Wall clock time and date at job start Tue Mar 31 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35135 * 126.44276 * 2 1 4 4 O 1.33925 * 108.76694 * 179.97438 * 3 2 1 5 5 C 1.34916 * 109.38759 * 359.72794 * 4 3 2 6 6 C 1.46653 * 125.99088 * 180.30767 * 5 4 3 7 7 O 1.21697 * 119.99829 * 180.15532 * 6 5 4 8 8 N 1.34775 * 119.99833 * 0.15301 * 6 5 4 9 9 C 1.46504 * 119.99986 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.88412 * 31.11730 * 9 8 6 11 11 C 1.54910 * 111.00129 * 267.19737 * 9 8 6 12 12 N 1.47428 * 104.83035 * 204.91519 * 11 9 8 13 13 C 1.36939 * 125.64880 * 204.08757 * 12 11 9 14 14 H 1.07997 * 119.99628 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00146 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00045 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00429 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46918 * 59.99704 * 17 15 13 19 19 H 1.48490 * 109.47545 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47176 * 300.00388 * 17 15 13 21 21 C 1.47021 * 108.70375 * 24.12829 * 12 11 9 22 22 C 1.54323 * 107.27094 * 358.93956 * 21 12 11 23 23 H 1.08997 * 110.87642 * 219.37438 * 22 21 12 24 24 O 1.42898 * 110.71947 * 96.17231 * 22 21 12 25 25 C 1.36544 * 108.02068 * 0.44202 * 5 4 3 26 26 H 1.09000 * 109.46676 * 270.02416 * 1 2 3 27 27 H 1.08998 * 109.46978 * 30.02107 * 1 2 3 28 28 H 1.08993 * 109.47038 * 150.02151 * 1 2 3 29 29 H 1.08003 * 125.61520 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00139 * 359.97438 * 8 6 5 31 31 H 1.08992 * 110.36957 * 323.74980 * 11 9 8 32 32 H 1.09006 * 110.36702 * 86.07784 * 11 9 8 33 33 H 0.97000 * 120.00344 * 180.02562 * 16 15 13 34 34 H 1.09007 * 109.88150 * 239.52357 * 21 12 11 35 35 H 1.09001 * 110.01260 * 118.43308 * 21 12 11 36 36 H 0.96699 * 114.00129 * 66.47848 * 24 22 21 37 37 H 1.08002 * 126.64784 * 179.84021 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0871 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6261 -0.6681 0.0070 6 6 4.8379 -1.4940 0.0160 7 8 4.7470 -2.7076 0.0184 8 7 6.0520 -0.9091 0.0216 9 6 7.2626 -1.7341 0.0301 10 1 7.0956 -2.6745 -0.4953 11 6 7.7531 -1.9855 1.4778 12 7 9.1974 -2.2504 1.3462 13 6 9.9628 -2.9594 2.2332 14 1 9.5118 -3.3798 3.1199 15 6 11.3182 -3.1378 1.9926 16 7 11.8677 -2.6259 0.9116 17 14 12.3625 -4.1043 3.2028 18 1 11.8336 -5.4872 3.3188 19 1 13.7659 -4.1495 2.7199 20 1 12.3179 -3.4444 4.5323 21 6 9.6801 -1.6266 0.1056 22 6 8.4649 -0.9639 -0.5769 23 1 8.5043 -1.1002 -1.6576 24 8 8.3946 0.4246 -0.2466 25 6 2.3408 -1.1291 0.0006 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 1.9770 2.1146 0.0004 30 1 6.1244 0.0582 0.0193 31 1 7.5841 -1.1027 2.0942 32 1 7.2461 -2.8505 1.9053 33 1 12.8147 -2.7509 0.7432 34 1 10.1050 -2.3864 -0.5505 35 1 10.4330 -0.8726 0.3355 36 1 9.1235 0.9510 -0.6024 37 1 2.0266 -2.1624 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083713578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:58 Heat of formation + Delta-G solvation = -40.042939 kcal Electronic energy + Delta-G solvation = -21712.531204 eV Core-core repulsion = 18264.605986 eV Total energy + Delta-G solvation = -3447.925218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.80186 -39.53608 -37.85541 -34.85521 -34.54667 -33.87409 -31.74222 -30.63819 -28.57563 -27.62583 -26.89456 -24.65725 -23.18680 -21.22876 -20.53637 -20.22664 -19.73347 -18.05424 -17.23738 -16.78316 -16.43414 -16.30139 -15.39537 -14.81175 -14.41871 -14.23001 -13.96825 -13.74518 -13.41514 -13.20425 -13.14713 -12.86244 -12.68583 -12.60485 -12.23187 -11.92332 -11.30226 -10.97933 -10.84231 -10.54180 -10.51306 -10.23414 -10.03033 -9.85369 -9.81514 -9.32751 -8.89614 -8.67117 -8.59113 -6.88063 -5.74857 -3.08033 1.01859 2.16460 2.63216 3.24992 3.32486 3.41528 3.45176 3.46923 4.45110 4.52969 4.58969 4.66526 4.78889 5.17011 5.27734 5.34683 5.35784 5.46881 5.54031 5.58038 5.69394 5.74923 5.80910 5.85456 6.04683 6.19624 6.23940 6.50999 6.62850 6.72319 6.92141 7.32582 7.43983 7.69328 7.74813 8.06000 8.19300 8.28462 9.17680 9.77681 10.42058 11.37365 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.036821 B = 0.003585 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.249157 B = 7808.757717 C = 8223.187667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.196 4.196 3 C -0.014 4.014 4 O -0.160 6.160 5 C -0.065 4.065 6 C 0.596 3.404 7 O -0.523 6.523 8 N -0.694 5.694 9 C 0.136 3.864 10 H 0.109 0.891 11 C 0.131 3.869 12 N -0.600 5.600 13 C -0.225 4.225 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.927 5.927 17 Si 0.916 3.084 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.155 3.845 22 C 0.068 3.932 23 H 0.062 0.938 24 O -0.567 6.567 25 C -0.125 4.125 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.207 0.793 30 H 0.412 0.588 31 H 0.027 0.973 32 H 0.046 0.954 33 H 0.253 0.747 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.380 0.620 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.991 9.224 -5.149 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.197 4.197 3 C -0.084 4.084 4 O -0.055 6.055 5 C -0.117 4.117 6 C 0.381 3.619 7 O -0.402 6.402 8 N -0.344 5.344 9 C 0.031 3.969 10 H 0.126 0.874 11 C 0.004 3.996 12 N -0.327 5.327 13 C -0.354 4.354 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.575 5.575 17 Si 0.746 3.254 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.029 3.971 22 C 0.008 3.992 23 H 0.080 0.920 24 O -0.374 6.374 25 C -0.145 4.145 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.224 0.776 30 H 0.249 0.751 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.048 8.265 -4.824 20.428 hybrid contribution 1.027 0.149 0.329 1.088 sum -17.021 8.414 -4.495 19.511 Atomic orbital electron populations 1.20167 0.88720 1.02741 1.02277 1.20481 0.97641 0.92481 1.09140 1.24167 0.80070 0.99968 1.04224 1.84088 1.29208 1.21815 1.70374 1.22209 0.96312 0.80431 1.12776 1.16617 0.81427 0.86427 0.77403 1.90890 1.85907 1.12173 1.51204 1.45702 1.04642 1.11430 1.72661 1.22468 0.81275 0.93852 0.99337 0.87356 1.21838 0.86466 0.98416 0.92914 1.44264 1.02374 1.62376 1.23681 1.19054 0.89965 1.25452 1.00885 0.90270 1.24794 0.96667 1.00936 0.98087 1.69902 1.11492 1.49507 1.26592 0.86135 0.79352 0.79758 0.80162 1.21065 1.21587 1.21153 1.21864 0.90869 0.96546 0.87814 1.23521 0.96863 0.81462 0.97343 0.91993 1.86253 1.51970 1.19266 1.79890 1.21829 0.90550 1.00547 1.01607 0.91309 0.91553 0.91320 0.77597 0.75148 0.95513 0.93605 0.93654 0.92563 0.92816 0.77212 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.18 16 2 C -0.20 -1.95 6.14 -104.93 -0.64 -2.59 16 3 C -0.01 -0.13 12.00 29.63 0.36 0.22 16 4 O -0.16 -1.99 10.40 5.01 0.05 -1.93 16 5 C -0.06 -0.93 7.13 -36.80 -0.26 -1.19 16 6 C 0.60 10.08 7.79 -12.87 -0.10 9.98 16 7 O -0.52 -10.37 16.50 5.19 0.09 -10.29 16 8 N -0.69 -11.49 5.16 -53.04 -0.27 -11.77 16 9 C 0.14 2.59 3.31 -65.78 -0.22 2.37 16 10 H 0.11 2.15 7.54 -51.93 -0.39 1.76 16 11 C 0.13 2.92 6.92 -2.53 -0.02 2.91 16 12 N -0.60 -15.58 3.39 -170.07 -0.58 -16.16 16 13 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 14 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 16 N -0.93 -26.87 10.31 55.49 0.57 -26.30 16 17 Si 0.92 22.27 29.55 -169.99 -5.02 17.24 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.15 3.64 5.14 -3.07 -0.02 3.62 16 22 C 0.07 1.24 4.20 -24.90 -0.10 1.14 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 O -0.57 -9.23 12.14 -35.23 -0.43 -9.66 16 25 C -0.12 -1.56 10.57 -39.39 -0.42 -1.98 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.21 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.41 6.31 7.34 -40.82 -0.30 6.01 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.06 1.45 7.38 -51.93 -0.38 1.07 16 35 H 0.05 1.38 7.43 -51.93 -0.39 0.99 16 36 H 0.38 4.76 9.12 45.56 0.42 5.17 16 37 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -33.18 318.05 -6.07 -39.26 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -3.97 Total: 7.42 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.30 Total: 7.40 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.28 Total: -54.23 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.29 Total: -21.88 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.18 -6.07 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083713578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.786 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds