Wall clock time and date at job start Tue Mar 31 2020 01:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99610 * 2 1 4 4 H 1.48499 * 109.47138 * 274.98892 * 3 2 1 5 5 H 1.48507 * 109.47105 * 34.98993 * 3 2 1 6 6 H 1.48503 * 109.47193 * 154.98603 * 3 2 1 7 7 C 1.38806 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99994 * 187.04936 * 7 2 1 9 9 N 1.36944 * 119.99857 * 7.05246 * 7 2 1 10 10 C 1.47423 * 125.64756 * 174.84046 * 9 7 2 11 11 C 1.54906 * 104.83400 * 204.08353 * 10 9 7 12 12 H 1.09004 * 111.03769 * 81.08073 * 11 10 9 13 13 N 1.46495 * 111.00633 * 204.91485 * 11 10 9 14 14 C 1.34775 * 120.00305 * 267.19445 * 13 11 10 15 15 O 1.21281 * 119.99905 * 0.02562 * 14 13 11 16 16 C 1.50702 * 120.00046 * 179.97438 * 14 13 11 17 17 C 1.50698 * 109.46857 * 180.02562 * 16 14 13 18 18 C 1.34517 * 125.79473 * 90.02758 * 17 16 14 19 19 C 1.41381 * 106.84409 * 179.97438 * 18 17 16 20 20 C 1.34511 * 106.83979 * 0.02562 * 19 18 17 21 21 O 1.34304 * 125.78858 * 270.02226 * 17 16 14 22 22 C 1.55153 * 101.57914 * 322.99081 * 11 10 9 23 23 H 1.09001 * 110.71924 * 154.04014 * 22 11 10 24 24 O 1.42897 * 110.72101 * 277.13415 * 22 11 10 25 25 C 1.47017 * 125.64706 * 354.78810 * 9 7 2 26 26 H 0.96996 * 120.00806 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.36746 * 85.24454 * 10 9 7 28 28 H 1.09008 * 110.36730 * 322.92355 * 10 9 7 29 29 H 0.96999 * 119.99964 * 87.19311 * 13 11 10 30 30 H 1.08999 * 109.47381 * 60.00442 * 16 14 13 31 31 H 1.09000 * 109.46805 * 300.00097 * 16 14 13 32 32 H 1.08006 * 126.57583 * 0.02562 * 18 17 16 33 33 H 1.07997 * 126.57743 * 179.97438 * 19 18 17 34 34 H 1.08001 * 125.78526 * 179.97438 * 20 19 18 35 35 H 0.96703 * 114.00071 * 179.97438 * 24 22 11 36 36 H 1.08998 * 109.88404 * 59.57103 * 25 9 7 37 37 H 1.08996 * 109.88602 * 298.39930 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5041 2.6200 0.8029 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1142 9 7 1.3334 -2.3835 -0.1467 10 6 1.9496 -3.7169 -0.2723 11 6 0.8913 -4.5750 -1.0094 12 1 0.9256 -4.4000 -2.0848 13 7 1.0648 -5.9976 -0.7061 14 6 1.8205 -6.7709 -1.5106 15 8 2.3573 -6.2889 -2.4855 16 6 1.9995 -8.2343 -1.1982 17 6 2.8822 -8.8667 -2.2432 18 6 4.2229 -8.9615 -2.1880 19 6 4.6358 -9.6222 -3.3677 20 6 3.5228 -9.8911 -4.0736 21 8 2.4637 -9.4314 -3.3876 22 6 -0.4286 -4.0332 -0.3996 23 1 -1.2596 -4.1758 -1.0904 24 8 -0.7020 -4.6624 0.8539 25 6 -0.1281 -2.5323 -0.2032 26 1 -0.4851 0.8399 0.0004 27 1 2.1562 -4.1337 0.7134 28 1 2.8659 -3.6575 -0.8597 29 1 0.6359 -6.3831 0.0739 30 1 1.0273 -8.7271 -1.1967 31 1 2.4632 -8.3424 -0.2176 32 1 4.8613 -8.6025 -1.3942 33 1 5.6502 -9.8637 -3.6486 34 1 3.4871 -10.3918 -5.0299 35 1 -1.5166 -4.3584 1.2772 36 1 -0.5267 -1.9616 -1.0420 37 1 -0.5726 -2.1843 0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083879145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:15 Heat of formation + Delta-G solvation = -36.253818 kcal Electronic energy + Delta-G solvation = -21697.992717 eV Core-core repulsion = 18250.231808 eV Total energy + Delta-G solvation = -3447.760909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.58357 -39.63831 -37.89993 -34.85806 -33.95624 -33.19841 -32.26901 -31.50245 -28.62838 -27.56894 -26.47752 -24.38438 -21.79400 -21.39266 -20.51850 -20.16135 -19.90044 -17.66432 -17.38788 -16.88084 -16.73132 -15.67892 -15.41587 -15.18862 -14.81645 -14.37951 -13.98412 -13.73833 -13.16467 -12.97181 -12.85923 -12.77563 -12.68184 -12.60055 -12.20459 -11.81484 -11.30539 -10.95309 -10.86517 -10.52876 -10.48652 -10.12751 -9.93612 -9.84630 -9.75729 -9.32983 -8.70487 -8.63274 -8.49074 -6.88220 -5.77035 -3.08868 1.66724 2.57202 2.75195 2.91140 3.39552 3.44194 3.46262 3.48837 4.47218 4.49436 4.55675 4.90807 4.96440 5.00504 5.15517 5.24234 5.28976 5.37322 5.51245 5.71312 5.75995 5.86810 5.88139 6.02608 6.08874 6.20928 6.46225 6.58492 6.65394 6.92042 7.09277 7.31953 7.43151 7.71484 7.78271 8.05261 8.18839 8.43135 9.16692 9.77092 10.41848 11.35626 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027920 B = 0.003690 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.609230 B = 7585.757817 C = 8268.779967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.008 4.008 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.131 3.869 11 C 0.138 3.862 12 H 0.105 0.895 13 N -0.707 5.707 14 C 0.509 3.491 15 O -0.533 6.533 16 C -0.061 4.061 17 C 0.010 3.990 18 C -0.198 4.198 19 C -0.213 4.213 20 C -0.042 4.042 21 O -0.173 6.173 22 C 0.068 3.932 23 H 0.061 0.939 24 O -0.568 6.568 25 C 0.153 3.847 26 H 0.253 0.747 27 H 0.026 0.974 28 H 0.044 0.956 29 H 0.408 0.592 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.201 0.799 35 H 0.380 0.620 36 H 0.057 0.943 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -19.339 -1.961 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.004 3.996 11 C 0.033 3.967 12 H 0.123 0.877 13 N -0.359 5.359 14 C 0.294 3.706 15 O -0.409 6.409 16 C -0.101 4.101 17 C -0.041 4.041 18 C -0.217 4.217 19 C -0.232 4.232 20 C -0.110 4.110 21 O -0.069 6.069 22 C 0.008 3.992 23 H 0.079 0.921 24 O -0.374 6.374 25 C 0.028 3.972 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.243 0.757 30 H 0.128 0.872 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.218 0.782 35 H 0.227 0.773 36 H 0.075 0.925 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.378 -19.066 -2.871 19.330 hybrid contribution -0.037 1.092 0.468 1.189 sum 1.341 -17.974 -2.403 18.184 Atomic orbital electron populations 1.69922 1.04954 1.25164 1.57175 1.24807 0.95755 0.97716 1.02095 0.86074 0.78694 0.83332 0.77552 1.21538 1.21763 1.20578 1.19100 0.91252 0.82334 1.42730 0.90239 1.44282 1.01258 1.00986 1.86239 1.21834 0.94711 0.86357 0.96686 1.22360 0.95234 0.78835 1.00290 0.87740 1.45721 1.50970 1.09816 1.29347 1.20354 0.79105 0.87855 0.83326 1.90754 1.47264 1.74864 1.27989 1.20103 1.00929 0.92597 0.96485 1.21518 0.93700 1.01064 0.87820 1.21536 0.93996 1.05326 1.00821 1.21794 0.99723 1.05325 0.96399 1.23957 0.84352 1.03832 0.98833 1.83978 1.36154 1.58574 1.28205 1.23512 0.95410 0.95603 0.84656 0.92144 1.86234 1.47734 1.67335 1.36126 1.21871 0.85674 0.87987 1.01685 0.93709 0.95667 0.93768 0.75699 0.87153 0.85871 0.83554 0.83558 0.78241 0.77267 0.92503 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 10.36 55.49 0.57 -26.18 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 3 Si 0.91 22.23 29.56 -169.99 -5.02 17.20 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.39 10.27 -15.06 -0.15 -6.55 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 9 N -0.60 -15.51 3.39 -170.08 -0.58 -16.09 16 10 C 0.13 2.89 6.92 -2.53 -0.02 2.87 16 11 C 0.14 2.56 3.31 -65.79 -0.22 2.35 16 12 H 0.10 2.11 7.54 -51.93 -0.39 1.71 16 13 N -0.71 -10.44 5.17 -51.73 -0.27 -10.71 16 14 C 0.51 7.69 7.82 -10.99 -0.09 7.60 16 15 O -0.53 -10.54 15.67 5.56 0.09 -10.46 16 16 C -0.06 -0.65 6.23 -29.04 -0.18 -0.83 16 17 C 0.01 0.12 5.81 -35.62 -0.21 -0.08 16 18 C -0.20 -2.46 10.81 -39.70 -0.43 -2.89 16 19 C -0.21 -2.39 10.91 -39.70 -0.43 -2.82 16 20 C -0.04 -0.45 12.09 29.41 0.36 -0.10 16 21 O -0.17 -2.31 10.65 5.70 0.06 -2.25 16 22 C 0.07 1.21 4.20 -24.90 -0.10 1.10 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 O -0.57 -8.73 12.14 -35.23 -0.43 -9.16 16 25 C 0.15 3.58 5.15 -3.06 -0.02 3.56 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.41 5.08 7.59 -40.82 -0.31 4.77 16 30 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.20 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.38 4.49 9.12 45.56 0.42 4.90 16 36 H 0.06 1.47 7.30 -51.93 -0.38 1.09 16 37 H 0.05 1.30 7.54 -51.93 -0.39 0.91 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -35.05 317.38 -6.36 -41.42 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.98 Total: 7.53 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.59 Total: 3.90 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.27 Total: -52.97 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.28 Total: -21.86 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.05 -6.36 -41.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083879145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.162 kcal (2) G-P(sol) polarization free energy of solvation -35.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds