * 1 2 3 29 29 H 1.08003 * 125.61629 * 0.26849 * 3 2 1 30 30 H 0.97000 * 120.00316 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.88402 * 338.86563 * 11 9 8 32 32 H 1.09000 * 109.88115 * 99.87025 * 11 9 8 33 33 H 0.96998 * 120.00312 * 180.02562 * 16 15 13 34 34 H 1.09003 * 110.36564 * 142.96963 * 21 12 11 35 35 H 1.09003 * 110.36480 * 265.28337 * 21 12 11 36 36 H 0.96697 * 113.99788 * 292.16735 * 24 22 21 37 37 H 1.08003 * 126.64195 * 179.97438 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5858 0.6803 0.0006 5 6 3.6260 -0.6683 0.0004 6 6 4.8378 -1.4943 0.0003 7 8 4.7471 -2.7078 -0.0003 8 7 6.0521 -0.9093 0.0010 9 6 7.2626 -1.7345 0.0003 10 1 7.1056 -2.6466 -0.5755 11 6 7.6972 -2.0676 1.4432 12 7 9.1647 -1.9893 1.4862 13 6 9.9429 -2.1974 2.5935 14 1 9.4844 -2.2813 3.5677 15 6 11.3211 -2.3007 2.4638 16 7 11.8649 -2.3879 1.2684 17 14 12.4039 -2.3156 3.9858 18 1 12.6741 -3.7194 4.3874 19 1 13.6872 -1.6305 3.6871 20 1 11.7114 -1.6086 5.0930 21 6 9.6596 -1.6505 0.1394 22 6 8.4711 -0.9357 -0.5554 23 1 8.4180 0.1113 -0.2570 24 8 8.5555 -1.0574 -1.9767 25 6 2.3407 -1.1293 0.0002 26 1 -0.3633 -0.0003 -1.0277 27 1 -0.3634 -0.8898 0.5141 28 1 -0.3633 0.8902 0.5135 29 1 1.9771 2.1145 0.0041 30 1 6.1245 0.0580 0.0019 31 1 7.2669 -1.3446 2.1362 32 1 7.3694 -3.0733 1.7062 33 1 12.8279 -2.4604 1.1778 34 1 10.5179 -0.9821 0.2078 35 1 9.9254 -2.5560 -0.4060 36 1 9.2957 -0.5749 -2.3695 37 1 2.0266 -2.1626 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077540735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:52 Heat of formation + Delta-G solvation = -41.346850 kcal Electronic energy + Delta-G solvation = -21622.740558 eV Core-core repulsion = 18174.758798 eV Total energy + Delta-G solvation = -3447.981760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.83333 -39.57140 -37.79041 -35.13148 -34.58070 -33.95713 -31.81482 -30.67222 -28.54156 -27.59056 -26.92406 -24.67650 -23.18277 -21.26433 -20.75655 -20.24685 -19.78310 -18.05795 -17.04533 -16.96909 -16.47989 -16.28732 -15.68936 -14.84973 -14.51497 -14.19156 -13.88784 -13.73855 -13.43467 -13.38920 -13.15223 -12.90888 -12.77770 -12.38858 -12.05666 -11.94740 -11.55234 -11.28893 -10.98839 -10.84943 -10.28823 -10.15425 -9.97754 -9.87937 -9.84109 -9.37401 -8.97165 -8.67789 -8.66578 -6.90255 -5.81667 -3.15871 0.98854 2.14199 2.59327 3.23122 3.26655 3.37052 3.42768 3.44895 4.37767 4.54580 4.56396 4.57336 4.74800 5.11508 5.22048 5.33346 5.38470 5.44632 5.55674 5.56226 5.61562 5.72737 5.78640 5.79977 6.03628 6.11233 6.21533 6.37172 6.64287 6.67740 6.88101 7.23904 7.43039 7.58979 7.68118 8.04763 8.14974 8.20717 9.10188 9.71649 10.36633 11.31183 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030388 B = 0.003632 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.193673 B = 7706.394749 C = 8113.635362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.195 4.195 3 C -0.014 4.014 4 O -0.162 6.162 5 C -0.066 4.066 6 C 0.600 3.400 7 O -0.518 6.518 8 N -0.702 5.702 9 C 0.141 3.859 10 H 0.105 0.895 11 C 0.129 3.871 12 N -0.598 5.598 13 C -0.231 4.231 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.151 3.849 22 C 0.066 3.934 23 H 0.063 0.937 24 O -0.564 6.564 25 C -0.123 4.123 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.208 0.792 30 H 0.403 0.597 31 H 0.031 0.969 32 H 0.036 0.964 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.378 0.622 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.843 9.272 -4.837 20.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.197 4.197 3 C -0.084 4.084 4 O -0.057 6.057 5 C -0.118 4.118 6 C 0.386 3.614 7 O -0.396 6.396 8 N -0.352 5.352 9 C 0.037 3.963 10 H 0.123 0.877 11 C 0.002 3.998 12 N -0.326 5.326 13 C -0.359 4.359 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.744 3.256 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.025 3.975 22 C 0.006 3.994 23 H 0.080 0.920 24 O -0.368 6.368 25 C -0.144 4.144 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.224 0.776 30 H 0.238 0.762 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.225 0.775 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.919 8.170 -4.697 20.246 hybrid contribution 0.971 0.750 0.701 1.413 sum -16.948 8.921 -3.996 19.565 Atomic orbital electron populations 1.20173 0.88687 1.02815 1.02259 1.20483 0.97669 0.92464 1.09046 1.24161 0.80028 0.99976 1.04221 1.84069 1.29286 1.21820 1.70509 1.22200 0.96318 0.80410 1.12911 1.16554 0.81272 0.86442 0.77150 1.90895 1.85848 1.12168 1.50679 1.45903 1.05224 1.10570 1.73461 1.22093 0.81685 0.94722 0.97820 0.87702 1.21643 0.86808 0.99024 0.92317 1.44265 0.99175 1.82360 1.06807 1.19046 0.88082 1.43204 0.85590 0.90301 1.24851 0.96880 1.01534 0.97008 1.69929 1.10423 1.55667 1.20528 0.86079 0.79990 0.77682 0.81858 1.21479 1.21563 1.20523 1.22047 0.92576 0.97947 0.84914 1.23634 0.97091 0.98045 0.80675 0.91960 1.86429 1.53791 1.76577 1.20034 1.21840 0.90540 1.00587 1.01405 0.91320 0.91272 0.91519 0.77569 0.76209 0.95094 0.94575 0.93551 0.90576 0.94121 0.77523 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.39 36.01 0.37 -0.17 16 2 C -0.20 -1.91 6.14 -104.93 -0.64 -2.55 16 3 C -0.01 -0.13 12.00 29.62 0.36 0.23 16 4 O -0.16 -1.94 10.40 5.00 0.05 -1.89 16 5 C -0.07 -0.93 7.13 -36.80 -0.26 -1.19 16 6 C 0.60 10.10 7.79 -12.86 -0.10 10.00 16 7 O -0.52 -10.34 16.55 5.19 0.09 -10.25 16 8 N -0.70 -11.35 5.11 -53.34 -0.27 -11.62 16 9 C 0.14 2.71 3.00 -66.09 -0.20 2.51 16 10 H 0.11 2.21 7.62 -51.93 -0.40 1.82 16 11 C 0.13 2.83 7.00 -3.07 -0.02 2.81 16 12 N -0.60 -15.31 3.40 -169.94 -0.58 -15.88 16 13 C -0.23 -6.43 10.24 -15.06 -0.15 -6.58 16 14 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 15 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 16 N -0.92 -26.50 10.68 55.49 0.59 -25.91 16 17 Si 0.91 21.82 29.56 -169.99 -5.03 16.80 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.15 3.57 5.17 -2.41 -0.01 3.55 16 22 C 0.07 1.23 4.06 -24.47 -0.10 1.13 16 23 H 0.06 1.06 8.00 -51.93 -0.42 0.64 16 24 O -0.56 -9.60 13.48 -35.23 -0.47 -10.07 16 25 C -0.12 -1.53 10.57 -39.39 -0.42 -1.95 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.21 0.98 8.06 -52.48 -0.42 0.55 16 30 H 0.40 5.56 8.29 -40.82 -0.34 5.22 16 31 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.08 1.93 6.94 -51.93 -0.36 1.57 16 35 H 0.04 1.07 8.07 -51.93 -0.42 0.65 16 36 H 0.38 4.80 9.12 45.56 0.42 5.22 16 37 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -33.36 320.29 -6.08 -39.44 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -4.01 Total: 7.04 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.27 Total: 7.52 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.26 Total: -53.41 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.34 Total: -22.22 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.36 -6.08 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077540735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.903 kcal (2) G-P(sol) polarization free energy of solvation -33.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds