Wall clock time and date at job start Tue Mar 31 2020 02:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34176 * 127.02023 * 2 1 4 4 O 1.34215 * 109.12008 * 179.89637 * 3 2 1 5 5 C 1.33652 * 110.91162 * 0.39379 * 4 3 2 6 6 C 1.36422 * 108.39533 * 359.76174 * 5 4 3 7 7 C 1.47375 * 127.19101 * 180.02562 * 6 5 4 8 8 O 1.21616 * 119.99793 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00512 * 0.02562 * 7 6 5 10 10 C 1.46494 * 120.00315 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.64427 * 36.68501 * 10 9 7 12 12 C 1.54326 * 110.72060 * 273.54361 * 10 9 7 13 13 N 1.47027 * 107.26887 * 219.44361 * 12 10 9 14 14 C 1.36943 * 125.64160 * 178.97684 * 13 12 10 15 15 H 1.08001 * 120.00069 * 0.02562 * 14 13 12 16 16 C 1.38808 * 119.99510 * 180.02562 * 14 13 12 17 17 N 1.31625 * 120.00244 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99858 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47298 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47183 * 120.00223 * 18 16 14 21 21 H 1.48502 * 109.47259 * 239.99690 * 18 16 14 22 22 C 1.47417 * 108.70518 * 358.93954 * 13 12 10 23 23 C 1.54915 * 104.83260 * 24.13212 * 22 13 12 24 24 H 1.09000 * 111.00084 * 204.91499 * 23 22 13 25 25 O 1.42895 * 111.00543 * 81.06084 * 23 22 13 26 26 H 1.09001 * 109.46953 * 269.67920 * 1 2 3 27 27 H 1.09000 * 109.47318 * 29.67518 * 1 2 3 28 28 H 1.09000 * 109.47161 * 149.68148 * 1 2 3 29 29 H 1.07994 * 125.43909 * 0.02562 * 3 2 1 30 30 H 1.07997 * 125.80629 * 179.78875 * 5 4 3 31 31 H 0.97008 * 119.99494 * 359.97438 * 9 7 6 32 32 H 1.08997 * 109.88128 * 338.85850 * 12 10 9 33 33 H 1.08994 * 109.88122 * 100.02682 * 12 10 9 34 34 H 0.97002 * 120.00257 * 180.02562 * 17 16 14 35 35 H 1.09005 * 110.36582 * 142.96226 * 22 13 12 36 36 H 1.08998 * 110.36919 * 265.17890 * 22 13 12 37 37 H 0.96703 * 113.99792 * 67.80673 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3149 1.0713 0.0000 4 8 3.5921 0.6588 0.0023 5 6 3.6623 -0.6759 -0.0047 6 6 2.3922 -1.1738 -0.0066 7 6 1.9914 -2.5920 -0.0132 8 8 0.8125 -2.8906 -0.0146 9 7 2.9312 -3.5580 -0.0178 10 6 2.5327 -4.9677 -0.0238 11 1 1.6408 -5.1123 -0.6336 12 6 2.2988 -5.4752 1.4147 13 7 2.8361 -6.8417 1.4883 14 6 2.8424 -7.6378 2.6025 15 1 2.4270 -7.2721 3.5299 16 6 3.3828 -8.9149 2.5399 17 7 3.8887 -9.3608 1.4095 18 14 3.3908 -10.0012 4.0595 19 1 2.7676 -9.2716 5.1928 20 1 2.6213 -11.2414 3.7855 21 1 4.7905 -10.3541 4.4084 22 6 3.3662 -7.2132 0.1638 23 6 3.6957 -5.8648 -0.5240 24 1 3.6736 -5.9641 -1.6092 25 8 4.9578 -5.3601 -0.0834 26 1 -0.3633 -0.0058 1.0277 27 1 -0.3634 0.8929 -0.5088 28 1 -0.3633 -0.8871 -0.5188 29 1 1.9895 2.1010 0.0004 30 1 4.5702 -1.2608 -0.0079 31 1 3.8716 -3.3198 -0.0170 32 1 2.8209 -4.8329 2.1239 33 1 1.2315 -5.4841 1.6356 34 1 4.2660 -10.2534 1.3656 35 1 4.2689 -7.8146 0.2715 36 1 2.6140 -7.7581 -0.4067 37 1 5.7149 -5.8881 -0.3717 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083700973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:14:14 Heat of formation + Delta-G solvation = -65.158555 kcal Electronic energy + Delta-G solvation = -21955.524504 eV Core-core repulsion = 18506.510191 eV Total energy + Delta-G solvation = -3449.014313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.48777 -40.89084 -39.28554 -36.38105 -35.51787 -34.76454 -33.68729 -31.70088 -30.16859 -28.68814 -28.12054 -26.52787 -24.53991 -22.40015 -21.90000 -21.14831 -21.03030 -19.36231 -18.80410 -18.24171 -17.13924 -16.98603 -16.91025 -16.61976 -16.05978 -15.80450 -15.55986 -15.07980 -14.71872 -14.38080 -14.30094 -14.20686 -13.97440 -13.55571 -13.40771 -13.23435 -12.93544 -12.77057 -12.43492 -12.26557 -12.10660 -11.91416 -11.85692 -11.11329 -10.88492 -10.73241 -10.59246 -10.10538 -9.59076 -8.91612 -7.81942 -5.25377 0.36900 1.09856 1.46169 1.46723 1.57243 1.97671 2.13784 2.31511 2.48415 3.18754 3.29126 3.57996 3.66526 3.71916 3.83898 3.93441 4.11236 4.29014 4.36991 4.47499 4.53626 4.71648 4.80963 4.83849 4.92061 4.97091 5.06968 5.09360 5.33220 5.43535 5.46649 5.54246 5.70499 6.01311 6.24679 6.57600 6.90823 7.07855 7.21868 7.71703 8.34483 9.20201 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.003891 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.679960 B = 7194.704661 C = 7457.904620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.167 4.167 3 C -0.030 4.030 4 O -0.172 6.172 5 C 0.046 3.954 6 C -0.268 4.268 7 C 0.580 3.420 8 O -0.580 6.580 9 N -0.693 5.693 10 C 0.156 3.844 11 H 0.095 0.905 12 C 0.132 3.868 13 N -0.616 5.616 14 C -0.243 4.243 15 H 0.072 0.928 16 C -0.058 4.058 17 N -0.944 5.944 18 Si 0.981 3.019 19 H -0.274 1.274 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.126 3.874 23 C 0.093 3.907 24 H 0.097 0.903 25 O -0.562 6.562 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.052 0.948 29 H 0.248 0.752 30 H 0.244 0.756 31 H 0.417 0.583 32 H 0.021 0.979 33 H 0.008 0.992 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.001 0.999 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 19.665 -6.890 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.168 4.168 3 C -0.095 4.095 4 O -0.066 6.066 5 C -0.024 4.024 6 C -0.273 4.273 7 C 0.369 3.631 8 O -0.461 6.461 9 N -0.345 5.345 10 C 0.050 3.950 11 H 0.113 0.887 12 C 0.005 3.995 13 N -0.342 5.342 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.251 4.251 17 N -0.593 5.593 18 Si 0.809 3.191 19 H -0.198 1.198 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.000 4.000 23 C 0.033 3.967 24 H 0.114 0.886 25 O -0.370 6.370 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.264 0.736 30 H 0.260 0.740 31 H 0.255 0.745 32 H 0.039 0.961 33 H 0.026 0.974 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.019 0.981 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 1.516 19.911 -6.551 21.016 hybrid contribution 0.211 -1.651 0.672 1.795 sum 1.727 18.261 -5.879 19.261 Atomic orbital electron populations 1.20179 0.88417 1.03044 1.02311 1.21693 0.97842 0.90935 1.06364 1.24361 0.78753 1.00605 1.05776 1.83825 1.30066 1.22151 1.70538 1.24986 0.98875 0.81141 0.97441 1.21427 0.95326 0.93044 1.17487 1.17776 0.85151 0.84969 0.75181 1.90736 1.19064 1.84051 1.52227 1.45500 1.10309 1.04460 1.74222 1.21811 0.97311 0.80151 0.95768 0.88678 1.21628 0.95237 0.86735 0.95863 1.44560 1.69714 1.11721 1.08222 1.19424 1.33052 0.95399 0.89303 0.91036 1.25535 1.00920 0.98281 1.00362 1.69944 1.46150 1.17875 1.25378 0.84982 0.77193 0.78260 0.78679 1.19841 1.21695 1.21226 1.22524 0.99519 0.93723 0.84213 1.23245 0.83530 0.92560 0.97412 0.88563 1.86187 1.15504 1.55109 1.80246 0.91673 0.88862 0.92915 0.73650 0.74038 0.74518 0.96100 0.97412 0.94016 0.88944 0.98137 0.75234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 10.00 71.24 0.71 -1.11 16 2 C -0.17 -3.82 6.37 -18.49 -0.12 -3.94 16 3 C -0.03 -0.47 11.96 66.89 0.80 0.33 16 4 O -0.17 -2.96 10.52 4.47 0.05 -2.91 16 5 C 0.05 0.85 11.61 67.40 0.78 1.63 16 6 C -0.27 -7.00 6.31 -18.99 -0.12 -7.12 16 7 C 0.58 19.27 7.81 86.65 0.68 19.95 16 8 O -0.58 -23.80 15.13 -4.08 -0.06 -23.86 16 9 N -0.69 -21.42 5.08 -440.21 -2.23 -23.65 16 10 C 0.16 5.81 3.12 46.18 0.14 5.96 16 11 H 0.10 3.69 7.69 -2.39 -0.02 3.67 16 12 C 0.13 6.15 6.99 86.73 0.61 6.76 16 13 N -0.62 -32.72 3.39 -691.98 -2.35 -35.07 16 14 C -0.24 -14.06 10.27 84.03 0.86 -13.20 16 15 H 0.07 4.10 7.83 -2.91 -0.02 4.07 16 16 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 17 N -0.94 -54.51 10.09 21.65 0.22 -54.29 16 18 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 C 0.13 5.94 5.62 86.86 0.49 6.43 16 23 C 0.09 3.22 4.28 31.99 0.14 3.36 16 24 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 25 O -0.56 -17.25 12.23 -148.98 -1.82 -19.07 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.48 6.92 -2.39 -0.02 1.46 16 29 H 0.25 1.56 8.06 -2.91 -0.02 1.53 16 30 H 0.24 2.61 7.47 -2.91 -0.02 2.59 16 31 H 0.42 10.58 6.54 -92.70 -0.61 9.97 16 32 H 0.02 1.00 8.03 -2.39 -0.02 0.98 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 35 H 0.09 4.81 5.87 -2.38 -0.01 4.80 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.40 9.41 9.12 -74.06 -0.68 8.73 16 Total: -1.00 -75.87 313.71 1.10 -74.77 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.16 Total: 19.99 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 5.44 Total: 16.22 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -4.37 Total: -113.01 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -1.84 Total: -45.85 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -75.87 1.10 -74.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083700973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.607 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds