Wall clock time and date at job start Tue Mar 31 2020 01:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48494 * 109.47389 * 240.00162 * 3 2 1 5 5 H 1.48508 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47262 * 119.99427 * 3 2 1 7 7 C 1.38815 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00066 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64590 * 359.97219 * 9 7 2 11 11 C 1.54324 * 107.26647 * 178.99596 * 10 9 7 12 12 H 1.09003 * 110.71706 * 96.17909 * 11 10 9 13 13 O 1.42904 * 110.87177 * 219.37269 * 11 10 9 14 14 C 1.55153 * 102.94826 * 337.81231 * 11 10 9 15 15 H 1.09004 * 111.00368 * 277.39165 * 14 11 10 16 16 N 1.46499 * 111.00585 * 153.57447 * 14 11 10 17 17 C 1.34777 * 119.99665 * 158.45924 * 16 14 11 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 14 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 14 20 20 C 1.50698 * 109.46944 * 179.97438 * 19 17 16 21 21 C 1.34515 * 125.79036 * 89.71282 * 20 19 17 22 22 C 1.41389 * 106.84074 * 179.88789 * 21 20 19 23 23 C 1.34510 * 106.84000 * 0.37579 * 22 21 20 24 24 O 1.34306 * 125.78971 * 270.02332 * 20 19 17 25 25 C 1.47461 * 125.62912 * 180.02562 * 9 7 2 26 26 H 0.97000 * 120.00231 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.87948 * 59.58280 * 10 9 7 28 28 H 1.08992 * 110.01597 * 298.48852 * 10 9 7 29 29 H 0.96698 * 114.00174 * 293.61787 * 13 11 10 30 30 H 0.97001 * 119.99790 * 338.17637 * 16 14 11 31 31 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 32 32 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 33 33 H 1.08003 * 126.58316 * 0.02562 * 21 20 19 34 34 H 1.07996 * 126.58049 * 180.16367 * 22 21 20 35 35 H 1.08002 * 125.79293 * 179.79046 * 23 22 21 36 36 H 1.08999 * 110.35140 * 85.23158 * 25 9 7 37 37 H 1.09004 * 110.40711 * 322.89127 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0441 -0.0257 12 1 -0.6310 -4.4178 0.9819 13 8 -1.5641 -4.3198 -0.8750 14 6 0.8515 -4.6563 -0.6111 15 1 0.8555 -4.5973 -1.6995 16 7 1.0290 -6.0395 -0.1623 17 6 1.8155 -6.8798 -0.8636 18 8 2.3723 -6.4923 -1.8690 19 6 2.0030 -8.3009 -0.3985 20 6 2.9203 -9.0241 -1.3506 21 6 4.2605 -9.0888 -1.2554 22 6 4.7119 -9.8644 -2.3480 23 6 3.6212 -10.2203 -3.0501 24 8 2.5389 -9.7086 -2.4414 25 6 1.9341 -3.7313 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5582 -2.0524 -0.8828 28 1 -0.5561 -2.0838 0.9012 29 1 -2.4016 -3.9585 -0.5538 30 1 0.5838 -6.3494 0.6418 31 1 2.4410 -8.3018 0.5997 32 1 1.0370 -8.8050 -0.3718 33 1 4.8740 -8.6370 -0.4899 34 1 5.7361 -10.1191 -2.5769 35 1 3.6165 -10.8168 -3.9505 36 1 2.1679 -4.0415 1.0179 37 1 2.8331 -3.7413 -0.6169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077877129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:12 Heat of formation + Delta-G solvation = -36.332614 kcal Electronic energy + Delta-G solvation = -21634.057682 eV Core-core repulsion = 18186.293356 eV Total energy + Delta-G solvation = -3447.764326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58946 -39.65379 -37.84112 -35.08624 -34.05315 -33.20859 -32.29076 -31.53595 -28.57055 -27.50678 -26.50318 -24.35242 -21.80105 -21.41650 -20.57576 -20.28883 -19.99516 -17.61400 -17.31798 -16.99428 -16.60217 -15.77016 -15.63916 -15.21918 -14.84455 -14.34404 -14.02099 -13.72256 -13.14932 -13.03462 -12.86221 -12.75107 -12.67199 -12.44785 -12.06878 -11.86728 -11.47552 -11.25999 -10.90784 -10.79959 -10.20194 -9.94771 -9.92037 -9.85595 -9.84414 -9.34696 -8.85469 -8.63756 -8.49873 -6.92426 -5.76836 -3.11463 1.65798 2.56143 2.73528 2.89993 3.38628 3.41684 3.44149 3.46272 4.43079 4.47026 4.61123 4.88002 4.89554 4.97594 5.12842 5.17667 5.22148 5.43138 5.56399 5.65401 5.74952 5.80739 5.86992 6.02657 6.07870 6.11998 6.45317 6.50157 6.60988 6.86825 7.08719 7.31093 7.45507 7.64115 7.72983 8.10080 8.16703 8.37152 9.14463 9.74513 10.37436 11.34902 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027138 B = 0.003695 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.511428 B = 7575.893866 C = 8292.503384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.007 4.007 3 Si 0.916 3.084 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.154 3.846 11 C 0.069 3.931 12 H 0.058 0.942 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.103 0.897 16 N -0.714 5.714 17 C 0.512 3.488 18 O -0.526 6.526 19 C -0.061 4.061 20 C 0.008 3.992 21 C -0.197 4.197 22 C -0.214 4.214 23 C -0.041 4.041 24 O -0.173 6.173 25 C 0.130 3.870 26 H 0.254 0.746 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.376 0.624 30 H 0.398 0.602 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.201 0.799 36 H 0.024 0.976 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -19.362 1.533 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.203 4.203 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.358 4.358 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.028 3.972 11 C 0.009 3.991 12 H 0.076 0.924 13 O -0.368 6.368 14 C 0.033 3.967 15 H 0.121 0.879 16 N -0.366 5.366 17 C 0.297 3.703 18 O -0.402 6.402 19 C -0.101 4.101 20 C -0.042 4.042 21 C -0.216 4.216 22 C -0.233 4.233 23 C -0.109 4.109 24 O -0.069 6.069 25 C 0.003 3.997 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.223 0.777 30 H 0.232 0.768 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.218 0.782 36 H 0.041 0.959 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.020 -19.163 0.344 19.272 hybrid contribution 0.055 1.061 0.749 1.300 sum 2.075 -18.102 1.093 18.253 Atomic orbital electron populations 1.69907 1.04942 1.25347 1.56985 1.24813 0.95779 0.97784 1.01932 0.86140 0.78443 0.82838 0.77997 1.21023 1.21542 1.21092 1.19053 0.90546 0.82093 1.44121 0.90182 1.44243 1.01187 0.99895 1.87452 1.21812 0.85410 0.87784 1.02192 1.23453 0.85498 0.98553 0.91625 0.92448 1.86471 1.18707 1.79844 1.51800 1.22269 0.94502 0.78925 1.00957 0.87874 1.45874 1.49477 1.11973 1.29226 1.20309 0.79185 0.86783 0.84049 1.90766 1.46974 1.77471 1.24959 1.20108 1.00486 0.92131 0.97406 1.21500 0.93997 0.99125 0.89607 1.21532 0.93725 1.04360 1.01991 1.21796 0.99889 1.03919 0.97693 1.23968 0.83891 1.02952 1.00052 1.83985 1.35788 1.53784 1.33303 1.21858 0.94900 0.85712 0.97248 0.93588 0.92125 0.93283 0.77659 0.76823 0.85874 0.87118 0.83547 0.83542 0.78222 0.95851 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.31 55.49 0.57 -26.22 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 3 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.46 10.28 -15.06 -0.15 -6.62 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.60 -15.40 3.40 -170.03 -0.58 -15.97 16 10 C 0.15 3.63 5.15 -3.06 -0.02 3.61 16 11 C 0.07 1.25 3.96 -24.90 -0.10 1.15 16 12 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 13 O -0.56 -9.66 13.40 -35.23 -0.47 -10.13 16 14 C 0.14 2.60 3.09 -65.77 -0.20 2.40 16 15 H 0.10 2.28 7.64 -51.93 -0.40 1.88 16 16 N -0.71 -10.17 5.21 -51.72 -0.27 -10.44 16 17 C 0.51 7.68 7.82 -10.99 -0.09 7.59 16 18 O -0.53 -10.57 15.73 5.55 0.09 -10.48 16 19 C -0.06 -0.63 6.23 -29.04 -0.18 -0.81 16 20 C 0.01 0.11 5.81 -35.63 -0.21 -0.10 16 21 C -0.20 -2.43 10.81 -39.70 -0.43 -2.86 16 22 C -0.21 -2.39 10.91 -39.70 -0.43 -2.82 16 23 C -0.04 -0.44 12.09 29.41 0.36 -0.09 16 24 O -0.17 -2.32 10.65 5.69 0.06 -2.26 16 25 C 0.13 2.78 6.93 -2.50 -0.02 2.77 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 28 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 29 H 0.38 4.85 9.12 45.56 0.42 5.27 16 30 H 0.40 4.18 8.54 -40.82 -0.35 3.83 16 31 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.15 1.57 8.06 -52.48 -0.42 1.14 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -35.92 319.12 -6.40 -42.32 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -4.02 Total: 7.34 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.57 Total: 3.94 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.27 Total: -52.63 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.32 Total: -22.87 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.92 -6.40 -42.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077877129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.983 kcal (2) G-P(sol) polarization free energy of solvation -35.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds