Wall clock time and date at job start Tue Mar 31 2020 01:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99610 * 2 1 4 4 H 1.48499 * 109.47138 * 274.98892 * 3 2 1 5 5 H 1.48507 * 109.47105 * 34.98993 * 3 2 1 6 6 H 1.48503 * 109.47193 * 154.98603 * 3 2 1 7 7 C 1.38806 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99994 * 187.04936 * 7 2 1 9 9 N 1.36944 * 119.99857 * 7.05246 * 7 2 1 10 10 C 1.47423 * 125.64756 * 174.84046 * 9 7 2 11 11 C 1.54906 * 104.83400 * 204.08353 * 10 9 7 12 12 H 1.09004 * 111.03769 * 81.08073 * 11 10 9 13 13 N 1.46495 * 111.00633 * 204.91485 * 11 10 9 14 14 C 1.34775 * 120.00305 * 267.19445 * 13 11 10 15 15 O 1.21281 * 119.99905 * 0.02562 * 14 13 11 16 16 C 1.50702 * 120.00046 * 179.97438 * 14 13 11 17 17 C 1.50698 * 109.46857 * 180.02562 * 16 14 13 18 18 C 1.34517 * 125.79473 * 90.02758 * 17 16 14 19 19 C 1.41381 * 106.84409 * 179.97438 * 18 17 16 20 20 C 1.34511 * 106.83979 * 0.02562 * 19 18 17 21 21 O 1.34304 * 125.78858 * 270.02226 * 17 16 14 22 22 C 1.55153 * 101.57914 * 322.99081 * 11 10 9 23 23 H 1.09001 * 110.71924 * 154.04014 * 22 11 10 24 24 O 1.42897 * 110.72101 * 277.13415 * 22 11 10 25 25 C 1.47017 * 125.64706 * 354.78810 * 9 7 2 26 26 H 0.96996 * 120.00806 * 359.97438 * 1 2 3 27 27 H 1.09000 * 110.36746 * 85.24454 * 10 9 7 28 28 H 1.09008 * 110.36730 * 322.92355 * 10 9 7 29 29 H 0.96999 * 119.99964 * 87.19311 * 13 11 10 30 30 H 1.08999 * 109.47381 * 60.00442 * 16 14 13 31 31 H 1.09000 * 109.46805 * 300.00097 * 16 14 13 32 32 H 1.08006 * 126.57583 * 0.02562 * 18 17 16 33 33 H 1.07997 * 126.57743 * 179.97438 * 19 18 17 34 34 H 1.08001 * 125.78526 * 179.97438 * 20 19 18 35 35 H 0.96703 * 114.00071 * 179.97438 * 24 22 11 36 36 H 1.08998 * 109.88404 * 59.57103 * 25 9 7 37 37 H 1.08996 * 109.88602 * 298.39930 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1073 -1.3948 5 1 1.5041 2.6200 0.8029 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2021 -0.0005 8 1 3.0842 -1.2056 0.1142 9 7 1.3334 -2.3835 -0.1467 10 6 1.9496 -3.7169 -0.2723 11 6 0.8913 -4.5750 -1.0094 12 1 0.9256 -4.4000 -2.0848 13 7 1.0648 -5.9976 -0.7061 14 6 1.8205 -6.7709 -1.5106 15 8 2.3573 -6.2889 -2.4855 16 6 1.9995 -8.2343 -1.1982 17 6 2.8822 -8.8667 -2.2432 18 6 4.2229 -8.9615 -2.1880 19 6 4.6358 -9.6222 -3.3677 20 6 3.5228 -9.8911 -4.0736 21 8 2.4637 -9.4314 -3.3876 22 6 -0.4286 -4.0332 -0.3996 23 1 -1.2596 -4.1758 -1.0904 24 8 -0.7020 -4.6624 0.8539 25 6 -0.1281 -2.5323 -0.2032 26 1 -0.4851 0.8399 0.0004 27 1 2.1562 -4.1337 0.7134 28 1 2.8659 -3.6575 -0.8597 29 1 0.6359 -6.3831 0.0739 30 1 1.0273 -8.7271 -1.1967 31 1 2.4632 -8.3424 -0.2176 32 1 4.8613 -8.6025 -1.3942 33 1 5.6502 -9.8637 -3.6486 34 1 3.4871 -10.3918 -5.0299 35 1 -1.5166 -4.3584 1.2772 36 1 -0.5267 -1.9616 -1.0420 37 1 -0.5726 -2.1843 0.7292 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083879145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:32:14 Heat of formation + Delta-G solvation = -64.059360 kcal Electronic energy + Delta-G solvation = -21699.198456 eV Core-core repulsion = 18250.231808 eV Total energy + Delta-G solvation = -3448.966648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.45132 -40.98543 -39.41092 -36.45129 -35.43006 -34.13032 -33.67283 -32.90426 -30.33052 -29.03707 -27.77106 -26.25229 -22.76070 -22.62731 -22.14513 -21.53950 -21.07627 -19.27361 -18.44005 -18.35137 -17.95006 -16.93736 -16.70544 -16.61728 -16.30817 -15.77368 -15.47357 -14.99272 -14.72742 -14.49519 -14.35709 -14.02222 -13.72179 -13.67094 -13.52114 -13.19875 -12.86451 -12.78388 -12.61709 -12.27938 -12.10367 -11.95546 -11.89705 -11.07471 -10.85860 -10.79402 -10.75734 -10.08416 -9.36320 -8.95507 -7.91138 -5.25720 0.77855 1.44383 1.46862 1.55230 1.59621 1.69177 2.04147 2.31435 2.49525 3.18941 3.28908 3.59479 3.65593 3.81917 3.95121 4.01216 4.16956 4.20077 4.27092 4.41134 4.50084 4.51786 4.66632 4.82656 4.94567 5.04073 5.04252 5.25011 5.36204 5.43486 5.50019 5.63814 5.64192 6.13608 6.22842 6.60214 6.88423 7.05434 7.27708 7.69797 8.33657 9.19226 Molecular weight = 280.13amu Principal moments of inertia in cm(-1) A = 0.027920 B = 0.003690 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.609230 B = 7585.757817 C = 8268.779967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.058 4.058 3 Si 0.978 3.022 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.623 5.623 10 C 0.132 3.868 11 C 0.151 3.849 12 H 0.087 0.913 13 N -0.693 5.693 14 C 0.508 3.492 15 O -0.584 6.584 16 C -0.050 4.050 17 C -0.015 4.015 18 C -0.214 4.214 19 C -0.231 4.231 20 C -0.044 4.044 21 O -0.192 6.192 22 C 0.094 3.906 23 H 0.090 0.910 24 O -0.562 6.562 25 C 0.158 3.842 26 H 0.250 0.750 27 H 0.029 0.971 28 H 0.026 0.974 29 H 0.423 0.577 30 H 0.142 0.858 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.236 0.764 35 H 0.399 0.601 36 H 0.024 0.976 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.672 -21.075 -1.607 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.350 5.350 10 C 0.005 3.995 11 C 0.044 3.956 12 H 0.105 0.895 13 N -0.345 5.345 14 C 0.296 3.704 15 O -0.464 6.464 16 C -0.089 4.089 17 C -0.066 4.066 18 C -0.233 4.233 19 C -0.250 4.250 20 C -0.110 4.110 21 O -0.089 6.089 22 C 0.034 3.966 23 H 0.108 0.892 24 O -0.371 6.371 25 C 0.032 3.968 26 H 0.059 0.941 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.261 0.739 30 H 0.160 0.840 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.184 0.816 34 H 0.253 0.747 35 H 0.250 0.750 36 H 0.042 0.958 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.245 -20.851 -2.473 21.034 hybrid contribution 0.047 1.594 0.359 1.635 sum 1.292 -19.258 -2.113 19.416 Atomic orbital electron populations 1.70113 1.06069 1.25564 1.57651 1.25611 0.96722 1.00776 1.02067 0.85073 0.77849 0.79146 0.77341 1.21427 1.21566 1.19538 1.19416 0.91566 0.83874 1.42976 0.90572 1.44566 1.02568 1.01690 1.86135 1.21888 0.95045 0.85646 0.96883 1.21896 0.94279 0.80658 0.98791 0.89517 1.45535 1.51036 1.08003 1.29947 1.21171 0.77562 0.89553 0.82122 1.90738 1.49203 1.76202 1.30235 1.20194 1.02753 0.88719 0.97244 1.21939 0.94349 1.01877 0.88388 1.21888 0.94383 1.05435 1.01639 1.22170 1.01040 1.05503 0.96254 1.24750 0.83719 1.02937 0.99639 1.83969 1.37266 1.58997 1.28642 1.23095 0.95852 0.91442 0.86234 0.89247 1.86193 1.49271 1.66454 1.35151 1.21737 0.84216 0.91769 0.99030 0.94078 0.95285 0.95592 0.73865 0.84012 0.82533 0.82771 0.81568 0.74746 0.75031 0.95751 0.95601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.89 10.36 21.65 0.22 -55.67 16 2 C -0.06 -3.34 5.48 84.86 0.46 -2.87 16 3 Si 0.98 46.21 29.56 68.60 2.03 48.24 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.25 -14.43 10.27 84.03 0.86 -13.57 16 8 H 0.08 4.31 7.84 -2.91 -0.02 4.28 16 9 N -0.62 -32.86 3.39 -692.00 -2.35 -35.21 16 10 C 0.13 5.86 6.92 86.85 0.60 6.46 16 11 C 0.15 5.48 3.31 46.38 0.15 5.64 16 12 H 0.09 3.52 7.54 -2.39 -0.02 3.50 16 13 N -0.69 -19.04 5.17 -435.98 -2.25 -21.30 16 14 C 0.51 14.56 7.82 87.66 0.69 15.24 16 15 O -0.58 -23.09 15.67 -3.03 -0.05 -23.14 16 16 C -0.05 -0.93 6.23 29.10 0.18 -0.74 16 17 C -0.02 -0.37 5.81 24.83 0.14 -0.23 16 18 C -0.21 -5.09 10.81 22.19 0.24 -4.85 16 19 C -0.23 -4.84 10.91 22.19 0.24 -4.60 16 20 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 21 O -0.19 -4.85 10.65 -2.52 -0.03 -4.87 16 22 C 0.09 3.21 4.20 31.78 0.13 3.34 16 23 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 24 O -0.56 -15.74 12.14 -148.98 -1.81 -17.54 16 25 C 0.16 7.50 5.15 86.73 0.45 7.95 16 26 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.42 9.13 7.59 -92.71 -0.70 8.42 16 30 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 34 H 0.24 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.40 8.26 9.12 -74.06 -0.68 7.58 16 36 H 0.02 1.30 7.30 -2.39 -0.02 1.28 16 37 H 0.03 1.34 7.54 -2.39 -0.02 1.32 16 Total: -1.00 -78.54 317.38 0.46 -78.08 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.27 Total: 19.70 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 4.96 Total: 11.71 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.38 Total: -112.17 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.88 Total: -45.56 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -78.54 0.46 -78.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083879145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.018 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds