Wall clock time and date at job start Tue Mar 31 2020 01:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48494 * 109.47389 * 240.00162 * 3 2 1 5 5 H 1.48508 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47262 * 119.99427 * 3 2 1 7 7 C 1.38815 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00066 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99913 * 359.97438 * 7 2 1 10 10 C 1.47025 * 125.64590 * 359.97219 * 9 7 2 11 11 C 1.54324 * 107.26647 * 178.99596 * 10 9 7 12 12 H 1.09003 * 110.71706 * 96.17909 * 11 10 9 13 13 O 1.42904 * 110.87177 * 219.37269 * 11 10 9 14 14 C 1.55153 * 102.94826 * 337.81231 * 11 10 9 15 15 H 1.09004 * 111.00368 * 277.39165 * 14 11 10 16 16 N 1.46499 * 111.00585 * 153.57447 * 14 11 10 17 17 C 1.34777 * 119.99665 * 158.45924 * 16 14 11 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 14 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 14 20 20 C 1.50698 * 109.46944 * 179.97438 * 19 17 16 21 21 C 1.34515 * 125.79036 * 89.71282 * 20 19 17 22 22 C 1.41389 * 106.84074 * 179.88789 * 21 20 19 23 23 C 1.34510 * 106.84000 * 0.37579 * 22 21 20 24 24 O 1.34306 * 125.78971 * 270.02332 * 20 19 17 25 25 C 1.47461 * 125.62912 * 180.02562 * 9 7 2 26 26 H 0.97000 * 120.00231 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.87948 * 59.58280 * 10 9 7 28 28 H 1.08992 * 110.01597 * 298.48852 * 10 9 7 29 29 H 0.96698 * 114.00174 * 293.61787 * 13 11 10 30 30 H 0.97001 * 119.99790 * 338.17637 * 16 14 11 31 31 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 32 32 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 33 33 H 1.08003 * 126.58316 * 0.02562 * 21 20 19 34 34 H 1.07996 * 126.58049 * 180.16367 * 22 21 20 35 35 H 1.08002 * 125.79293 * 179.79046 * 23 22 21 36 36 H 1.08999 * 110.35140 * 85.23158 * 25 9 7 37 37 H 1.09004 * 110.40711 * 322.89127 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1375 -2.5328 0.0006 11 6 -0.4484 -4.0441 -0.0257 12 1 -0.6310 -4.4178 0.9819 13 8 -1.5641 -4.3198 -0.8750 14 6 0.8515 -4.6563 -0.6111 15 1 0.8555 -4.5973 -1.6995 16 7 1.0290 -6.0395 -0.1623 17 6 1.8155 -6.8798 -0.8636 18 8 2.3723 -6.4923 -1.8690 19 6 2.0030 -8.3009 -0.3985 20 6 2.9203 -9.0241 -1.3506 21 6 4.2605 -9.0888 -1.2554 22 6 4.7119 -9.8644 -2.3480 23 6 3.6212 -10.2203 -3.0501 24 8 2.5389 -9.7086 -2.4414 25 6 1.9341 -3.7313 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5582 -2.0524 -0.8828 28 1 -0.5561 -2.0838 0.9012 29 1 -2.4016 -3.9585 -0.5538 30 1 0.5838 -6.3494 0.6418 31 1 2.4410 -8.3018 0.5997 32 1 1.0370 -8.8050 -0.3718 33 1 4.8740 -8.6370 -0.4899 34 1 5.7361 -10.1191 -2.5769 35 1 3.6165 -10.8168 -3.9505 36 1 2.1679 -4.0415 1.0179 37 1 2.8331 -3.7413 -0.6169 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077877129.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:11 Heat of formation + Delta-G solvation = -65.569383 kcal Electronic energy + Delta-G solvation = -21635.325483 eV Core-core repulsion = 18186.293356 eV Total energy + Delta-G solvation = -3449.032127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.45311 -40.99019 -39.38239 -36.68213 -35.57288 -34.13767 -33.70028 -32.90828 -30.26777 -28.99598 -27.77794 -26.20488 -22.78784 -22.63664 -22.19729 -21.73741 -21.08709 -19.15796 -18.51652 -18.34231 -17.92239 -17.30793 -16.67911 -16.50791 -16.33600 -15.80702 -15.57166 -14.99672 -14.62297 -14.47429 -14.30893 -13.81779 -13.75016 -13.71063 -13.52330 -13.16623 -13.12652 -12.80605 -12.70869 -12.61434 -12.13919 -11.89212 -11.54048 -11.20978 -10.87932 -10.79051 -10.76878 -10.17979 -9.36615 -8.97909 -7.89718 -5.27041 0.77263 1.45055 1.48770 1.54690 1.59681 1.68410 2.03709 2.30406 2.48453 3.12644 3.31030 3.54565 3.61816 3.82102 3.96447 4.05907 4.16953 4.20091 4.21909 4.41118 4.45127 4.50711 4.57185 4.81650 4.93934 5.00983 5.03984 5.24812 5.35758 5.42818 5.45638 5.64214 5.65677 6.12703 6.22807 6.54370 6.87342 7.03847 7.25529 7.68437 8.30622 9.19721 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027138 B = 0.003695 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.511428 B = 7575.893866 C = 8292.503384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.981 3.019 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.252 4.252 8 H 0.080 0.920 9 N -0.623 5.623 10 C 0.160 3.840 11 C 0.092 3.908 12 H 0.100 0.900 13 O -0.570 6.570 14 C 0.153 3.847 15 H 0.065 0.935 16 N -0.697 5.697 17 C 0.510 3.490 18 O -0.584 6.584 19 C -0.049 4.049 20 C -0.017 4.017 21 C -0.212 4.212 22 C -0.231 4.231 23 C -0.045 4.045 24 O -0.194 6.194 25 C 0.131 3.869 26 H 0.250 0.750 27 H 0.018 0.982 28 H 0.028 0.972 29 H 0.397 0.603 30 H 0.421 0.579 31 H 0.163 0.837 32 H 0.142 0.858 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.235 0.765 36 H 0.047 0.953 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -21.140 2.759 21.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.380 4.380 8 H 0.098 0.902 9 N -0.351 5.351 10 C 0.034 3.966 11 C 0.032 3.968 12 H 0.118 0.882 13 O -0.378 6.378 14 C 0.046 3.954 15 H 0.083 0.917 16 N -0.350 5.350 17 C 0.297 3.703 18 O -0.463 6.463 19 C -0.088 4.088 20 C -0.068 4.068 21 C -0.232 4.232 22 C -0.250 4.250 23 C -0.112 4.112 24 O -0.091 6.091 25 C 0.005 3.995 26 H 0.059 0.941 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.247 0.753 30 H 0.260 0.740 31 H 0.181 0.819 32 H 0.160 0.840 33 H 0.175 0.825 34 H 0.184 0.816 35 H 0.251 0.749 36 H 0.065 0.935 37 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.108 -20.992 1.617 21.159 hybrid contribution 0.057 1.572 0.309 1.603 sum 2.166 -19.420 1.926 19.635 Atomic orbital electron populations 1.70116 1.06151 1.25645 1.57688 1.25651 0.96736 1.00967 1.02002 0.85126 0.77216 0.78584 0.78231 1.20763 1.21623 1.19876 1.19417 0.91020 0.83570 1.44009 0.90173 1.44522 1.02307 1.00832 1.87415 1.21632 0.84259 0.91555 0.99121 1.23153 0.85618 0.94329 0.93679 0.88228 1.86438 1.19475 1.79629 1.52244 1.21702 0.93983 0.81110 0.98627 0.91703 1.45607 1.49509 1.09860 1.30010 1.21200 0.77679 0.88431 0.82953 1.90750 1.49175 1.78817 1.27593 1.20220 1.02166 0.88151 0.98246 1.21987 0.94788 0.99856 0.90129 1.21896 0.94098 1.04489 1.02680 1.22179 1.01159 1.04006 0.97625 1.24744 0.83288 1.02475 1.00668 1.83975 1.36963 1.54293 1.33820 1.21951 0.94837 0.84635 0.98106 0.94104 0.96384 0.95392 0.75320 0.74014 0.81936 0.84035 0.82550 0.81551 0.74868 0.93494 0.95216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.30 10.31 21.65 0.22 -56.08 16 2 C -0.06 -3.44 5.49 84.86 0.47 -2.97 16 3 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.25 -14.41 10.28 84.03 0.86 -13.54 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -32.56 3.40 -691.84 -2.35 -34.91 16 10 C 0.16 7.70 5.15 86.73 0.45 8.15 16 11 C 0.09 3.22 3.96 31.78 0.13 3.35 16 12 H 0.10 2.72 8.00 -2.39 -0.02 2.70 16 13 O -0.57 -18.64 13.40 -148.98 -2.00 -20.64 16 14 C 0.15 5.64 3.09 46.39 0.14 5.78 16 15 H 0.06 2.94 7.64 -2.39 -0.02 2.92 16 16 N -0.70 -18.15 5.21 -435.93 -2.27 -20.43 16 17 C 0.51 14.43 7.82 87.66 0.69 15.11 16 18 O -0.58 -23.61 15.73 -3.04 -0.05 -23.66 16 19 C -0.05 -0.86 6.23 29.10 0.18 -0.67 16 20 C -0.02 -0.42 5.81 24.83 0.14 -0.28 16 21 C -0.21 -4.96 10.81 22.19 0.24 -4.72 16 22 C -0.23 -4.84 10.91 22.19 0.24 -4.60 16 23 C -0.04 -0.91 12.09 66.97 0.81 -0.10 16 24 O -0.19 -4.97 10.65 -2.56 -0.03 -5.00 16 25 C 0.13 5.61 6.93 86.86 0.60 6.21 16 26 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.02 1.00 7.30 -2.39 -0.02 0.99 16 28 H 0.03 1.44 7.50 -2.39 -0.02 1.42 16 29 H 0.40 9.46 9.12 -74.06 -0.68 8.78 16 30 H 0.42 7.06 8.54 -92.71 -0.79 6.27 16 31 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.24 2.63 8.06 -2.91 -0.02 2.61 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -82.03 319.12 0.15 -81.88 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -0.36 Total: 19.10 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 4.95 Total: 11.71 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.40 Total: -111.42 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -2.07 Total: -49.29 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -82.03 0.15 -81.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077877129.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.312 kcal (2) G-P(sol) polarization free energy of solvation -82.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds